.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (BVT_FFPE_TRNA_utn_09_A23WKFTLT4_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/52e1a1a92d68fd96898f17973a6b6b/.command.log
Size: 509 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (BVT_FFPE_TRNA_utn_09_A23WKFTLT4_2)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/14f3eed4e6055559ff66e03ce3ebb0/BVT_FFPE_TRNA_utn_09_A23WKFTLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/52e1a1a92d68fd96898f17973a6b6b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/52e1a1a92d68fd96898f17973a6b6b/.command.sh
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory