Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/be8d17760c47e1dcee3752acf85899/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/3fd193d6e774e6f2ba9e677370f6ce/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/be8d17760c47e1dcee3752acf85899/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
paired = 37378108
unpaired = 821374
MERGED PAIRED END READS = 37378108
MATES PROCESSED = 75577590
TOTAL READS = 38199482
DISTINCT READS = 7.53539e+06
DISTINCT COUNTS = 352
MAX COUNT = 155851
COUNTS OF 1 = 3.05788e+06
MAX TERMS = 100
OBSERVED COUNTS (155852)
1 3057875
2 896053
3 523881
4 419803
5 363864
6 319175
7 278997
8 241050
9 209216
10 179409
11 153658
12 130913
13 111635
14 93668
15 79611
16 67084
17 56498
18 47424
19 39986
20 33887
21 28765
22 24380
23 20660
24 17639
25 15226
26 13033
27 11484
28 10020
29 8525
30 7667
31 6727
32 5962
33 5320
34 4657
35 4419
36 3836
37 3349
38 3061
39 2906
40 2602
41 2351
42 2122
43 1974
44 1856
45 1663
46 1538
47 1442
48 1294
49 1232
50 1116
51 1031
52 912
53 853
54 822
55 817
56 677
57 647
58 574
59 584
60 564
61 481
62 470
63 425
64 388
65 385
66 320
67 302
68 303
69 237
70 242
71 210
72 198
73 164
74 193
75 175
76 156
77 137
78 129
79 122
80 105
81 112
82 102
83 82
84 79
85 75
86 81
87 75
88 58
89 52
90 43
91 48
92 48
93 51
94 41
95 38
96 37
97 39
98 37
99 37
100 32
101 31
102 24
103 23
104 33
105 17
106 26
107 26
108 23
109 27
110 22
111 16
112 19
113 18
114 19
115 19
116 13
117 15
118 19
119 14
120 18
121 15
122 10
123 10
124 11
125 12
126 12
127 12
128 14
129 14
130 12
131 7
132 10
133 5
134 9
135 8
136 8
137 9
138 2
139 7
140 4
141 7
142 6
143 10
144 5
145 7
146 7
147 4
148 8
149 5
150 6
151 6
152 7
153 3
154 5
155 9
156 6
157 6
158 9
159 5
160 7
161 4
162 6
163 5
164 2
165 3
166 4
167 6
168 3
169 4
171 3
172 4
173 4
174 5
175 3
176 6
177 4
178 1
179 6
180 5
181 2
182 2
183 2
184 2
185 3
186 1
187 3
188 4
189 2
190 2
191 5
193 1
194 3
195 2
198 2
199 4
200 2
201 2
202 2
203 3
204 3
205 2
206 2
207 2
208 1
209 1
211 2
212 1
213 3
214 1
215 2
216 3
218 3
219 1
220 2
221 2
222 1
223 5
224 1
225 1
228 1
229 2
230 1
231 2
232 1
233 3
234 2
235 2
236 2
238 1
240 2
241 2
242 2
243 2
244 1
245 2
246 2
247 2
248 1
249 2
251 1
252 1
255 1
256 2
257 2
258 1
259 1
260 3
261 2
263 2
265 2
267 1
268 1
269 1
272 1
273 2
274 1
275 1
276 2
277 3
280 2
281 1
282 1
283 1
284 1
286 1
287 1
288 1
289 1
290 2
292 3
294 2
297 1
298 1
301 1
302 1
303 1
304 1
307 1
308 1
309 1
310 1
311 1
312 2
313 1
314 1
315 1
318 1
322 1
326 1
327 1
328 4
329 2
333 1
334 1
338 1
339 1
340 2
342 2
343 1
346 2
347 1
353 1
360 1
366 2
368 1
373 1
385 2
390 1
392 1
393 1
398 1
403 1
418 1
420 1
425 1
426 1
433 1
434 1
439 1
440 1
450 1
452 1
454 2
458 1
459 1
473 1
479 1
483 1
486 1
487 1
505 3
507 1
511 1
522 1
565 1
577 1
586 1
601 1
603 1
604 1
641 1
665 1
733 1
818 1
999 1
1075 1
1186 1
1191 1
1736 1
2835 1
3174 1
155851 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
._......................__.._..._...._.................._...__........._
.._.__......_......_.._............._.....___._._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]