File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/e6d62657ff01045b56a3f9a34ecba7/.command.log
Size
3.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/6af463abe25db5fc0825d487173568/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/7ba4d7a74602eee30d78af041f391a/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/e6d62657ff01045b56a3f9a34ecba7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/e6d62657ff01045b56a3f9a34ecba7/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
NARS2--GAB2
starfusion
arriba
EXOC2--EPHA5
starfusion
arriba
RIC1--FMNL1
starfusion
arriba
MSI2--CLTC
starfusion
arriba
GUSB--NAIP
starfusion
SHMT2--RACGAP1
starfusion
C22orf39--MYO18B-AS1
starfusion
DOK7--MICB
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
BMP2K--BMP2K
arriba
GTPBP2--AL008627.1
arriba
GTPBP2--MBOAT1
arriba

  0%|          | 0/14 [00:00<?, ?it/s]
Processing NARS2--GAB2:   0%|          | 0/14 [00:00<?, ?it/s]
Processing NARS2--GAB2:   7%|▋         | 1/14 [00:00<00:01,  9.07it/s]
Processing EXOC2--EPHA5:   7%|▋         | 1/14 [00:00<00:01,  9.07it/s]
Processing EXOC2--EPHA5:  14%|█▍        | 2/14 [00:00<00:01,  9.37it/s]
Processing RIC1--FMNL1:  14%|█▍        | 2/14 [00:00<00:01,  9.37it/s] 
Processing RIC1--FMNL1:  21%|██▏       | 3/14 [00:00<00:01,  9.43it/s]
Processing MSI2--CLTC:  21%|██▏       | 3/14 [00:00<00:01,  9.43it/s] 
Processing MSI2--CLTC:  29%|██▊       | 4/14 [00:00<00:01,  9.49it/s]
Processing GUSB--NAIP:  29%|██▊       | 4/14 [00:00<00:01,  9.49it/s]
Processing GUSB--NAIP:  36%|███▌      | 5/14 [00:00<00:00,  9.51it/s]
Processing SHMT2--RACGAP1:  36%|███▌      | 5/14 [00:00<00:00,  9.51it/s]
Processing SHMT2--RACGAP1:  43%|████▎     | 6/14 [00:00<00:00,  9.52it/s]
Processing C22orf39--MYO18B-AS1:  43%|████▎     | 6/14 [00:00<00:00,  9.52it/s]
Processing C22orf39--MYO18B-AS1:  50%|█████     | 7/14 [00:00<00:00,  9.53it/s]
Processing DOK7--MICB:  50%|█████     | 7/14 [00:00<00:00,  9.53it/s]          
Processing DOK7--MICB:  57%|█████▋    | 8/14 [00:00<00:00,  9.55it/s]
Processing PCDHA4--PCDHAC2:  57%|█████▋    | 8/14 [00:00<00:00,  9.55it/s]
Processing PCDHA4--PCDHAC2:  64%|██████▍   | 9/14 [00:00<00:00,  9.56it/s]
Processing PCDHA4--PCDHAC1:  64%|██████▍   | 9/14 [00:00<00:00,  9.56it/s]
Processing PCDHA4--PCDHAC1:  71%|███████▏  | 10/14 [00:01<00:00,  9.57it/s]
Processing PCDHA4--PCDHA13:  71%|███████▏  | 10/14 [00:01<00:00,  9.57it/s]
Processing PCDHA4--PCDHA13:  79%|███████▊  | 11/14 [00:01<00:00,  9.56it/s]
Processing BMP2K--BMP2K:  79%|███████▊  | 11/14 [00:01<00:00,  9.56it/s]   
Processing BMP2K--BMP2K:  86%|████████▌ | 12/14 [00:01<00:00,  9.54it/s]
Processing GTPBP2--AL008627.1:  86%|████████▌ | 12/14 [00:01<00:00,  9.54it/s]
Processing GTPBP2--AL008627.1:  93%|█████████▎| 13/14 [00:01<00:00,  9.54it/s]
Processing GTPBP2--MBOAT1:  93%|█████████▎| 13/14 [00:01<00:00,  9.54it/s]    
Processing GTPBP2--MBOAT1: 100%|██████████| 14/14 [00:01<00:00,  9.54it/s]
Processing GTPBP2--MBOAT1: 100%|██████████| 14/14 [00:01<00:00,  9.52it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory