.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/54efdb9d1daa2a07ddd4fd3717d6b9/.command.log
Size: 741 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/b2e8ca3eef75c1fc5e9a3d57cb36c1/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/54efdb9d1daa2a07ddd4fd3717d6b9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/54efdb9d1daa2a07ddd4fd3717d6b9/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3: vaf_p90=0.990124 -> CONTAMINATED (~1.9%)

Output saved to: BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3.predictions.csv
Summary: 1/1 samples flagged as contaminated