File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/d422048a6445bb023462748ce5523d/.command.log
Size
4.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/c555553d40b78c16e09ded5e56ee16/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/d422048a6445bb023462748ce5523d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/d422048a6445bb023462748ce5523d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/0b38520bb3e5f480389d727818a00a/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
FGFR3--TACC3
starfusion
arriba
IL9R--WASH4P
starfusion
TLK2P1--AC110079.1
starfusion
GUCY1B2--NKAIN2
starfusion
DHRS2--GSTM2
starfusion
LINC00381--NKAIN2
starfusion
TLK2--AL669831.1
starfusion
ZNF33B--LINC01518
starfusion
arriba
AGPS--AC092640.1
starfusion
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
IL9R--WASH6P
arriba
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba

  0%|          | 0/15 [00:00<?, ?it/s]
Processing FGFR3--TACC3:   0%|          | 0/15 [00:00<?, ?it/s]
Processing FGFR3--TACC3:   7%|▋         | 1/15 [00:00<00:01,  9.26it/s]
Processing IL9R--WASH4P:   7%|▋         | 1/15 [00:00<00:01,  9.26it/s]
Processing IL9R--WASH4P:  13%|█▎        | 2/15 [00:00<00:01,  9.49it/s]
Processing TLK2P1--AC110079.1:  13%|█▎        | 2/15 [00:00<00:01,  9.49it/s]
Processing TLK2P1--AC110079.1:  20%|██        | 3/15 [00:00<00:01,  9.56it/s]
Processing GUCY1B2--NKAIN2:  20%|██        | 3/15 [00:00<00:01,  9.56it/s]   
Processing GUCY1B2--NKAIN2:  27%|██▋       | 4/15 [00:00<00:01,  9.60it/s]
Processing DHRS2--GSTM2:  27%|██▋       | 4/15 [00:00<00:01,  9.60it/s]   
Processing DHRS2--GSTM2:  33%|███▎      | 5/15 [00:00<00:01,  9.62it/s]
Processing LINC00381--NKAIN2:  33%|███▎      | 5/15 [00:00<00:01,  9.62it/s]
Processing LINC00381--NKAIN2:  40%|████      | 6/15 [00:00<00:00,  9.63it/s]
Processing TLK2--AL669831.1:  40%|████      | 6/15 [00:00<00:00,  9.63it/s] 
Processing TLK2--AL669831.1:  47%|████▋     | 7/15 [00:00<00:00,  9.64it/s]
Processing ZNF33B--LINC01518:  47%|████▋     | 7/15 [00:00<00:00,  9.64it/s]
Processing ZNF33B--LINC01518:  53%|█████▎    | 8/15 [00:00<00:00,  9.64it/s]
Processing AGPS--AC092640.1:  53%|█████▎    | 8/15 [00:00<00:00,  9.64it/s] 
Processing AGPS--AC092640.1:  60%|██████    | 9/15 [00:00<00:00,  9.64it/s]
Processing PCDHA4--PCDHAC1:  60%|██████    | 9/15 [00:00<00:00,  9.64it/s] 
Processing PCDHA4--PCDHAC1:  67%|██████▋   | 10/15 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  67%|██████▋   | 10/15 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  73%|███████▎  | 11/15 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  73%|███████▎  | 11/15 [00:01<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  80%|████████  | 12/15 [00:01<00:00,  9.65it/s]
Processing IL9R--WASH6P:  80%|████████  | 12/15 [00:01<00:00,  9.65it/s]   
Processing IL9R--WASH6P:  87%|████████▋ | 13/15 [00:01<00:00,  9.65it/s]
Processing STX16--NPEPL1:  87%|████████▋ | 13/15 [00:01<00:00,  9.65it/s]
Processing STX16--NPEPL1:  93%|█████████▎| 14/15 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  93%|█████████▎| 14/15 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4: 100%|██████████| 15/15 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4: 100%|██████████| 15/15 [00:01<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory