Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/a2efdd1c895b7bf3d498ccc0a192ac/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/ba43b746850f4fdd77ef6f0a3b3da4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/ba43b746850f4fdd77ef6f0a3b3da4/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 262974311
unpaired = 5023358
MERGED PAIRED END READS = 262974311
MATES PROCESSED = 530971980
TOTAL READS     = 267997669
DISTINCT READS  = 7.73748e+07
DISTINCT COUNTS = 1400
MAX COUNT       = 922183
COUNTS OF 1     = 2.62956e+07
MAX TERMS       = 100
OBSERVED COUNTS (922184)
1	26295622
2	16530309
3	11115727
4	7384959
5	4845487
6	3185727
7	2112284
8	1427063
9	988917
10	703373
11	511994
12	382736
13	293719
14	229829
15	182727
16	147735
17	121148
18	100327
19	83838
20	70541
21	59640
22	51748
23	44528
24	38450
25	33950
26	30369
27	26597
28	23951
29	21745
30	19437
31	17746
32	16223
33	14743
34	13500
35	12293
36	11319
37	10474
38	9739
39	9151
40	8354
41	7703
42	7353
43	6684
44	6429
45	6028
46	5618
47	5253
48	5026
49	4714
50	4552
51	4047
52	3921
53	3878
54	3576
55	3406
56	3205
57	3246
58	3011
59	2767
60	2671
61	2580
62	2432
63	2408
64	2263
65	2229
66	2123
67	1990
68	1972
69	1876
70	1735
71	1768
72	1620
73	1514
74	1501
75	1487
76	1477
77	1393
78	1339
79	1308
80	1234
81	1185
82	1073
83	1151
84	1095
85	1029
86	978
87	996
88	920
89	932
90	926
91	856
92	813
93	830
94	846
95	770
96	741
97	716
98	745
99	687
100	705
101	625
102	683
103	570
104	598
105	615
106	615
107	539
108	501
109	514
110	546
111	481
112	496
113	465
114	437
115	471
116	454
117	416
118	420
119	429
120	392
121	431
122	395
123	404
124	406
125	363
126	357
127	352
128	328
129	354
130	316
131	363
132	324
133	322
134	336
135	330
136	333
137	271
138	279
139	284
140	274
141	290
142	269
143	260
144	251
145	252
146	251
147	272
148	218
149	253
150	236
151	188
152	206
153	214
154	225
155	208
156	210
157	199
158	222
159	199
160	184
161	186
162	197
163	204
164	180
165	202
166	193
167	177
168	160
169	180
170	160
171	165
172	150
173	181
174	126
175	178
176	161
177	135
178	147
179	132
180	130
181	136
182	125
183	149
184	130
185	135
186	124
187	139
188	120
189	125
190	115
191	116
192	110
193	149
194	115
195	111
196	136
197	121
198	107
199	121
200	135
201	86
202	116
203	103
204	100
205	122
206	98
207	93
208	88
209	93
210	113
211	94
212	89
213	86
214	79
215	79
216	82
217	96
218	91
219	92
220	86
221	100
222	84
223	75
224	63
225	71
226	66
227	72
228	81
229	73
230	83
231	72
232	76
233	73
234	70
235	58
236	81
237	73
238	61
239	85
240	65
241	56
242	60
243	66
244	71
245	63
246	65
247	61
248	41
249	62
250	56
251	64
252	57
253	58
254	44
255	52
256	52
257	54
258	47
259	53
260	69
261	50
262	56
263	42
264	63
265	45
266	47
267	45
268	40
269	56
270	43
271	41
272	42
273	63
274	48
275	55
276	45
277	45
278	41
279	38
280	42
281	36
282	38
283	43
284	36
285	37
286	49
287	43
288	39
289	30
290	40
291	44
292	35
293	30
294	33
295	41
296	38
297	38
298	31
299	30
300	37
301	45
302	37
303	36
304	29
305	25
306	33
307	27
308	26
309	28
310	27
311	34
312	38
313	38
314	26
315	25
316	26
317	31
318	24
319	25
320	27
321	25
322	29
323	25
324	38
325	23
326	31
327	25
328	20
329	25
330	29
331	29
332	26
333	31
334	25
335	27
336	24
337	23
338	16
339	25
340	23
341	20
342	27
343	20
344	22
345	22
346	27
347	21
348	25
349	23
350	25
351	24
352	17
353	33
354	18
355	21
356	22
357	8
358	18
359	18
360	22
361	21
362	16
363	19
364	28
365	27
366	14
367	22
368	18
369	24
370	19
371	25
372	27
373	16
374	22
375	14
376	13
377	18
378	16
379	22
380	12
381	21
382	14
383	20
384	14
385	18
386	18
387	16
388	17
389	12
390	16
391	11
392	17
393	20
394	17
395	14
396	14
397	18
398	12
399	17
400	17
401	16
402	18
403	21
404	9
405	16
406	19
407	13
408	15
409	14
410	10
411	13
412	13
413	12
414	15
415	20
416	14
417	15
418	13
419	23
420	14
421	17
422	11
423	11
424	14
425	11
426	15
427	17
428	17
429	17
430	21
431	5
432	8
433	15
434	11
435	8
436	7
437	13
438	9
439	15
440	15
441	10
442	11
443	6
444	7
445	10
446	15
447	18
448	7
449	9
450	11
451	13
452	15
453	10
454	8
455	10
456	12
457	9
458	14
459	11
460	11
461	9
462	20
463	14
464	11
465	10
466	12
467	8
468	11
469	8
470	14
471	6
472	6
473	7
474	13
475	14
476	10
477	17
478	7
479	10
480	16
481	6
482	6
483	11
484	18
485	7
486	14
487	6
488	6
489	11
490	9
491	8
492	5
493	11
494	8
495	8
496	8
497	5
498	3
499	6
500	11
501	10
502	12
503	9
504	11
505	13
506	8
507	9
508	4
509	4
510	6
511	6
512	8
513	6
514	11
515	5
516	3
517	11
518	4
519	5
520	2
521	3
522	4
523	8
524	6
525	8
526	7
527	5
528	16
529	4
530	6
531	14
532	7
533	14
534	9
535	3
536	6
537	7
538	5
539	5
540	3
541	5
542	5
543	3
544	6
545	5
546	6
547	7
548	13
549	3
550	4
551	12
552	5
553	5
554	5
555	13
556	5
557	3
558	5
559	6
560	8
561	7
562	11
563	6
564	3
565	5
566	4
567	13
568	9
569	4
570	8
571	10
572	9
573	6
574	7
575	7
576	4
577	6
578	5
579	9
580	5
581	6
582	6
583	5
584	5
585	3
586	3
587	3
588	10
589	6
590	7
591	3
592	7
593	6
594	2
595	4
596	7
597	3
598	4
599	3
600	5
601	8
602	2
603	2
604	4
605	4
606	6
607	6
608	1
609	7
610	2
611	8
612	4
613	3
614	2
615	6
616	4
617	8
618	5
619	3
620	5
621	7
622	3
623	3
624	6
625	3
626	6
627	7
628	5
629	2
630	6
631	1
632	6
633	2
634	2
635	3
636	2
637	3
638	3
639	7
640	4
641	3
642	6
643	7
644	6
645	3
646	7
647	2
648	4
649	2
650	3
651	7
652	1
653	4
654	1
655	1
656	7
657	4
658	4
659	6
660	5
661	1
662	4
663	2
664	6
665	2
666	6
667	7
668	2
669	4
670	3
671	1
672	1
673	4
674	6
675	2
676	3
678	6
679	5
680	2
681	4
682	4
683	4
684	3
685	3
686	3
687	7
688	3
689	4
690	1
691	4
692	5
693	5
694	4
695	2
696	1
697	4
698	4
699	2
700	5
701	2
702	6
703	1
704	3
705	4
706	5
707	3
708	1
709	3
710	6
711	4
712	1
713	3
714	4
715	1
716	5
717	6
718	3
719	4
720	3
721	3
722	7
723	7
724	2
725	4
726	4
727	3
728	1
729	2
730	2
731	2
732	1
733	6
734	3
735	4
736	3
737	3
738	2
739	2
740	1
741	2
742	3
743	4
744	3
745	6
746	4
749	1
750	4
751	3
752	4
753	1
754	3
755	1
756	3
758	2
759	2
760	3
761	2
762	3
763	1
764	1
765	5
766	6
768	2
769	3
770	3
771	3
772	1
773	2
774	5
775	1
776	6
777	2
778	2
779	1
780	4
781	2
782	1
783	4
784	5
785	1
786	3
787	5
788	3
789	2
790	4
791	1
792	5
794	1
795	8
796	1
798	1
799	2
800	2
801	3
802	3
803	2
804	1
805	1
806	6
807	3
808	1
809	3
810	3
811	3
812	1
813	1
815	2
816	1
818	1
819	5
820	1
821	2
822	2
823	1
825	3
826	1
827	1
828	5
829	3
830	4
831	2
832	2
833	3
834	3
838	2
839	1
840	4
841	2
842	2
843	4
844	1
845	3
846	1
848	4
849	3
851	2
852	2
853	1
854	1
855	3
856	3
857	1
858	5
859	2
860	1
861	3
862	1
863	2
864	1
865	2
866	2
867	2
869	2
870	1
871	1
872	5
874	1
875	1
876	1
877	4
878	4
879	1
880	1
881	2
882	2
883	1
884	1
885	4
886	3
888	1
889	2
890	2
891	3
892	4
893	1
894	1
895	1
896	1
897	3
898	1
899	2
900	2
901	1
902	6
904	2
905	1
906	3
908	1
909	1
911	2
912	1
913	1
914	1
915	3
916	2
917	1
918	3
920	1
921	1
922	5
923	1
924	2
925	2
926	1
928	1
929	2
930	4
931	1
932	5
933	1
934	1
936	2
938	1
939	1
943	1
945	1
947	3
948	3
949	3
950	1
951	1
952	1
954	2
957	1
958	3
959	2
960	3
962	2
963	2
964	2
968	2
969	2
970	1
971	2
972	1
973	1
974	1
977	1
978	2
979	1
981	2
985	2
987	4
990	1
991	2
992	2
993	3
994	2
996	2
998	2
1000	1
1002	3
1003	1
1005	2
1006	1
1008	3
1011	1
1012	2
1013	1
1015	2
1016	2
1017	1
1018	1
1019	3
1020	1
1021	1
1022	2
1024	2
1025	1
1027	1
1028	1
1030	2
1031	1
1032	1
1034	1
1036	2
1037	1
1038	1
1040	1
1041	1
1042	1
1044	3
1045	1
1046	1
1050	2
1052	1
1053	2
1054	1
1057	3
1058	1
1060	1
1061	1
1062	1
1063	1
1064	1
1067	1
1069	1
1070	1
1071	1
1072	1
1075	1
1078	1
1080	3
1082	1
1083	2
1086	2
1087	2
1088	3
1089	4
1090	1
1091	1
1093	2
1095	1
1097	1
1098	3
1101	1
1102	1
1104	1
1107	1
1108	1
1110	1
1112	1
1113	1
1114	1
1115	2
1117	2
1120	2
1121	1
1125	3
1126	2
1129	1
1131	1
1133	1
1134	1
1136	1
1138	1
1139	1
1140	2
1141	1
1144	3
1146	1
1147	4
1149	1
1151	2
1152	1
1155	1
1157	1
1158	1
1159	2
1160	3
1161	2
1162	2
1163	1
1164	1
1165	1
1167	1
1169	1
1170	1
1171	1
1175	1
1176	1
1178	1
1182	1
1184	2
1185	2
1189	1
1193	1
1195	1
1196	2
1197	1
1202	1
1210	2
1215	1
1216	2
1217	2
1218	1
1219	1
1220	1
1222	1
1223	1
1226	1
1228	1
1230	1
1232	1
1233	1
1237	2
1240	1
1245	2
1249	1
1254	1
1256	1
1257	1
1258	1
1264	1
1266	2
1270	1
1274	1
1276	2
1277	1
1280	1
1281	1
1283	1
1284	1
1286	2
1287	1
1288	3
1289	1
1295	1
1297	1
1299	1
1301	1
1306	1
1307	1
1308	1
1309	2
1310	1
1311	1
1313	1
1317	2
1324	1
1326	3
1329	2
1330	2
1332	1
1333	1
1334	1
1335	1
1338	1
1340	3
1342	1
1343	1
1344	2
1345	1
1348	1
1350	1
1351	1
1352	1
1353	1
1356	1
1357	2
1358	1
1359	1
1360	2
1363	1
1371	1
1373	1
1377	1
1379	2
1384	1
1385	1
1386	2
1392	1
1394	1
1396	1
1398	1
1403	1
1405	1
1410	2
1411	1
1412	1
1417	2
1420	1
1421	1
1423	1
1426	1
1429	1
1430	1
1432	2
1434	1
1438	1
1443	1
1444	1
1448	1
1450	2
1453	1
1454	1
1455	1
1456	1
1457	1
1459	1
1465	2
1470	1
1472	1
1474	1
1475	1
1481	1
1488	1
1491	2
1494	2
1500	1
1505	1
1512	1
1514	1
1515	1
1518	1
1520	1
1523	1
1526	1
1527	1
1530	1
1537	1
1543	1
1544	1
1547	1
1548	2
1552	1
1556	1
1558	2
1561	1
1562	1
1565	1
1568	1
1575	1
1592	2
1595	2
1596	2
1597	1
1599	1
1600	1
1609	1
1616	1
1622	1
1626	2
1627	1
1633	1
1634	1
1635	1
1638	1
1640	1
1649	1
1657	1
1658	2
1659	1
1661	1
1665	3
1667	1
1668	1
1671	1
1682	1
1684	1
1695	1
1699	1
1703	1
1705	1
1711	1
1712	1
1718	1
1724	1
1725	1
1728	1
1731	1
1734	1
1735	1
1745	1
1746	1
1747	1
1755	1
1756	1
1757	1
1760	1
1766	1
1778	1
1779	1
1781	1
1783	1
1784	1
1789	1
1798	1
1800	1
1801	2
1805	1
1811	1
1813	2
1821	1
1823	1
1832	1
1839	1
1840	1
1842	2
1857	1
1876	2
1887	1
1900	1
1911	1
1913	1
1927	1
1929	1
1941	1
1945	1
1955	1
1957	1
1972	1
1986	1
1990	1
1995	1
1996	2
1999	1
2017	1
2023	1
2027	1
2034	2
2052	2
2056	1
2072	1
2088	1
2092	1
2104	1
2126	1
2133	1
2151	1
2158	1
2162	1
2170	1
2181	1
2183	1
2185	1
2186	1
2198	1
2199	1
2200	1
2228	1
2229	1
2239	1
2240	1
2270	1
2272	1
2295	1
2305	1
2317	1
2323	1
2337	1
2347	1
2357	1
2373	1
2377	1
2384	1
2386	1
2387	1
2394	1
2400	1
2418	1
2425	1
2450	1
2456	1
2472	1
2478	1
2482	1
2529	1
2544	1
2572	1
2590	1
2611	1
2614	1
2659	1
2670	1
2698	1
2716	1
2744	1
2776	1
2777	1
2815	1
2816	1
2827	1
2858	1
2910	1
2952	1
2998	1
3003	1
3013	1
3022	1
3036	1
3078	1
3087	1
3172	1
3239	1
3396	1
3431	1
3484	1
3591	1
3675	1
3714	1
3757	1
4009	1
4129	1
4268	1
4406	1
4423	1
4680	1
4880	1
4907	1
5199	1
5314	1
5734	1
5834	1
6568	1
8676	1
9069	1
12785	1
19537	1
922183	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................................................................
............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]