[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	250111822
Known Splicing Events:	247484226
Partial Novel Splicing Events:	1312141
Novel Splicing Events:	1169803
Filtered Splicing Events:	145652

Total splicing  Junctions:	437643
Known Splicing Junctions:	236590
Partial Novel Splicing Junctions:	96057
Novel Splicing Junctions:	104996

===================================================================
Create BED file ...
Create Interact file ...