Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/a2efdd1c895b7bf3d498ccc0a192ac/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/81b21e90e6b905146f0473815e6371/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/81b21e90e6b905146f0473815e6371/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/060f764ee8dfe3f8f473e45dc3816f/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 250111822
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	250111822
Known Splicing Events:	247484226
Partial Novel Splicing Events:	1312141
Novel Splicing Events:	1169803
Filtered Splicing Events:	145652

Total splicing  Junctions:	437643
Known Splicing Junctions:	236590
Partial Novel Splicing Junctions:	96057
Novel Splicing Junctions:	104996

===================================================================
Create BED file ...
Create Interact file ...