Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/37416b96b3bf2e9655195b459cd83e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/af949bbb9b867a49577aafdd91d544/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/37416b96b3bf2e9655195b459cd83e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/c774cca379556227262c583221c909/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2/abundance.h5
Successfully converted BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2/abundance.h5 to BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2_kallisto_mqc.tsv
  Sample: BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2
  Mean Fragment Length: 128.6 bp
  Median Fragment Length: 121.0 bp
  pct_mito_est_counts: 0.012%
  pct_ribo_est_counts: 1.888%
  pct_hk_est_counts: 0.62%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.021%
  pct_ribo_tpm: 4.977%
  pct_hk_tpm: 0.869%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.247%