NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1) - dev_rna_exp0012_exp0013-73d51683 - Workflow Tracker

Runs
dev_rna_exp0..13-73d51683
Tasks
GATK4_MARKDUPLICATES (BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1)

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Task Info

Status: succeeded
Hash: e1f2e52cab0a
Process: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES
Tag: BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 0f/e65adc
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/e65adcd9c1c4331d65ac73637b3f96
Native ID: nf-0fe65adcd9c1c4331d65ac73637b3f96-1f27b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 2
Memory (peak / alloc): 104.1 GB / 148.0 GB
Process I/O (rchar / wchar): 50.1 GB / 34.3 GB
Disk I/O (read / write): - / 34.3 GB
Host: i-04ebd73f6b91a8d22 ( on-demand)

Runtime

Submitted: Jun 08, 2026 2:26:54 AM
Completed: Jun 08, 2026 3:15:24 AM
Total Duration: 48m 29s

Phases

Queue: 24s
Execution: 46m 3s
Stage/Unstage: 2m 2s

Attempt 1

Execution

Status: failed
Hash: 48/769f7f
Failure Reason: spot eviction ()
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/769f7fa1e908291e88e079266b3d65
Native ID: nf-48769f7fa1e908291e88e079266b3d65-0d7fe

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 74.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-01564d74d601ffe69 ( spot)

Runtime

Submitted: Jun 08, 2026 1:45:51 AM
Completed: Jun 08, 2026 2:26:54 AM
Total Duration: 41m 2s

Phases

Queue: 41m 2s
Execution: -
Stage/Unstage: -