Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/9c3b58ad3ad1c96a56aaf93e7daab6/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/e65adcd9c1c4331d65ac73637b3f96/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/e65adcd9c1c4331d65ac73637b3f96/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1.md.bam --METRICS_FILE BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:28:19.334 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:28:19 GMT 2026] MarkDuplicates --INPUT BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1.md.bam --METRICS_FILE BVT_FFPE_TRNA_brn_01_A23WKFTLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:28:19 GMT 2026] Executing as ?@nf-0fe65adcd9c1c4331d65ac73637b3f96-1f27b-8skzf on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:28:19 MarkDuplicates Start of doWork freeMemory: 105131640; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-08 09:28:19 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:28:19 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-08 09:28:24 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,517,332
INFO 2026-06-08 09:28:24 MarkDuplicates Tracking 2290 as yet unmatched pairs. 70 records in RAM.
INFO 2026-06-08 09:28:27 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:8,863,966
INFO 2026-06-08 09:28:27 MarkDuplicates Tracking 5057 as yet unmatched pairs. 163 records in RAM.
INFO 2026-06-08 09:28:29 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:11,022,162
INFO 2026-06-08 09:28:29 MarkDuplicates Tracking 7222 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 09:28:31 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:13,780,657
INFO 2026-06-08 09:28:31 MarkDuplicates Tracking 9713 as yet unmatched pairs. 178 records in RAM.
INFO 2026-06-08 09:28:34 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:16,574,591
INFO 2026-06-08 09:28:34 MarkDuplicates Tracking 11859 as yet unmatched pairs. 166 records in RAM.
INFO 2026-06-08 09:28:36 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:19,235,156
INFO 2026-06-08 09:28:36 MarkDuplicates Tracking 14006 as yet unmatched pairs. 135 records in RAM.
INFO 2026-06-08 09:28:38 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:21,842,279
INFO 2026-06-08 09:28:38 MarkDuplicates Tracking 16446 as yet unmatched pairs. 250 records in RAM.
INFO 2026-06-08 09:28:41 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:23,695,857
INFO 2026-06-08 09:28:41 MarkDuplicates Tracking 18731 as yet unmatched pairs. 20 records in RAM.
INFO 2026-06-08 09:28:43 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:26,731,535
INFO 2026-06-08 09:28:43 MarkDuplicates Tracking 21309 as yet unmatched pairs. 432 records in RAM.
INFO 2026-06-08 09:28:45 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:28,473,758
INFO 2026-06-08 09:28:45 MarkDuplicates Tracking 23331 as yet unmatched pairs. 124 records in RAM.
INFO 2026-06-08 09:28:47 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:31,675,287
INFO 2026-06-08 09:28:47 MarkDuplicates Tracking 26176 as yet unmatched pairs. 511 records in RAM.
INFO 2026-06-08 09:28:50 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:32,335,073
INFO 2026-06-08 09:28:50 MarkDuplicates Tracking 28600 as yet unmatched pairs. 260 records in RAM.
INFO 2026-06-08 09:28:52 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:35,192,652
INFO 2026-06-08 09:28:52 MarkDuplicates Tracking 31506 as yet unmatched pairs. 757 records in RAM.
INFO 2026-06-08 09:28:54 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:36,825,755
INFO 2026-06-08 09:28:54 MarkDuplicates Tracking 33287 as yet unmatched pairs. 263 records in RAM.
INFO 2026-06-08 09:28:56 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:39,428,036
INFO 2026-06-08 09:28:56 MarkDuplicates Tracking 36404 as yet unmatched pairs. 1048 records in RAM.
INFO 2026-06-08 09:29:00 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 3s. Last read position: chr1:41,010,138
INFO 2026-06-08 09:29:00 MarkDuplicates Tracking 37729 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 09:29:02 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:43,591,355
INFO 2026-06-08 09:29:02 MarkDuplicates Tracking 40251 as yet unmatched pairs. 88 records in RAM.
INFO 2026-06-08 09:29:05 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:45,511,266
INFO 2026-06-08 09:29:05 MarkDuplicates Tracking 42881 as yet unmatched pairs. 351 records in RAM.
INFO 2026-06-08 09:29:07 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:51,800,666
INFO 2026-06-08 09:29:07 MarkDuplicates Tracking 44827 as yet unmatched pairs. 24 records in RAM.
INFO 2026-06-08 09:29:10 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:61,314,591
INFO 2026-06-08 09:29:10 MarkDuplicates Tracking 47327 as yet unmatched pairs. 316 records in RAM.
INFO 2026-06-08 09:29:12 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:74,205,588
INFO 2026-06-08 09:29:12 MarkDuplicates Tracking 49258 as yet unmatched pairs. 112 records in RAM.
INFO 2026-06-08 09:29:14 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:93,869,931
INFO 2026-06-08 09:29:14 MarkDuplicates Tracking 51247 as yet unmatched pairs. 63 records in RAM.
INFO 2026-06-08 09:29:16 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:109,250,619
INFO 2026-06-08 09:29:16 MarkDuplicates Tracking 53815 as yet unmatched pairs. 506 records in RAM.
INFO 2026-06-08 09:29:18 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:110,015,498
INFO 2026-06-08 09:29:18 MarkDuplicates Tracking 56023 as yet unmatched pairs. 212 records in RAM.
INFO 2026-06-08 09:29:20 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:113,970,113
INFO 2026-06-08 09:29:20 MarkDuplicates Tracking 58158 as yet unmatched pairs. 235 records in RAM.
INFO 2026-06-08 09:29:23 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:119,915,583
INFO 2026-06-08 09:29:23 MarkDuplicates Tracking 63535 as yet unmatched pairs. 3292 records in RAM.
INFO 2026-06-08 09:29:25 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:119,948,509
INFO 2026-06-08 09:29:25 MarkDuplicates Tracking 63787 as yet unmatched pairs. 1275 records in RAM.
INFO 2026-06-08 09:29:27 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:120,793,229
INFO 2026-06-08 09:29:27 MarkDuplicates Tracking 64763 as yet unmatched pairs. 401 records in RAM.
INFO 2026-06-08 09:29:28 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:145,393,151
INFO 2026-06-08 09:29:28 MarkDuplicates Tracking 65228 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 09:29:30 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:146,966,465
INFO 2026-06-08 09:29:30 MarkDuplicates Tracking 66299 as yet unmatched pairs. 42 records in RAM.
INFO 2026-06-08 09:29:32 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:148,593,147
INFO 2026-06-08 09:29:32 MarkDuplicates Tracking 67247 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 09:29:33 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:149,554,648
INFO 2026-06-08 09:29:33 MarkDuplicates Tracking 68266 as yet unmatched pairs. 20 records in RAM.
INFO 2026-06-08 09:29:35 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:150,472,575
INFO 2026-06-08 09:29:35 MarkDuplicates Tracking 70219 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 09:29:37 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:151,428,144
INFO 2026-06-08 09:29:37 MarkDuplicates Tracking 73129 as yet unmatched pairs. 733 records in RAM.
INFO 2026-06-08 09:29:39 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:154,172,927
INFO 2026-06-08 09:29:39 MarkDuplicates Tracking 74907 as yet unmatched pairs. 428 records in RAM.
INFO 2026-06-08 09:29:41 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:155,169,443
INFO 2026-06-08 09:29:41 MarkDuplicates Tracking 76882 as yet unmatched pairs. 164 records in RAM.
INFO 2026-06-08 09:29:43 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:155,776,363
INFO 2026-06-08 09:29:43 MarkDuplicates Tracking 78805 as yet unmatched pairs. 22 records in RAM.
INFO 2026-06-08 09:29:45 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:156,293,014
INFO 2026-06-08 09:29:45 MarkDuplicates Tracking 81582 as yet unmatched pairs. 158 records in RAM.
INFO 2026-06-08 09:29:47 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:156,652,710
INFO 2026-06-08 09:29:47 MarkDuplicates Tracking 87328 as yet unmatched pairs. 3458 records in RAM.
INFO 2026-06-08 09:29:50 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:156,670,333
INFO 2026-06-08 09:29:50 MarkDuplicates Tracking 87533 as yet unmatched pairs. 1163 records in RAM.
INFO 2026-06-08 09:29:52 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:156,676,672
INFO 2026-06-08 09:29:52 MarkDuplicates Tracking 89199 as yet unmatched pairs. 223 records in RAM.
INFO 2026-06-08 09:29:54 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:160,130,158
INFO 2026-06-08 09:29:54 MarkDuplicates Tracking 91842 as yet unmatched pairs. 282 records in RAM.
INFO 2026-06-08 09:29:56 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 2s. Last read position: chr1:161,506,484
INFO 2026-06-08 09:29:56 MarkDuplicates Tracking 93741 as yet unmatched pairs. 40 records in RAM.
INFO 2026-06-08 09:29:58 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,349
INFO 2026-06-08 09:29:58 MarkDuplicates Tracking 96076 as yet unmatched pairs. 407 records in RAM.
INFO 2026-06-08 09:30:00 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:179,889,331
INFO 2026-06-08 09:30:00 MarkDuplicates Tracking 98057 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-08 09:30:02 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:185,299,763
INFO 2026-06-08 09:30:02 MarkDuplicates Tracking 100299 as yet unmatched pairs. 41 records in RAM.
INFO 2026-06-08 09:30:04 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:200,849,380
INFO 2026-06-08 09:30:04 MarkDuplicates Tracking 102506 as yet unmatched pairs. 216 records in RAM.
INFO 2026-06-08 09:30:06 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:202,128,157
INFO 2026-06-08 09:30:06 MarkDuplicates Tracking 107041 as yet unmatched pairs. 2324 records in RAM.
INFO 2026-06-08 09:30:08 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:204,406,142
INFO 2026-06-08 09:30:08 MarkDuplicates Tracking 107051 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-08 09:30:10 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:206,453,240
INFO 2026-06-08 09:30:10 MarkDuplicates Tracking 109021 as yet unmatched pairs. 123 records in RAM.
INFO 2026-06-08 09:30:12 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:220,167,544
INFO 2026-06-08 09:30:12 MarkDuplicates Tracking 111028 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 09:30:14 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:226,377,217
INFO 2026-06-08 09:30:14 MarkDuplicates Tracking 113307 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 09:30:17 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr1:230,703,298
INFO 2026-06-08 09:30:17 MarkDuplicates Tracking 117804 as yet unmatched pairs. 2158 records in RAM.
INFO 2026-06-08 09:30:19 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr1:235,182,186
INFO 2026-06-08 09:30:19 MarkDuplicates Tracking 118183 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-08 09:30:21 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr1:240,207,511
INFO 2026-06-08 09:30:21 MarkDuplicates Tracking 121681 as yet unmatched pairs. 987 records in RAM.
INFO 2026-06-08 09:30:23 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr1:244,863,673
INFO 2026-06-08 09:30:23 MarkDuplicates Tracking 123787 as yet unmatched pairs. 1129 records in RAM.
INFO 2026-06-08 09:30:26 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 3s. Last read position: chr2:5,692,761
INFO 2026-06-08 09:30:26 MarkDuplicates Tracking 125396 as yet unmatched pairs. 125152 records in RAM.
INFO 2026-06-08 09:30:28 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:12,723,436
INFO 2026-06-08 09:30:28 MarkDuplicates Tracking 128003 as yet unmatched pairs. 127756 records in RAM.
INFO 2026-06-08 09:30:30 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr2:24,752,082
INFO 2026-06-08 09:30:30 MarkDuplicates Tracking 130421 as yet unmatched pairs. 130167 records in RAM.
INFO 2026-06-08 09:30:32 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:27,224,464
INFO 2026-06-08 09:30:32 MarkDuplicates Tracking 132754 as yet unmatched pairs. 132498 records in RAM.
INFO 2026-06-08 09:30:35 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:29,197,553
INFO 2026-06-08 09:30:35 MarkDuplicates Tracking 135265 as yet unmatched pairs. 135005 records in RAM.
INFO 2026-06-08 09:30:37 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,259
INFO 2026-06-08 09:30:37 MarkDuplicates Tracking 185881 as yet unmatched pairs. 133362 records in RAM.
INFO 2026-06-08 09:30:39 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:30:39 MarkDuplicates Tracking 737101 as yet unmatched pairs. 99463 records in RAM.
INFO 2026-06-08 09:30:42 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:30:42 MarkDuplicates Tracking 1208596 as yet unmatched pairs. 71281 records in RAM.
INFO 2026-06-08 09:30:43 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:30:43 MarkDuplicates Tracking 1217418 as yet unmatched pairs. 70929 records in RAM.
INFO 2026-06-08 09:30:45 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:37,279,759
INFO 2026-06-08 09:30:45 MarkDuplicates Tracking 1289510 as yet unmatched pairs. 65801 records in RAM.
INFO 2026-06-08 09:30:47 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:43,574,964
INFO 2026-06-08 09:30:47 MarkDuplicates Tracking 1287411 as yet unmatched pairs. 63679 records in RAM.
INFO 2026-06-08 09:30:49 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:53,923,049
INFO 2026-06-08 09:30:49 MarkDuplicates Tracking 1284635 as yet unmatched pairs. 60900 records in RAM.
INFO 2026-06-08 09:30:51 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr2:55,295,525
INFO 2026-06-08 09:30:51 MarkDuplicates Tracking 1282290 as yet unmatched pairs. 58555 records in RAM.
INFO 2026-06-08 09:30:53 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:63,404,228
INFO 2026-06-08 09:30:53 MarkDuplicates Tracking 1280249 as yet unmatched pairs. 56510 records in RAM.
INFO 2026-06-08 09:30:56 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:71,567,998
INFO 2026-06-08 09:30:56 MarkDuplicates Tracking 1277835 as yet unmatched pairs. 54094 records in RAM.
INFO 2026-06-08 09:30:58 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:74,526,962
INFO 2026-06-08 09:30:58 MarkDuplicates Tracking 1275714 as yet unmatched pairs. 51971 records in RAM.
INFO 2026-06-08 09:31:00 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:87,043,746
INFO 2026-06-08 09:31:00 MarkDuplicates Tracking 1273464 as yet unmatched pairs. 49721 records in RAM.
INFO 2026-06-08 09:31:02 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:96,861,327
INFO 2026-06-08 09:31:02 MarkDuplicates Tracking 1271538 as yet unmatched pairs. 47785 records in RAM.
INFO 2026-06-08 09:31:04 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:101,891,193
INFO 2026-06-08 09:31:04 MarkDuplicates Tracking 1269186 as yet unmatched pairs. 45426 records in RAM.
INFO 2026-06-08 09:31:06 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:108,782,778
INFO 2026-06-08 09:31:06 MarkDuplicates Tracking 1267078 as yet unmatched pairs. 43313 records in RAM.
INFO 2026-06-08 09:31:07 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:113,637,809
INFO 2026-06-08 09:31:07 MarkDuplicates Tracking 1265848 as yet unmatched pairs. 42073 records in RAM.
INFO 2026-06-08 09:31:10 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:130,074,453
INFO 2026-06-08 09:31:10 MarkDuplicates Tracking 1263620 as yet unmatched pairs. 39843 records in RAM.
INFO 2026-06-08 09:31:11 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:135,741,886
INFO 2026-06-08 09:31:11 MarkDuplicates Tracking 1261242 as yet unmatched pairs. 37463 records in RAM.
INFO 2026-06-08 09:31:14 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:152,560,968
INFO 2026-06-08 09:31:14 MarkDuplicates Tracking 1259529 as yet unmatched pairs. 35749 records in RAM.
INFO 2026-06-08 09:31:16 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:167,955,440
INFO 2026-06-08 09:31:16 MarkDuplicates Tracking 1257125 as yet unmatched pairs. 33343 records in RAM.
INFO 2026-06-08 09:31:18 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:177,222,549
INFO 2026-06-08 09:31:18 MarkDuplicates Tracking 1255191 as yet unmatched pairs. 31405 records in RAM.
INFO 2026-06-08 09:31:20 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:186,762,314
INFO 2026-06-08 09:31:20 MarkDuplicates Tracking 1252827 as yet unmatched pairs. 29037 records in RAM.
INFO 2026-06-08 09:31:23 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:199,272,313
INFO 2026-06-08 09:31:23 MarkDuplicates Tracking 1250700 as yet unmatched pairs. 26899 records in RAM.
INFO 2026-06-08 09:31:25 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:206,056,929
INFO 2026-06-08 09:31:25 MarkDuplicates Tracking 1248537 as yet unmatched pairs. 24735 records in RAM.
INFO 2026-06-08 09:31:26 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:210,171,302
INFO 2026-06-08 09:31:26 MarkDuplicates Tracking 1246264 as yet unmatched pairs. 22461 records in RAM.
INFO 2026-06-08 09:31:29 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:215,376,537
INFO 2026-06-08 09:31:29 MarkDuplicates Tracking 1246153 as yet unmatched pairs. 22349 records in RAM.
INFO 2026-06-08 09:31:31 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr2:215,407,264
INFO 2026-06-08 09:31:31 MarkDuplicates Tracking 1243407 as yet unmatched pairs. 19603 records in RAM.
INFO 2026-06-08 09:31:33 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,435,787
INFO 2026-06-08 09:31:33 MarkDuplicates Tracking 1240440 as yet unmatched pairs. 16635 records in RAM.
INFO 2026-06-08 09:31:35 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:217,848,136
INFO 2026-06-08 09:31:35 MarkDuplicates Tracking 1237739 as yet unmatched pairs. 13929 records in RAM.
INFO 2026-06-08 09:31:37 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr2:219,282,004
INFO 2026-06-08 09:31:37 MarkDuplicates Tracking 1235495 as yet unmatched pairs. 11685 records in RAM.
INFO 2026-06-08 09:31:39 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr2:219,627,925
INFO 2026-06-08 09:31:39 MarkDuplicates Tracking 1232338 as yet unmatched pairs. 8528 records in RAM.
INFO 2026-06-08 09:31:42 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:230,878,574
INFO 2026-06-08 09:31:42 MarkDuplicates Tracking 1231384 as yet unmatched pairs. 7540 records in RAM.
INFO 2026-06-08 09:31:44 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr2:237,336,416
INFO 2026-06-08 09:31:44 MarkDuplicates Tracking 1227607 as yet unmatched pairs. 3760 records in RAM.
INFO 2026-06-08 09:31:46 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr2:241,242,542
INFO 2026-06-08 09:31:46 MarkDuplicates Tracking 1225278 as yet unmatched pairs. 1426 records in RAM.
INFO 2026-06-08 09:31:48 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr3:9,064,518
INFO 2026-06-08 09:31:48 MarkDuplicates Tracking 1222727 as yet unmatched pairs. 59679 records in RAM.
INFO 2026-06-08 09:31:51 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr3:10,938,304
INFO 2026-06-08 09:31:51 MarkDuplicates Tracking 1220479 as yet unmatched pairs. 57431 records in RAM.
INFO 2026-06-08 09:31:53 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr3:13,365,999
INFO 2026-06-08 09:31:53 MarkDuplicates Tracking 1218089 as yet unmatched pairs. 55040 records in RAM.
INFO 2026-06-08 09:31:55 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr3:28,241,683
INFO 2026-06-08 09:31:55 MarkDuplicates Tracking 1215830 as yet unmatched pairs. 52778 records in RAM.
INFO 2026-06-08 09:31:57 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr3:39,411,953
INFO 2026-06-08 09:31:57 MarkDuplicates Tracking 1215165 as yet unmatched pairs. 52110 records in RAM.
INFO 2026-06-08 09:32:00 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 3s. Last read position: chr3:45,225,932
INFO 2026-06-08 09:32:00 MarkDuplicates Tracking 1211289 as yet unmatched pairs. 48233 records in RAM.
INFO 2026-06-08 09:32:02 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr3:47,577,092
INFO 2026-06-08 09:32:02 MarkDuplicates Tracking 1209280 as yet unmatched pairs. 46224 records in RAM.
INFO 2026-06-08 09:32:04 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:48,419,814
INFO 2026-06-08 09:32:04 MarkDuplicates Tracking 1206970 as yet unmatched pairs. 43911 records in RAM.
INFO 2026-06-08 09:32:06 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr3:49,015,818
INFO 2026-06-08 09:32:06 MarkDuplicates Tracking 1204117 as yet unmatched pairs. 41057 records in RAM.
INFO 2026-06-08 09:32:08 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr3:49,531,777
INFO 2026-06-08 09:32:08 MarkDuplicates Tracking 1202203 as yet unmatched pairs. 39143 records in RAM.
INFO 2026-06-08 09:32:10 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr3:50,320,021
INFO 2026-06-08 09:32:10 MarkDuplicates Tracking 1199320 as yet unmatched pairs. 36246 records in RAM.
INFO 2026-06-08 09:32:12 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:52,487,630
INFO 2026-06-08 09:32:12 MarkDuplicates Tracking 1197559 as yet unmatched pairs. 34483 records in RAM.
INFO 2026-06-08 09:32:14 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr3:57,628,848
INFO 2026-06-08 09:32:14 MarkDuplicates Tracking 1194621 as yet unmatched pairs. 31544 records in RAM.
INFO 2026-06-08 09:32:16 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr3:66,451,591
INFO 2026-06-08 09:32:16 MarkDuplicates Tracking 1192874 as yet unmatched pairs. 29792 records in RAM.
INFO 2026-06-08 09:32:18 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:101,579,902
INFO 2026-06-08 09:32:18 MarkDuplicates Tracking 1190713 as yet unmatched pairs. 27621 records in RAM.
INFO 2026-06-08 09:32:21 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr3:114,380,292
INFO 2026-06-08 09:32:21 MarkDuplicates Tracking 1188994 as yet unmatched pairs. 25902 records in RAM.
INFO 2026-06-08 09:32:23 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr3:123,946,803
INFO 2026-06-08 09:32:23 MarkDuplicates Tracking 1186144 as yet unmatched pairs. 23038 records in RAM.
INFO 2026-06-08 09:32:25 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:127,660,493
INFO 2026-06-08 09:32:25 MarkDuplicates Tracking 1183710 as yet unmatched pairs. 20599 records in RAM.
INFO 2026-06-08 09:32:27 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr3:132,601,286
INFO 2026-06-08 09:32:27 MarkDuplicates Tracking 1180992 as yet unmatched pairs. 17879 records in RAM.
INFO 2026-06-08 09:32:29 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr3:142,784,717
INFO 2026-06-08 09:32:29 MarkDuplicates Tracking 1178774 as yet unmatched pairs. 15657 records in RAM.
INFO 2026-06-08 09:32:31 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr3:152,835,726
INFO 2026-06-08 09:32:31 MarkDuplicates Tracking 1177236 as yet unmatched pairs. 14114 records in RAM.
INFO 2026-06-08 09:32:33 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:170,360,355
INFO 2026-06-08 09:32:33 MarkDuplicates Tracking 1174135 as yet unmatched pairs. 11012 records in RAM.
INFO 2026-06-08 09:32:35 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr3:181,713,171
INFO 2026-06-08 09:32:35 MarkDuplicates Tracking 1173635 as yet unmatched pairs. 10511 records in RAM.
INFO 2026-06-08 09:32:37 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr3:184,326,597
INFO 2026-06-08 09:32:37 MarkDuplicates Tracking 1169477 as yet unmatched pairs. 6352 records in RAM.
INFO 2026-06-08 09:32:39 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr3:187,072,772
INFO 2026-06-08 09:32:39 MarkDuplicates Tracking 1167021 as yet unmatched pairs. 3894 records in RAM.
INFO 2026-06-08 09:32:42 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr3:195,671,285
INFO 2026-06-08 09:32:42 MarkDuplicates Tracking 1164921 as yet unmatched pairs. 1790 records in RAM.
INFO 2026-06-08 09:32:44 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr4:866,510
INFO 2026-06-08 09:32:44 MarkDuplicates Tracking 1163027 as yet unmatched pairs. 35880 records in RAM.
INFO 2026-06-08 09:32:46 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr4:1,799,767
INFO 2026-06-08 09:32:46 MarkDuplicates Tracking 1160708 as yet unmatched pairs. 33561 records in RAM.
INFO 2026-06-08 09:32:48 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:1,974,862
INFO 2026-06-08 09:32:48 MarkDuplicates Tracking 1157468 as yet unmatched pairs. 30321 records in RAM.
INFO 2026-06-08 09:32:50 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr4:3,182,458
INFO 2026-06-08 09:32:50 MarkDuplicates Tracking 1154709 as yet unmatched pairs. 27556 records in RAM.
INFO 2026-06-08 09:32:52 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr4:8,471,170
INFO 2026-06-08 09:32:52 MarkDuplicates Tracking 1152270 as yet unmatched pairs. 25111 records in RAM.
INFO 2026-06-08 09:32:54 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:30,722,778
INFO 2026-06-08 09:32:54 MarkDuplicates Tracking 1149998 as yet unmatched pairs. 22838 records in RAM.
INFO 2026-06-08 09:32:56 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr4:48,860,750
INFO 2026-06-08 09:32:56 MarkDuplicates Tracking 1147858 as yet unmatched pairs. 20696 records in RAM.
INFO 2026-06-08 09:32:58 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr4:68,316,420
INFO 2026-06-08 09:32:58 MarkDuplicates Tracking 1145607 as yet unmatched pairs. 18442 records in RAM.
INFO 2026-06-08 09:33:00 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:76,770,697
INFO 2026-06-08 09:33:00 MarkDuplicates Tracking 1143302 as yet unmatched pairs. 16134 records in RAM.
INFO 2026-06-08 09:33:03 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr4:86,015,161
INFO 2026-06-08 09:33:03 MarkDuplicates Tracking 1141163 as yet unmatched pairs. 13975 records in RAM.
INFO 2026-06-08 09:33:05 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr4:94,663,993
INFO 2026-06-08 09:33:05 MarkDuplicates Tracking 1139358 as yet unmatched pairs. 12170 records in RAM.
INFO 2026-06-08 09:33:07 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr4:109,481,677
INFO 2026-06-08 09:33:07 MarkDuplicates Tracking 1136865 as yet unmatched pairs. 9665 records in RAM.
INFO 2026-06-08 09:33:09 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:123,402,151
INFO 2026-06-08 09:33:09 MarkDuplicates Tracking 1135139 as yet unmatched pairs. 7937 records in RAM.
INFO 2026-06-08 09:33:11 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr4:145,765,020
INFO 2026-06-08 09:33:11 MarkDuplicates Tracking 1132790 as yet unmatched pairs. 5584 records in RAM.
INFO 2026-06-08 09:33:13 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr4:159,354,030
INFO 2026-06-08 09:33:13 MarkDuplicates Tracking 1130424 as yet unmatched pairs. 3210 records in RAM.
INFO 2026-06-08 09:33:15 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr4:186,598,097
INFO 2026-06-08 09:33:15 MarkDuplicates Tracking 1128048 as yet unmatched pairs. 829 records in RAM.
INFO 2026-06-08 09:33:18 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr5:8,364,622
INFO 2026-06-08 09:33:18 MarkDuplicates Tracking 1125510 as yet unmatched pairs. 63593 records in RAM.
INFO 2026-06-08 09:33:20 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr5:14,358,189
INFO 2026-06-08 09:33:20 MarkDuplicates Tracking 1123704 as yet unmatched pairs. 61786 records in RAM.
INFO 2026-06-08 09:33:22 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:14,487,559
INFO 2026-06-08 09:33:22 MarkDuplicates Tracking 1122768 as yet unmatched pairs. 60848 records in RAM.
INFO 2026-06-08 09:33:24 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr5:14,508,134
INFO 2026-06-08 09:33:24 MarkDuplicates Tracking 1120752 as yet unmatched pairs. 58832 records in RAM.
INFO 2026-06-08 09:33:26 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr5:32,415,098
INFO 2026-06-08 09:33:26 MarkDuplicates Tracking 1115936 as yet unmatched pairs. 54015 records in RAM.
INFO 2026-06-08 09:33:28 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:38,482,655
INFO 2026-06-08 09:33:28 MarkDuplicates Tracking 1114018 as yet unmatched pairs. 52095 records in RAM.
INFO 2026-06-08 09:33:30 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr5:61,472,942
INFO 2026-06-08 09:33:30 MarkDuplicates Tracking 1111625 as yet unmatched pairs. 49699 records in RAM.
INFO 2026-06-08 09:33:32 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr5:70,441,431
INFO 2026-06-08 09:33:32 MarkDuplicates Tracking 1109940 as yet unmatched pairs. 48012 records in RAM.
INFO 2026-06-08 09:33:34 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:74,635,963
INFO 2026-06-08 09:33:34 MarkDuplicates Tracking 1108194 as yet unmatched pairs. 46265 records in RAM.
INFO 2026-06-08 09:33:36 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr5:83,537,150
INFO 2026-06-08 09:33:36 MarkDuplicates Tracking 1105987 as yet unmatched pairs. 44055 records in RAM.
INFO 2026-06-08 09:33:38 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr5:98,793,412
INFO 2026-06-08 09:33:38 MarkDuplicates Tracking 1103617 as yet unmatched pairs. 41678 records in RAM.
INFO 2026-06-08 09:33:41 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr5:116,134,167
INFO 2026-06-08 09:33:41 MarkDuplicates Tracking 1101333 as yet unmatched pairs. 39381 records in RAM.
INFO 2026-06-08 09:33:42 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:131,671,869
INFO 2026-06-08 09:33:42 MarkDuplicates Tracking 1099182 as yet unmatched pairs. 37230 records in RAM.
INFO 2026-06-08 09:33:45 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr5:136,978,668
INFO 2026-06-08 09:33:45 MarkDuplicates Tracking 1096904 as yet unmatched pairs. 34951 records in RAM.
INFO 2026-06-08 09:33:47 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr5:138,887,529
INFO 2026-06-08 09:33:47 MarkDuplicates Tracking 1094896 as yet unmatched pairs. 32943 records in RAM.
INFO 2026-06-08 09:33:49 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:140,809,036
INFO 2026-06-08 09:33:49 MarkDuplicates Tracking 1092695 as yet unmatched pairs. 30656 records in RAM.
INFO 2026-06-08 09:33:51 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:141,174,757
INFO 2026-06-08 09:33:51 MarkDuplicates Tracking 1091045 as yet unmatched pairs. 29006 records in RAM.
INFO 2026-06-08 09:33:53 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:141,216,061
INFO 2026-06-08 09:33:53 MarkDuplicates Tracking 1088688 as yet unmatched pairs. 26648 records in RAM.
INFO 2026-06-08 09:33:54 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:141,404,893
INFO 2026-06-08 09:33:54 MarkDuplicates Tracking 1086683 as yet unmatched pairs. 24642 records in RAM.
INFO 2026-06-08 09:33:56 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr5:141,490,960
INFO 2026-06-08 09:33:56 MarkDuplicates Tracking 1086719 as yet unmatched pairs. 24677 records in RAM.
INFO 2026-06-08 09:33:59 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 2s. Last read position: chr5:142,314,300
INFO 2026-06-08 09:33:59 MarkDuplicates Tracking 1083958 as yet unmatched pairs. 21911 records in RAM.
INFO 2026-06-08 09:34:00 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:147,395,601
INFO 2026-06-08 09:34:00 MarkDuplicates Tracking 1079603 as yet unmatched pairs. 17556 records in RAM.
INFO 2026-06-08 09:34:03 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 2s. Last read position: chr5:150,256,568
INFO 2026-06-08 09:34:03 MarkDuplicates Tracking 1077107 as yet unmatched pairs. 15059 records in RAM.
INFO 2026-06-08 09:34:05 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr5:150,730,632
INFO 2026-06-08 09:34:05 MarkDuplicates Tracking 1074851 as yet unmatched pairs. 12801 records in RAM.
INFO 2026-06-08 09:34:07 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:157,311,761
INFO 2026-06-08 09:34:07 MarkDuplicates Tracking 1072570 as yet unmatched pairs. 10512 records in RAM.
INFO 2026-06-08 09:34:09 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 2s. Last read position: chr5:171,400,196
INFO 2026-06-08 09:34:09 MarkDuplicates Tracking 1071663 as yet unmatched pairs. 9602 records in RAM.
INFO 2026-06-08 09:34:11 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr5:177,293,850
INFO 2026-06-08 09:34:11 MarkDuplicates Tracking 1068446 as yet unmatched pairs. 6384 records in RAM.
INFO 2026-06-08 09:34:13 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:179,621,264
INFO 2026-06-08 09:34:13 MarkDuplicates Tracking 1065916 as yet unmatched pairs. 3854 records in RAM.
INFO 2026-06-08 09:34:15 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr5:179,875,044
INFO 2026-06-08 09:34:15 MarkDuplicates Tracking 1063715 as yet unmatched pairs. 1650 records in RAM.
INFO 2026-06-08 09:34:18 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr6:3,154,192
INFO 2026-06-08 09:34:18 MarkDuplicates Tracking 1062480 as yet unmatched pairs. 60179 records in RAM.
INFO 2026-06-08 09:34:19 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:3,273,127
INFO 2026-06-08 09:34:19 MarkDuplicates Tracking 1060121 as yet unmatched pairs. 57813 records in RAM.
INFO 2026-06-08 09:34:21 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 2s. Last read position: chr6:16,145,278
INFO 2026-06-08 09:34:21 MarkDuplicates Tracking 1057938 as yet unmatched pairs. 55619 records in RAM.
INFO 2026-06-08 09:34:23 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:26,104,128
INFO 2026-06-08 09:34:23 MarkDuplicates Tracking 1055927 as yet unmatched pairs. 53603 records in RAM.
INFO 2026-06-08 09:34:25 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 2s. Last read position: chr6:27,814,562
INFO 2026-06-08 09:34:25 MarkDuplicates Tracking 1053687 as yet unmatched pairs. 51360 records in RAM.
INFO 2026-06-08 09:34:27 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr6:30,489,801
INFO 2026-06-08 09:34:27 MarkDuplicates Tracking 1051294 as yet unmatched pairs. 48963 records in RAM.
INFO 2026-06-08 09:34:29 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:30,892,352
INFO 2026-06-08 09:34:29 MarkDuplicates Tracking 1050929 as yet unmatched pairs. 48594 records in RAM.
INFO 2026-06-08 09:34:31 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr6:31,540,370
INFO 2026-06-08 09:34:31 MarkDuplicates Tracking 1046917 as yet unmatched pairs. 44581 records in RAM.
INFO 2026-06-08 09:34:33 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:31,647,767
INFO 2026-06-08 09:34:33 MarkDuplicates Tracking 1044593 as yet unmatched pairs. 42251 records in RAM.
INFO 2026-06-08 09:34:35 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:31,953,781
INFO 2026-06-08 09:34:35 MarkDuplicates Tracking 1042639 as yet unmatched pairs. 40297 records in RAM.
INFO 2026-06-08 09:34:37 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr6:32,117,332
INFO 2026-06-08 09:34:37 MarkDuplicates Tracking 1040569 as yet unmatched pairs. 38227 records in RAM.
INFO 2026-06-08 09:34:39 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:33,280,568
INFO 2026-06-08 09:34:39 MarkDuplicates Tracking 1038150 as yet unmatched pairs. 35808 records in RAM.
INFO 2026-06-08 09:34:41 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr6:34,417,474
INFO 2026-06-08 09:34:41 MarkDuplicates Tracking 1035940 as yet unmatched pairs. 33593 records in RAM.
INFO 2026-06-08 09:34:43 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 2s. Last read position: chr6:39,925,765
INFO 2026-06-08 09:34:43 MarkDuplicates Tracking 1033542 as yet unmatched pairs. 31192 records in RAM.
INFO 2026-06-08 09:34:45 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr6:43,220,520
INFO 2026-06-08 09:34:45 MarkDuplicates Tracking 1031113 as yet unmatched pairs. 28737 records in RAM.
INFO 2026-06-08 09:34:47 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 2s. Last read position: chr6:44,256,490
INFO 2026-06-08 09:34:47 MarkDuplicates Tracking 1028696 as yet unmatched pairs. 26320 records in RAM.
INFO 2026-06-08 09:34:49 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 2s. Last read position: chr6:56,618,620
INFO 2026-06-08 09:34:49 MarkDuplicates Tracking 1026677 as yet unmatched pairs. 24301 records in RAM.
INFO 2026-06-08 09:34:51 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:81,524,998
INFO 2026-06-08 09:34:51 MarkDuplicates Tracking 1024493 as yet unmatched pairs. 22110 records in RAM.
INFO 2026-06-08 09:34:53 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr6:89,803,534
INFO 2026-06-08 09:34:53 MarkDuplicates Tracking 1022282 as yet unmatched pairs. 19897 records in RAM.
INFO 2026-06-08 09:34:55 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr6:108,663,662
INFO 2026-06-08 09:34:55 MarkDuplicates Tracking 1020013 as yet unmatched pairs. 17623 records in RAM.
INFO 2026-06-08 09:34:57 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:113,860,303
INFO 2026-06-08 09:34:57 MarkDuplicates Tracking 1017639 as yet unmatched pairs. 15244 records in RAM.
INFO 2026-06-08 09:34:59 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr6:130,858,180
INFO 2026-06-08 09:34:59 MarkDuplicates Tracking 1015317 as yet unmatched pairs. 12917 records in RAM.
INFO 2026-06-08 09:35:02 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr6:144,095,223
INFO 2026-06-08 09:35:02 MarkDuplicates Tracking 1012730 as yet unmatched pairs. 10328 records in RAM.
INFO 2026-06-08 09:35:04 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr6:151,350,248
INFO 2026-06-08 09:35:04 MarkDuplicates Tracking 1010807 as yet unmatched pairs. 8403 records in RAM.
INFO 2026-06-08 09:35:06 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 2s. Last read position: chr6:157,201,134
INFO 2026-06-08 09:35:06 MarkDuplicates Tracking 1008516 as yet unmatched pairs. 6092 records in RAM.
INFO 2026-06-08 09:35:08 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr6:163,415,225
INFO 2026-06-08 09:35:08 MarkDuplicates Tracking 1008882 as yet unmatched pairs. 6457 records in RAM.
INFO 2026-06-08 09:35:10 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:163,570,735
INFO 2026-06-08 09:35:10 MarkDuplicates Tracking 1005863 as yet unmatched pairs. 3438 records in RAM.
INFO 2026-06-08 09:35:14 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 3s. Last read position: chr7:857,905
INFO 2026-06-08 09:35:14 MarkDuplicates Tracking 1001245 as yet unmatched pairs. 172883 records in RAM.
INFO 2026-06-08 09:35:16 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr7:2,538,111
INFO 2026-06-08 09:35:16 MarkDuplicates Tracking 999365 as yet unmatched pairs. 170992 records in RAM.
INFO 2026-06-08 09:35:18 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:4,759,405
INFO 2026-06-08 09:35:18 MarkDuplicates Tracking 995688 as yet unmatched pairs. 167311 records in RAM.
INFO 2026-06-08 09:35:20 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 2s. Last read position: chr7:5,371,341
INFO 2026-06-08 09:35:20 MarkDuplicates Tracking 994217 as yet unmatched pairs. 165840 records in RAM.
INFO 2026-06-08 09:35:22 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,109
INFO 2026-06-08 09:35:22 MarkDuplicates Tracking 992951 as yet unmatched pairs. 164572 records in RAM.
INFO 2026-06-08 09:35:24 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:5,905,145
INFO 2026-06-08 09:35:24 MarkDuplicates Tracking 987507 as yet unmatched pairs. 159127 records in RAM.
INFO 2026-06-08 09:35:27 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr7:11,036,451
INFO 2026-06-08 09:35:27 MarkDuplicates Tracking 985304 as yet unmatched pairs. 156921 records in RAM.
INFO 2026-06-08 09:35:29 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 2s. Last read position: chr7:15,686,222
INFO 2026-06-08 09:35:29 MarkDuplicates Tracking 983609 as yet unmatched pairs. 155225 records in RAM.
INFO 2026-06-08 09:35:31 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:26,196,599
INFO 2026-06-08 09:35:31 MarkDuplicates Tracking 981499 as yet unmatched pairs. 153114 records in RAM.
INFO 2026-06-08 09:35:33 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr7:31,106,594
INFO 2026-06-08 09:35:33 MarkDuplicates Tracking 979146 as yet unmatched pairs. 150759 records in RAM.
INFO 2026-06-08 09:35:35 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr7:42,909,932
INFO 2026-06-08 09:35:35 MarkDuplicates Tracking 977937 as yet unmatched pairs. 149548 records in RAM.
INFO 2026-06-08 09:35:37 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:43,876,706
INFO 2026-06-08 09:35:37 MarkDuplicates Tracking 974552 as yet unmatched pairs. 146162 records in RAM.
INFO 2026-06-08 09:35:39 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr7:43,999,999
INFO 2026-06-08 09:35:39 MarkDuplicates Tracking 987769 as yet unmatched pairs. 159379 records in RAM.
INFO 2026-06-08 09:35:41 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:44,007,669
INFO 2026-06-08 09:35:41 MarkDuplicates Tracking 975966 as yet unmatched pairs. 147572 records in RAM.
INFO 2026-06-08 09:35:43 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr7:44,051,852
INFO 2026-06-08 09:35:43 MarkDuplicates Tracking 974401 as yet unmatched pairs. 146005 records in RAM.
INFO 2026-06-08 09:35:45 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr7:44,058,899
INFO 2026-06-08 09:35:45 MarkDuplicates Tracking 972368 as yet unmatched pairs. 143972 records in RAM.
INFO 2026-06-08 09:35:47 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:44,065,283
INFO 2026-06-08 09:35:47 MarkDuplicates Tracking 974243 as yet unmatched pairs. 145847 records in RAM.
INFO 2026-06-08 09:35:50 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr7:44,104,555
INFO 2026-06-08 09:35:50 MarkDuplicates Tracking 965451 as yet unmatched pairs. 137055 records in RAM.
INFO 2026-06-08 09:35:52 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr7:44,106,870
INFO 2026-06-08 09:35:52 MarkDuplicates Tracking 963160 as yet unmatched pairs. 134762 records in RAM.
INFO 2026-06-08 09:35:54 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 2s. Last read position: chr7:44,109,981
INFO 2026-06-08 09:35:54 MarkDuplicates Tracking 961360 as yet unmatched pairs. 132961 records in RAM.
INFO 2026-06-08 09:35:56 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 2s. Last read position: chr7:44,111,545
INFO 2026-06-08 09:35:56 MarkDuplicates Tracking 959072 as yet unmatched pairs. 130673 records in RAM.
INFO 2026-06-08 09:35:58 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr7:44,113,051
INFO 2026-06-08 09:35:58 MarkDuplicates Tracking 955761 as yet unmatched pairs. 127362 records in RAM.
INFO 2026-06-08 09:36:00 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:44,113,972
INFO 2026-06-08 09:36:00 MarkDuplicates Tracking 958052 as yet unmatched pairs. 129652 records in RAM.
INFO 2026-06-08 09:36:03 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 2s. Last read position: chr7:44,114,881
INFO 2026-06-08 09:36:03 MarkDuplicates Tracking 962323 as yet unmatched pairs. 133922 records in RAM.
INFO 2026-06-08 09:36:05 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 2s. Last read position: chr7:44,116,115
INFO 2026-06-08 09:36:05 MarkDuplicates Tracking 959608 as yet unmatched pairs. 131206 records in RAM.
INFO 2026-06-08 09:36:07 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr7:44,116,816
INFO 2026-06-08 09:36:07 MarkDuplicates Tracking 954640 as yet unmatched pairs. 126238 records in RAM.
INFO 2026-06-08 09:36:10 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 2s. Last read position: chr7:44,117,688
INFO 2026-06-08 09:36:10 MarkDuplicates Tracking 949651 as yet unmatched pairs. 121249 records in RAM.
INFO 2026-06-08 09:36:12 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 2s. Last read position: chr7:44,207,475
INFO 2026-06-08 09:36:12 MarkDuplicates Tracking 953178 as yet unmatched pairs. 124776 records in RAM.
INFO 2026-06-08 09:36:14 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr7:45,084,020
INFO 2026-06-08 09:36:14 MarkDuplicates Tracking 936235 as yet unmatched pairs. 107828 records in RAM.
INFO 2026-06-08 09:36:16 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr7:55,019,145
INFO 2026-06-08 09:36:16 MarkDuplicates Tracking 938752 as yet unmatched pairs. 110345 records in RAM.
INFO 2026-06-08 09:36:18 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 2s. Last read position: chr7:55,142,359
INFO 2026-06-08 09:36:18 MarkDuplicates Tracking 947192 as yet unmatched pairs. 118785 records in RAM.
INFO 2026-06-08 09:36:20 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr7:55,146,700
INFO 2026-06-08 09:36:20 MarkDuplicates Tracking 949288 as yet unmatched pairs. 120881 records in RAM.
INFO 2026-06-08 09:36:22 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 2s. Last read position: chr7:55,155,891
INFO 2026-06-08 09:36:22 MarkDuplicates Tracking 932776 as yet unmatched pairs. 104369 records in RAM.
INFO 2026-06-08 09:36:25 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr7:55,160,167
INFO 2026-06-08 09:36:25 MarkDuplicates Tracking 928614 as yet unmatched pairs. 100207 records in RAM.
INFO 2026-06-08 09:36:27 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr7:55,161,609
INFO 2026-06-08 09:36:27 MarkDuplicates Tracking 961387 as yet unmatched pairs. 132980 records in RAM.
INFO 2026-06-08 09:36:29 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr7:55,165,360
INFO 2026-06-08 09:36:29 MarkDuplicates Tracking 925033 as yet unmatched pairs. 96625 records in RAM.
INFO 2026-06-08 09:36:31 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr7:55,173,948
INFO 2026-06-08 09:36:31 MarkDuplicates Tracking 929654 as yet unmatched pairs. 101246 records in RAM.
INFO 2026-06-08 09:36:33 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr7:55,181,395
INFO 2026-06-08 09:36:33 MarkDuplicates Tracking 926748 as yet unmatched pairs. 98340 records in RAM.
INFO 2026-06-08 09:36:35 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 2s. Last read position: chr7:55,198,737
INFO 2026-06-08 09:36:35 MarkDuplicates Tracking 940974 as yet unmatched pairs. 112566 records in RAM.
INFO 2026-06-08 09:36:37 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 2s. Last read position: chr7:55,200,363
INFO 2026-06-08 09:36:37 MarkDuplicates Tracking 933618 as yet unmatched pairs. 105210 records in RAM.
INFO 2026-06-08 09:36:39 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr7:55,201,291
INFO 2026-06-08 09:36:39 MarkDuplicates Tracking 940833 as yet unmatched pairs. 112425 records in RAM.
INFO 2026-06-08 09:36:42 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 2s. Last read position: chr7:55,202,564
INFO 2026-06-08 09:36:42 MarkDuplicates Tracking 930598 as yet unmatched pairs. 102190 records in RAM.
INFO 2026-06-08 09:36:44 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr7:55,205,288
INFO 2026-06-08 09:36:44 MarkDuplicates Tracking 930801 as yet unmatched pairs. 102392 records in RAM.
INFO 2026-06-08 09:36:46 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr7:55,205,389
INFO 2026-06-08 09:36:46 MarkDuplicates Tracking 918193 as yet unmatched pairs. 89784 records in RAM.
INFO 2026-06-08 09:36:48 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 2s. Last read position: chr7:57,004,362
INFO 2026-06-08 09:36:48 MarkDuplicates Tracking 899159 as yet unmatched pairs. 70749 records in RAM.
INFO 2026-06-08 09:36:50 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr7:72,926,826
INFO 2026-06-08 09:36:50 MarkDuplicates Tracking 897784 as yet unmatched pairs. 69372 records in RAM.
INFO 2026-06-08 09:36:52 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 2s. Last read position: chr7:73,082,939
INFO 2026-06-08 09:36:52 MarkDuplicates Tracking 896823 as yet unmatched pairs. 68410 records in RAM.
INFO 2026-06-08 09:36:53 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr7:73,670,093
INFO 2026-06-08 09:36:53 MarkDuplicates Tracking 896122 as yet unmatched pairs. 67709 records in RAM.
INFO 2026-06-08 09:36:55 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 2s. Last read position: chr7:74,401,510
INFO 2026-06-08 09:36:55 MarkDuplicates Tracking 894308 as yet unmatched pairs. 65891 records in RAM.
INFO 2026-06-08 09:36:57 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:75,310,281
INFO 2026-06-08 09:36:57 MarkDuplicates Tracking 891937 as yet unmatched pairs. 63519 records in RAM.
INFO 2026-06-08 09:36:59 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr7:75,496,746
INFO 2026-06-08 09:36:59 MarkDuplicates Tracking 890480 as yet unmatched pairs. 62062 records in RAM.
INFO 2026-06-08 09:37:01 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr7:76,538,645
INFO 2026-06-08 09:37:01 MarkDuplicates Tracking 888719 as yet unmatched pairs. 60298 records in RAM.
INFO 2026-06-08 09:37:03 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr7:87,509,444
INFO 2026-06-08 09:37:03 MarkDuplicates Tracking 887271 as yet unmatched pairs. 58849 records in RAM.
INFO 2026-06-08 09:37:05 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 2s. Last read position: chr7:94,419,502
INFO 2026-06-08 09:37:05 MarkDuplicates Tracking 885163 as yet unmatched pairs. 56740 records in RAM.
INFO 2026-06-08 09:37:07 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 2s. Last read position: chr7:98,950,139
INFO 2026-06-08 09:37:07 MarkDuplicates Tracking 882879 as yet unmatched pairs. 54455 records in RAM.
INFO 2026-06-08 09:37:09 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr7:100,107,257
INFO 2026-06-08 09:37:09 MarkDuplicates Tracking 880805 as yet unmatched pairs. 52381 records in RAM.
INFO 2026-06-08 09:37:11 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 2s. Last read position: chr7:100,467,573
INFO 2026-06-08 09:37:11 MarkDuplicates Tracking 878881 as yet unmatched pairs. 50457 records in RAM.
INFO 2026-06-08 09:37:13 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr7:100,888,054
INFO 2026-06-08 09:37:13 MarkDuplicates Tracking 875754 as yet unmatched pairs. 47330 records in RAM.
INFO 2026-06-08 09:37:15 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr7:102,355,122
INFO 2026-06-08 09:37:15 MarkDuplicates Tracking 873916 as yet unmatched pairs. 45490 records in RAM.
INFO 2026-06-08 09:37:17 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr7:102,554,342
INFO 2026-06-08 09:37:17 MarkDuplicates Tracking 873502 as yet unmatched pairs. 45076 records in RAM.
INFO 2026-06-08 09:37:18 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr7:102,638,839
INFO 2026-06-08 09:37:18 MarkDuplicates Tracking 873069 as yet unmatched pairs. 44640 records in RAM.
INFO 2026-06-08 09:37:20 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr7:102,787,354
INFO 2026-06-08 09:37:20 MarkDuplicates Tracking 871441 as yet unmatched pairs. 43012 records in RAM.
INFO 2026-06-08 09:37:22 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr7:108,184,589
INFO 2026-06-08 09:37:22 MarkDuplicates Tracking 869857 as yet unmatched pairs. 41427 records in RAM.
INFO 2026-06-08 09:37:24 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr7:121,873,484
INFO 2026-06-08 09:37:24 MarkDuplicates Tracking 882956 as yet unmatched pairs. 54525 records in RAM.
INFO 2026-06-08 09:37:26 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 2s. Last read position: chr7:121,983,780
INFO 2026-06-08 09:37:26 MarkDuplicates Tracking 874002 as yet unmatched pairs. 45543 records in RAM.
INFO 2026-06-08 09:37:28 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr7:122,010,460
INFO 2026-06-08 09:37:28 MarkDuplicates Tracking 873129 as yet unmatched pairs. 44670 records in RAM.
INFO 2026-06-08 09:37:30 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 2s. Last read position: chr7:122,011,274
INFO 2026-06-08 09:37:30 MarkDuplicates Tracking 868703 as yet unmatched pairs. 40244 records in RAM.
INFO 2026-06-08 09:37:33 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 2s. Last read position: chr7:122,012,937
INFO 2026-06-08 09:37:33 MarkDuplicates Tracking 864354 as yet unmatched pairs. 35895 records in RAM.
INFO 2026-06-08 09:37:34 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr7:122,028,634
INFO 2026-06-08 09:37:34 MarkDuplicates Tracking 869773 as yet unmatched pairs. 41314 records in RAM.
INFO 2026-06-08 09:37:37 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr7:122,040,892
INFO 2026-06-08 09:37:37 MarkDuplicates Tracking 861119 as yet unmatched pairs. 32660 records in RAM.
INFO 2026-06-08 09:37:39 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 2s. Last read position: chr7:122,051,884
INFO 2026-06-08 09:37:39 MarkDuplicates Tracking 860075 as yet unmatched pairs. 31616 records in RAM.
INFO 2026-06-08 09:37:41 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr7:122,061,095
INFO 2026-06-08 09:37:41 MarkDuplicates Tracking 855369 as yet unmatched pairs. 26910 records in RAM.
INFO 2026-06-08 09:37:43 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 2s. Last read position: chr7:128,580,041
INFO 2026-06-08 09:37:43 MarkDuplicates Tracking 848743 as yet unmatched pairs. 20282 records in RAM.
INFO 2026-06-08 09:37:45 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr7:133,034,670
INFO 2026-06-08 09:37:45 MarkDuplicates Tracking 846012 as yet unmatched pairs. 17547 records in RAM.
INFO 2026-06-08 09:37:47 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 2s. Last read position: chr7:137,254,910
INFO 2026-06-08 09:37:47 MarkDuplicates Tracking 844278 as yet unmatched pairs. 15813 records in RAM.
INFO 2026-06-08 09:37:49 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr7:139,279,327
INFO 2026-06-08 09:37:49 MarkDuplicates Tracking 841927 as yet unmatched pairs. 13462 records in RAM.
INFO 2026-06-08 09:37:51 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr7:140,702,793
INFO 2026-06-08 09:37:51 MarkDuplicates Tracking 839972 as yet unmatched pairs. 11506 records in RAM.
INFO 2026-06-08 09:37:53 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr7:143,388,210
INFO 2026-06-08 09:37:53 MarkDuplicates Tracking 837496 as yet unmatched pairs. 9024 records in RAM.
INFO 2026-06-08 09:37:55 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr7:149,619,969
INFO 2026-06-08 09:37:55 MarkDuplicates Tracking 835227 as yet unmatched pairs. 6754 records in RAM.
INFO 2026-06-08 09:37:57 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 2s. Last read position: chr7:151,117,176
INFO 2026-06-08 09:37:57 MarkDuplicates Tracking 832625 as yet unmatched pairs. 4151 records in RAM.
INFO 2026-06-08 09:37:59 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 2s. Last read position: chr7:153,887,586
INFO 2026-06-08 09:37:59 MarkDuplicates Tracking 830385 as yet unmatched pairs. 1909 records in RAM.
INFO 2026-06-08 09:38:01 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr8:6,755,088
INFO 2026-06-08 09:38:01 MarkDuplicates Tracking 827851 as yet unmatched pairs. 39068 records in RAM.
INFO 2026-06-08 09:38:04 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr8:13,100,162
INFO 2026-06-08 09:38:04 MarkDuplicates Tracking 825720 as yet unmatched pairs. 36931 records in RAM.
INFO 2026-06-08 09:38:06 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 2s. Last read position: chr8:22,571,789
INFO 2026-06-08 09:38:06 MarkDuplicates Tracking 823439 as yet unmatched pairs. 34648 records in RAM.
INFO 2026-06-08 09:38:08 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr8:26,643,438
INFO 2026-06-08 09:38:08 MarkDuplicates Tracking 821199 as yet unmatched pairs. 32406 records in RAM.
INFO 2026-06-08 09:38:10 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 2s. Last read position: chr8:28,527,267
INFO 2026-06-08 09:38:10 MarkDuplicates Tracking 818963 as yet unmatched pairs. 30167 records in RAM.
INFO 2026-06-08 09:38:12 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:38,314,685
INFO 2026-06-08 09:38:12 MarkDuplicates Tracking 816398 as yet unmatched pairs. 27600 records in RAM.
INFO 2026-06-08 09:38:14 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 2s. Last read position: chr8:41,505,944
INFO 2026-06-08 09:38:14 MarkDuplicates Tracking 814418 as yet unmatched pairs. 25620 records in RAM.
INFO 2026-06-08 09:38:16 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 2s. Last read position: chr8:47,943,319
INFO 2026-06-08 09:38:16 MarkDuplicates Tracking 812004 as yet unmatched pairs. 23204 records in RAM.
INFO 2026-06-08 09:38:18 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr8:67,190,655
INFO 2026-06-08 09:38:18 MarkDuplicates Tracking 809442 as yet unmatched pairs. 20639 records in RAM.
INFO 2026-06-08 09:38:20 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr8:80,558,879
INFO 2026-06-08 09:38:20 MarkDuplicates Tracking 807460 as yet unmatched pairs. 18651 records in RAM.
INFO 2026-06-08 09:38:22 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr8:99,853,771
INFO 2026-06-08 09:38:22 MarkDuplicates Tracking 805498 as yet unmatched pairs. 16677 records in RAM.
INFO 2026-06-08 09:38:24 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr8:115,604,866
INFO 2026-06-08 09:38:24 MarkDuplicates Tracking 803383 as yet unmatched pairs. 14560 records in RAM.
INFO 2026-06-08 09:38:27 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 2s. Last read position: chr8:132,799,072
INFO 2026-06-08 09:38:27 MarkDuplicates Tracking 801093 as yet unmatched pairs. 12268 records in RAM.
INFO 2026-06-08 09:38:28 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr8:142,542,433
INFO 2026-06-08 09:38:28 MarkDuplicates Tracking 798919 as yet unmatched pairs. 10081 records in RAM.
INFO 2026-06-08 09:38:31 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 2s. Last read position: chr8:143,808,906
INFO 2026-06-08 09:38:31 MarkDuplicates Tracking 795725 as yet unmatched pairs. 6884 records in RAM.
INFO 2026-06-08 09:38:33 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr8:143,985,048
INFO 2026-06-08 09:38:33 MarkDuplicates Tracking 792906 as yet unmatched pairs. 4063 records in RAM.
INFO 2026-06-08 09:38:34 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr8:144,504,377
INFO 2026-06-08 09:38:34 MarkDuplicates Tracking 790005 as yet unmatched pairs. 1161 records in RAM.
INFO 2026-06-08 09:38:37 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr9:4,719,214
INFO 2026-06-08 09:38:37 MarkDuplicates Tracking 787579 as yet unmatched pairs. 45110 records in RAM.
INFO 2026-06-08 09:38:39 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr9:19,332,045
INFO 2026-06-08 09:38:39 MarkDuplicates Tracking 785542 as yet unmatched pairs. 43066 records in RAM.
INFO 2026-06-08 09:38:41 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr9:35,722,118
INFO 2026-06-08 09:38:41 MarkDuplicates Tracking 783164 as yet unmatched pairs. 40683 records in RAM.
INFO 2026-06-08 09:38:43 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr9:71,685,075
INFO 2026-06-08 09:38:43 MarkDuplicates Tracking 781292 as yet unmatched pairs. 38770 records in RAM.
INFO 2026-06-08 09:38:45 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr9:84,812,637
INFO 2026-06-08 09:38:45 MarkDuplicates Tracking 779650 as yet unmatched pairs. 37126 records in RAM.
INFO 2026-06-08 09:38:47 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr9:93,259,429
INFO 2026-06-08 09:38:47 MarkDuplicates Tracking 776772 as yet unmatched pairs. 34246 records in RAM.
INFO 2026-06-08 09:38:49 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr9:101,476,073
INFO 2026-06-08 09:38:49 MarkDuplicates Tracking 774610 as yet unmatched pairs. 32079 records in RAM.
INFO 2026-06-08 09:38:51 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr9:112,405,689
INFO 2026-06-08 09:38:51 MarkDuplicates Tracking 772311 as yet unmatched pairs. 29779 records in RAM.
INFO 2026-06-08 09:38:53 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr9:115,090,587
INFO 2026-06-08 09:38:53 MarkDuplicates Tracking 770124 as yet unmatched pairs. 27591 records in RAM.
INFO 2026-06-08 09:38:55 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr9:123,366,091
INFO 2026-06-08 09:38:55 MarkDuplicates Tracking 767681 as yet unmatched pairs. 25146 records in RAM.
INFO 2026-06-08 09:38:57 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 2s. Last read position: chr9:127,593,046
INFO 2026-06-08 09:38:57 MarkDuplicates Tracking 765153 as yet unmatched pairs. 22615 records in RAM.
INFO 2026-06-08 09:38:59 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr9:128,482,815
INFO 2026-06-08 09:38:59 MarkDuplicates Tracking 762623 as yet unmatched pairs. 20069 records in RAM.
INFO 2026-06-08 09:39:01 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 2s. Last read position: chr9:129,177,261
INFO 2026-06-08 09:39:01 MarkDuplicates Tracking 760296 as yet unmatched pairs. 17730 records in RAM.
INFO 2026-06-08 09:39:03 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr9:131,178,386
INFO 2026-06-08 09:39:03 MarkDuplicates Tracking 758372 as yet unmatched pairs. 15803 records in RAM.
INFO 2026-06-08 09:39:05 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr9:132,910,659
INFO 2026-06-08 09:39:05 MarkDuplicates Tracking 756171 as yet unmatched pairs. 13591 records in RAM.
INFO 2026-06-08 09:39:07 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr9:134,785,005
INFO 2026-06-08 09:39:07 MarkDuplicates Tracking 753549 as yet unmatched pairs. 10969 records in RAM.
INFO 2026-06-08 09:39:09 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr9:136,476,830
INFO 2026-06-08 09:39:09 MarkDuplicates Tracking 751601 as yet unmatched pairs. 9019 records in RAM.
INFO 2026-06-08 09:39:11 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr9:136,523,811
INFO 2026-06-08 09:39:11 MarkDuplicates Tracking 748911 as yet unmatched pairs. 6322 records in RAM.
INFO 2026-06-08 09:39:13 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr9:137,040,854
INFO 2026-06-08 09:39:13 MarkDuplicates Tracking 745767 as yet unmatched pairs. 3177 records in RAM.
INFO 2026-06-08 09:39:15 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr9:137,762,712
INFO 2026-06-08 09:39:15 MarkDuplicates Tracking 742870 as yet unmatched pairs. 279 records in RAM.
INFO 2026-06-08 09:39:18 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr10:17,229,432
INFO 2026-06-08 09:39:18 MarkDuplicates Tracking 742635 as yet unmatched pairs. 23144 records in RAM.
INFO 2026-06-08 09:39:19 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr10:25,175,948
INFO 2026-06-08 09:39:19 MarkDuplicates Tracking 738373 as yet unmatched pairs. 18879 records in RAM.
INFO 2026-06-08 09:39:22 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr10:43,387,723
INFO 2026-06-08 09:39:22 MarkDuplicates Tracking 736517 as yet unmatched pairs. 17019 records in RAM.
INFO 2026-06-08 09:39:23 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr10:59,804,469
INFO 2026-06-08 09:39:23 MarkDuplicates Tracking 734871 as yet unmatched pairs. 15373 records in RAM.
INFO 2026-06-08 09:39:25 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr10:73,249,213
INFO 2026-06-08 09:39:25 MarkDuplicates Tracking 732713 as yet unmatched pairs. 13213 records in RAM.
INFO 2026-06-08 09:39:27 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 2s. Last read position: chr10:79,304,047
INFO 2026-06-08 09:39:27 MarkDuplicates Tracking 730303 as yet unmatched pairs. 10799 records in RAM.
INFO 2026-06-08 09:39:29 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr10:92,954,651
INFO 2026-06-08 09:39:29 MarkDuplicates Tracking 728238 as yet unmatched pairs. 8714 records in RAM.
INFO 2026-06-08 09:39:31 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 2s. Last read position: chr10:99,955,579
INFO 2026-06-08 09:39:31 MarkDuplicates Tracking 726122 as yet unmatched pairs. 6596 records in RAM.
INFO 2026-06-08 09:39:33 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 2s. Last read position: chr10:107,164,129
INFO 2026-06-08 09:39:33 MarkDuplicates Tracking 723693 as yet unmatched pairs. 4167 records in RAM.
INFO 2026-06-08 09:39:35 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr10:122,462,096
INFO 2026-06-08 09:39:35 MarkDuplicates Tracking 722101 as yet unmatched pairs. 2570 records in RAM.
INFO 2026-06-08 09:39:38 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr11:308,334
INFO 2026-06-08 09:39:38 MarkDuplicates Tracking 719215 as yet unmatched pairs. 72003 records in RAM.
INFO 2026-06-08 09:39:40 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:788,462
INFO 2026-06-08 09:39:40 MarkDuplicates Tracking 716452 as yet unmatched pairs. 69240 records in RAM.
INFO 2026-06-08 09:39:42 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr11:2,445,270
INFO 2026-06-08 09:39:42 MarkDuplicates Tracking 713741 as yet unmatched pairs. 66528 records in RAM.
INFO 2026-06-08 09:39:44 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr11:6,621,888
INFO 2026-06-08 09:39:44 MarkDuplicates Tracking 712206 as yet unmatched pairs. 64993 records in RAM.
INFO 2026-06-08 09:39:46 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:9,204,260
INFO 2026-06-08 09:39:46 MarkDuplicates Tracking 708981 as yet unmatched pairs. 61768 records in RAM.
INFO 2026-06-08 09:39:48 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr11:16,782,451
INFO 2026-06-08 09:39:48 MarkDuplicates Tracking 706740 as yet unmatched pairs. 59523 records in RAM.
INFO 2026-06-08 09:39:50 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:32,587,137
INFO 2026-06-08 09:39:50 MarkDuplicates Tracking 704658 as yet unmatched pairs. 57435 records in RAM.
INFO 2026-06-08 09:39:52 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr11:35,663,398
INFO 2026-06-08 09:39:52 MarkDuplicates Tracking 702157 as yet unmatched pairs. 54932 records in RAM.
INFO 2026-06-08 09:39:54 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 2s. Last read position: chr11:46,367,337
INFO 2026-06-08 09:39:54 MarkDuplicates Tracking 699986 as yet unmatched pairs. 52759 records in RAM.
INFO 2026-06-08 09:39:56 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:47,424,094
INFO 2026-06-08 09:39:56 MarkDuplicates Tracking 697688 as yet unmatched pairs. 50461 records in RAM.
INFO 2026-06-08 09:39:58 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr11:58,579,344
INFO 2026-06-08 09:39:58 MarkDuplicates Tracking 695332 as yet unmatched pairs. 48105 records in RAM.
INFO 2026-06-08 09:40:00 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:61,810,774
INFO 2026-06-08 09:40:00 MarkDuplicates Tracking 692734 as yet unmatched pairs. 45490 records in RAM.
INFO 2026-06-08 09:40:02 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr11:62,605,717
INFO 2026-06-08 09:40:02 MarkDuplicates Tracking 690405 as yet unmatched pairs. 43159 records in RAM.
INFO 2026-06-08 09:40:04 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 2s. Last read position: chr11:63,911,932
INFO 2026-06-08 09:40:04 MarkDuplicates Tracking 688008 as yet unmatched pairs. 40761 records in RAM.
INFO 2026-06-08 09:40:06 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:64,767,067
INFO 2026-06-08 09:40:06 MarkDuplicates Tracking 685501 as yet unmatched pairs. 38253 records in RAM.
INFO 2026-06-08 09:40:08 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 2s. Last read position: chr11:65,539,741
INFO 2026-06-08 09:40:08 MarkDuplicates Tracking 682752 as yet unmatched pairs. 35503 records in RAM.
INFO 2026-06-08 09:40:10 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:65,658,698
INFO 2026-06-08 09:40:10 MarkDuplicates Tracking 679985 as yet unmatched pairs. 32736 records in RAM.
INFO 2026-06-08 09:40:13 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr11:66,332,380
INFO 2026-06-08 09:40:13 MarkDuplicates Tracking 677198 as yet unmatched pairs. 29949 records in RAM.
INFO 2026-06-08 09:40:15 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr11:67,428,605
INFO 2026-06-08 09:40:15 MarkDuplicates Tracking 674433 as yet unmatched pairs. 27183 records in RAM.
INFO 2026-06-08 09:40:17 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,881
INFO 2026-06-08 09:40:17 MarkDuplicates Tracking 672599 as yet unmatched pairs. 25346 records in RAM.
INFO 2026-06-08 09:40:19 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 2s. Last read position: chr11:72,238,040
INFO 2026-06-08 09:40:19 MarkDuplicates Tracking 669938 as yet unmatched pairs. 22684 records in RAM.
INFO 2026-06-08 09:40:21 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:75,404,744
INFO 2026-06-08 09:40:21 MarkDuplicates Tracking 667645 as yet unmatched pairs. 20388 records in RAM.
INFO 2026-06-08 09:40:23 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr11:82,733,564
INFO 2026-06-08 09:40:23 MarkDuplicates Tracking 665879 as yet unmatched pairs. 18620 records in RAM.
INFO 2026-06-08 09:40:25 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr11:95,090,021
INFO 2026-06-08 09:40:25 MarkDuplicates Tracking 662864 as yet unmatched pairs. 15605 records in RAM.
INFO 2026-06-08 09:40:27 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr11:106,077,688
INFO 2026-06-08 09:40:27 MarkDuplicates Tracking 660467 as yet unmatched pairs. 13192 records in RAM.
INFO 2026-06-08 09:40:29 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 2s. Last read position: chr11:115,176,553
INFO 2026-06-08 09:40:29 MarkDuplicates Tracking 658553 as yet unmatched pairs. 11277 records in RAM.
INFO 2026-06-08 09:40:31 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:118,504,854
INFO 2026-06-08 09:40:31 MarkDuplicates Tracking 656212 as yet unmatched pairs. 8935 records in RAM.
INFO 2026-06-08 09:40:33 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr11:119,112,737
INFO 2026-06-08 09:40:33 MarkDuplicates Tracking 653752 as yet unmatched pairs. 6475 records in RAM.
INFO 2026-06-08 09:40:35 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 2s. Last read position: chr11:123,726,294
INFO 2026-06-08 09:40:35 MarkDuplicates Tracking 651470 as yet unmatched pairs. 4192 records in RAM.
INFO 2026-06-08 09:40:37 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr11:128,969,190
INFO 2026-06-08 09:40:37 MarkDuplicates Tracking 649242 as yet unmatched pairs. 1959 records in RAM.
INFO 2026-06-08 09:40:40 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 3s. Last read position: chr12:440,661
INFO 2026-06-08 09:40:40 MarkDuplicates Tracking 646965 as yet unmatched pairs. 65539 records in RAM.
INFO 2026-06-08 09:40:42 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:5,976,236
INFO 2026-06-08 09:40:42 MarkDuplicates Tracking 644887 as yet unmatched pairs. 63461 records in RAM.
INFO 2026-06-08 09:40:44 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 2s. Last read position: chr12:6,651,208
INFO 2026-06-08 09:40:44 MarkDuplicates Tracking 642530 as yet unmatched pairs. 61103 records in RAM.
INFO 2026-06-08 09:40:46 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr12:6,941,396
INFO 2026-06-08 09:40:46 MarkDuplicates Tracking 640441 as yet unmatched pairs. 59014 records in RAM.
INFO 2026-06-08 09:40:48 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:10,324,381
INFO 2026-06-08 09:40:48 MarkDuplicates Tracking 637943 as yet unmatched pairs. 56515 records in RAM.
INFO 2026-06-08 09:40:50 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr12:20,552,897
INFO 2026-06-08 09:40:50 MarkDuplicates Tracking 635719 as yet unmatched pairs. 54291 records in RAM.
INFO 2026-06-08 09:40:52 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:32,327,614
INFO 2026-06-08 09:40:52 MarkDuplicates Tracking 633537 as yet unmatched pairs. 52108 records in RAM.
INFO 2026-06-08 09:40:54 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr12:48,772,348
INFO 2026-06-08 09:40:54 MarkDuplicates Tracking 631482 as yet unmatched pairs. 50048 records in RAM.
INFO 2026-06-08 09:40:56 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr12:49,052,215
INFO 2026-06-08 09:40:56 MarkDuplicates Tracking 629439 as yet unmatched pairs. 47998 records in RAM.
INFO 2026-06-08 09:40:58 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:49,186,447
INFO 2026-06-08 09:40:58 MarkDuplicates Tracking 629287 as yet unmatched pairs. 47845 records in RAM.
INFO 2026-06-08 09:41:00 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr12:50,505,125
INFO 2026-06-08 09:41:00 MarkDuplicates Tracking 625677 as yet unmatched pairs. 44235 records in RAM.
INFO 2026-06-08 09:41:02 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:53,307,668
INFO 2026-06-08 09:41:02 MarkDuplicates Tracking 623381 as yet unmatched pairs. 41938 records in RAM.
INFO 2026-06-08 09:41:04 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr12:54,283,877
INFO 2026-06-08 09:41:04 MarkDuplicates Tracking 622000 as yet unmatched pairs. 40555 records in RAM.
INFO 2026-06-08 09:41:06 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:55,703,122
INFO 2026-06-08 09:41:06 MarkDuplicates Tracking 619292 as yet unmatched pairs. 37847 records in RAM.
INFO 2026-06-08 09:41:08 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr12:56,255,789
INFO 2026-06-08 09:41:08 MarkDuplicates Tracking 616682 as yet unmatched pairs. 35237 records in RAM.
INFO 2026-06-08 09:41:11 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr12:57,092,560
INFO 2026-06-08 09:41:11 MarkDuplicates Tracking 614705 as yet unmatched pairs. 33258 records in RAM.
INFO 2026-06-08 09:41:12 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:57,173,907
INFO 2026-06-08 09:41:12 MarkDuplicates Tracking 613232 as yet unmatched pairs. 31784 records in RAM.
INFO 2026-06-08 09:41:15 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 2s. Last read position: chr12:57,199,314
INFO 2026-06-08 09:41:15 MarkDuplicates Tracking 609752 as yet unmatched pairs. 28303 records in RAM.
INFO 2026-06-08 09:41:17 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr12:57,526,506
INFO 2026-06-08 09:41:17 MarkDuplicates Tracking 607323 as yet unmatched pairs. 25874 records in RAM.
INFO 2026-06-08 09:41:19 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr12:67,306,563
INFO 2026-06-08 09:41:19 MarkDuplicates Tracking 604757 as yet unmatched pairs. 23308 records in RAM.
INFO 2026-06-08 09:41:21 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr12:76,822,418
INFO 2026-06-08 09:41:21 MarkDuplicates Tracking 602544 as yet unmatched pairs. 21092 records in RAM.
INFO 2026-06-08 09:41:23 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr12:98,533,620
INFO 2026-06-08 09:41:23 MarkDuplicates Tracking 600502 as yet unmatched pairs. 19049 records in RAM.
INFO 2026-06-08 09:41:25 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 2s. Last read position: chr12:107,752,182
INFO 2026-06-08 09:41:25 MarkDuplicates Tracking 598271 as yet unmatched pairs. 16818 records in RAM.
INFO 2026-06-08 09:41:26 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:111,598,946
INFO 2026-06-08 09:41:26 MarkDuplicates Tracking 595797 as yet unmatched pairs. 14343 records in RAM.
INFO 2026-06-08 09:41:29 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 2s. Last read position: chr12:113,959,381
INFO 2026-06-08 09:41:29 MarkDuplicates Tracking 593436 as yet unmatched pairs. 11981 records in RAM.
INFO 2026-06-08 09:41:31 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr12:120,496,414
INFO 2026-06-08 09:41:31 MarkDuplicates Tracking 591306 as yet unmatched pairs. 9845 records in RAM.
INFO 2026-06-08 09:41:32 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:122,591,403
INFO 2026-06-08 09:41:32 MarkDuplicates Tracking 588785 as yet unmatched pairs. 7323 records in RAM.
INFO 2026-06-08 09:41:35 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 2s. Last read position: chr12:124,337,151
INFO 2026-06-08 09:41:35 MarkDuplicates Tracking 587649 as yet unmatched pairs. 6186 records in RAM.
INFO 2026-06-08 09:41:36 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr12:131,961,644
INFO 2026-06-08 09:41:36 MarkDuplicates Tracking 583959 as yet unmatched pairs. 2496 records in RAM.
INFO 2026-06-08 09:41:39 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 2s. Last read position: chr13:19,993,441
INFO 2026-06-08 09:41:39 MarkDuplicates Tracking 581375 as yet unmatched pairs. 20273 records in RAM.
INFO 2026-06-08 09:41:41 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr13:25,170,808
INFO 2026-06-08 09:41:41 MarkDuplicates Tracking 579211 as yet unmatched pairs. 18108 records in RAM.
INFO 2026-06-08 09:41:43 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr13:36,335,721
INFO 2026-06-08 09:41:43 MarkDuplicates Tracking 576983 as yet unmatched pairs. 15871 records in RAM.
INFO 2026-06-08 09:41:45 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr13:45,339,560
INFO 2026-06-08 09:41:45 MarkDuplicates Tracking 575114 as yet unmatched pairs. 14002 records in RAM.
INFO 2026-06-08 09:41:47 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr13:57,633,101
INFO 2026-06-08 09:41:47 MarkDuplicates Tracking 572729 as yet unmatched pairs. 11617 records in RAM.
INFO 2026-06-08 09:41:49 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr13:77,918,434
INFO 2026-06-08 09:41:49 MarkDuplicates Tracking 571025 as yet unmatched pairs. 9910 records in RAM.
INFO 2026-06-08 09:41:51 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr13:106,534,848
INFO 2026-06-08 09:41:51 MarkDuplicates Tracking 567996 as yet unmatched pairs. 6878 records in RAM.
INFO 2026-06-08 09:41:54 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr13:110,179,328
INFO 2026-06-08 09:41:54 MarkDuplicates Tracking 565072 as yet unmatched pairs. 3954 records in RAM.
INFO 2026-06-08 09:41:56 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr13:112,824,349
INFO 2026-06-08 09:41:56 MarkDuplicates Tracking 562449 as yet unmatched pairs. 1329 records in RAM.
INFO 2026-06-08 09:41:58 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr14:21,074,349
INFO 2026-06-08 09:41:58 MarkDuplicates Tracking 560262 as yet unmatched pairs. 35268 records in RAM.
INFO 2026-06-08 09:42:00 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr14:22,845,281
INFO 2026-06-08 09:42:00 MarkDuplicates Tracking 557786 as yet unmatched pairs. 32792 records in RAM.
INFO 2026-06-08 09:42:02 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr14:23,525,633
INFO 2026-06-08 09:42:02 MarkDuplicates Tracking 555277 as yet unmatched pairs. 30283 records in RAM.
INFO 2026-06-08 09:42:04 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr14:26,472,354
INFO 2026-06-08 09:42:04 MarkDuplicates Tracking 553868 as yet unmatched pairs. 28873 records in RAM.
INFO 2026-06-08 09:42:06 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr14:32,983,965
INFO 2026-06-08 09:42:06 MarkDuplicates Tracking 550959 as yet unmatched pairs. 25963 records in RAM.
INFO 2026-06-08 09:42:08 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr14:50,118,551
INFO 2026-06-08 09:42:08 MarkDuplicates Tracking 548797 as yet unmatched pairs. 23795 records in RAM.
INFO 2026-06-08 09:42:10 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 2s. Last read position: chr14:55,667,269
INFO 2026-06-08 09:42:10 MarkDuplicates Tracking 546639 as yet unmatched pairs. 21635 records in RAM.
INFO 2026-06-08 09:42:12 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr14:64,225,369
INFO 2026-06-08 09:42:12 MarkDuplicates Tracking 544627 as yet unmatched pairs. 19621 records in RAM.
INFO 2026-06-08 09:42:14 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr14:69,768,814
INFO 2026-06-08 09:42:14 MarkDuplicates Tracking 542380 as yet unmatched pairs. 17371 records in RAM.
INFO 2026-06-08 09:42:16 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr14:73,719,412
INFO 2026-06-08 09:42:16 MarkDuplicates Tracking 539918 as yet unmatched pairs. 14909 records in RAM.
INFO 2026-06-08 09:42:18 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 2s. Last read position: chr14:75,281,221
INFO 2026-06-08 09:42:18 MarkDuplicates Tracking 538086 as yet unmatched pairs. 13071 records in RAM.
INFO 2026-06-08 09:42:20 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr14:90,288,497
INFO 2026-06-08 09:42:20 MarkDuplicates Tracking 535397 as yet unmatched pairs. 10378 records in RAM.
INFO 2026-06-08 09:42:22 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr14:99,510,189
INFO 2026-06-08 09:42:22 MarkDuplicates Tracking 533143 as yet unmatched pairs. 8106 records in RAM.
INFO 2026-06-08 09:42:24 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr14:102,083,643
INFO 2026-06-08 09:42:24 MarkDuplicates Tracking 530764 as yet unmatched pairs. 5723 records in RAM.
INFO 2026-06-08 09:42:26 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr14:103,698,804
INFO 2026-06-08 09:42:26 MarkDuplicates Tracking 528422 as yet unmatched pairs. 3381 records in RAM.
INFO 2026-06-08 09:42:28 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr14:105,707,372
INFO 2026-06-08 09:42:28 MarkDuplicates Tracking 525348 as yet unmatched pairs. 305 records in RAM.
INFO 2026-06-08 09:42:31 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr15:28,229,705
INFO 2026-06-08 09:42:31 MarkDuplicates Tracking 523223 as yet unmatched pairs. 34358 records in RAM.
INFO 2026-06-08 09:42:32 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr15:32,641,733
INFO 2026-06-08 09:42:32 MarkDuplicates Tracking 521583 as yet unmatched pairs. 32715 records in RAM.
INFO 2026-06-08 09:42:35 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr15:34,528,732
INFO 2026-06-08 09:42:35 MarkDuplicates Tracking 519513 as yet unmatched pairs. 30644 records in RAM.
INFO 2026-06-08 09:42:36 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr15:41,669,767
INFO 2026-06-08 09:42:36 MarkDuplicates Tracking 517542 as yet unmatched pairs. 28670 records in RAM.
INFO 2026-06-08 09:42:39 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 2s. Last read position: chr15:43,361,319
INFO 2026-06-08 09:42:39 MarkDuplicates Tracking 515199 as yet unmatched pairs. 26327 records in RAM.
INFO 2026-06-08 09:42:40 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr15:44,615,469
INFO 2026-06-08 09:42:40 MarkDuplicates Tracking 513218 as yet unmatched pairs. 24345 records in RAM.
INFO 2026-06-08 09:42:42 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr15:52,061,306
INFO 2026-06-08 09:42:42 MarkDuplicates Tracking 510994 as yet unmatched pairs. 22118 records in RAM.
INFO 2026-06-08 09:42:44 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr15:57,273,124
INFO 2026-06-08 09:42:44 MarkDuplicates Tracking 510413 as yet unmatched pairs. 21537 records in RAM.
INFO 2026-06-08 09:42:47 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 2s. Last read position: chr15:64,127,240
INFO 2026-06-08 09:42:47 MarkDuplicates Tracking 506981 as yet unmatched pairs. 18104 records in RAM.
INFO 2026-06-08 09:42:49 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr15:68,176,629
INFO 2026-06-08 09:42:49 MarkDuplicates Tracking 504570 as yet unmatched pairs. 15691 records in RAM.
INFO 2026-06-08 09:42:51 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr15:73,708,383
INFO 2026-06-08 09:42:51 MarkDuplicates Tracking 502689 as yet unmatched pairs. 13801 records in RAM.
INFO 2026-06-08 09:42:53 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr15:75,490,235
INFO 2026-06-08 09:42:53 MarkDuplicates Tracking 499925 as yet unmatched pairs. 11035 records in RAM.
INFO 2026-06-08 09:42:55 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr15:78,886,204
INFO 2026-06-08 09:42:55 MarkDuplicates Tracking 497707 as yet unmatched pairs. 8817 records in RAM.
INFO 2026-06-08 09:42:57 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr15:84,817,546
INFO 2026-06-08 09:42:57 MarkDuplicates Tracking 495608 as yet unmatched pairs. 6715 records in RAM.
INFO 2026-06-08 09:42:59 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr15:88,655,435
INFO 2026-06-08 09:42:59 MarkDuplicates Tracking 493513 as yet unmatched pairs. 4620 records in RAM.
INFO 2026-06-08 09:43:01 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 2s. Last read position: chr15:92,734,056
INFO 2026-06-08 09:43:01 MarkDuplicates Tracking 491124 as yet unmatched pairs. 2229 records in RAM.
INFO 2026-06-08 09:43:04 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr16:16,697
INFO 2026-06-08 09:43:04 MarkDuplicates Tracking 489057 as yet unmatched pairs. 75402 records in RAM.
INFO 2026-06-08 09:43:06 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:666,514
INFO 2026-06-08 09:43:06 MarkDuplicates Tracking 486499 as yet unmatched pairs. 72844 records in RAM.
INFO 2026-06-08 09:43:08 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr16:1,351,379
INFO 2026-06-08 09:43:08 MarkDuplicates Tracking 482939 as yet unmatched pairs. 69283 records in RAM.
INFO 2026-06-08 09:43:10 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:1,998,701
INFO 2026-06-08 09:43:10 MarkDuplicates Tracking 479929 as yet unmatched pairs. 66273 records in RAM.
INFO 2026-06-08 09:43:12 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr16:2,111,108
INFO 2026-06-08 09:43:12 MarkDuplicates Tracking 477309 as yet unmatched pairs. 63653 records in RAM.
INFO 2026-06-08 09:43:14 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:2,581,347
INFO 2026-06-08 09:43:14 MarkDuplicates Tracking 474493 as yet unmatched pairs. 60836 records in RAM.
INFO 2026-06-08 09:43:16 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 2s. Last read position: chr16:2,767,670
INFO 2026-06-08 09:43:16 MarkDuplicates Tracking 473039 as yet unmatched pairs. 59382 records in RAM.
INFO 2026-06-08 09:43:18 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr16:3,731,254
INFO 2026-06-08 09:43:18 MarkDuplicates Tracking 470024 as yet unmatched pairs. 56365 records in RAM.
INFO 2026-06-08 09:43:20 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:8,768,203
INFO 2026-06-08 09:43:20 MarkDuplicates Tracking 467754 as yet unmatched pairs. 54094 records in RAM.
INFO 2026-06-08 09:43:22 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr16:14,628,172
INFO 2026-06-08 09:43:22 MarkDuplicates Tracking 465514 as yet unmatched pairs. 51852 records in RAM.
INFO 2026-06-08 09:43:23 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:14,933,212
INFO 2026-06-08 09:43:23 MarkDuplicates Tracking 464725 as yet unmatched pairs. 51063 records in RAM.
INFO 2026-06-08 09:43:25 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:15,884,134
INFO 2026-06-08 09:43:25 MarkDuplicates Tracking 462978 as yet unmatched pairs. 49316 records in RAM.
INFO 2026-06-08 09:43:27 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr16:16,350,272
INFO 2026-06-08 09:43:27 MarkDuplicates Tracking 462635 as yet unmatched pairs. 48973 records in RAM.
INFO 2026-06-08 09:43:28 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:18,343,901
INFO 2026-06-08 09:43:28 MarkDuplicates Tracking 462206 as yet unmatched pairs. 48543 records in RAM.
INFO 2026-06-08 09:43:30 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr16:18,394,669
INFO 2026-06-08 09:43:30 MarkDuplicates Tracking 460981 as yet unmatched pairs. 47318 records in RAM.
INFO 2026-06-08 09:43:32 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:20,742,509
INFO 2026-06-08 09:43:32 MarkDuplicates Tracking 458933 as yet unmatched pairs. 45270 records in RAM.
INFO 2026-06-08 09:43:33 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:21,456,285
INFO 2026-06-08 09:43:33 MarkDuplicates Tracking 458307 as yet unmatched pairs. 44644 records in RAM.
INFO 2026-06-08 09:43:35 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:21,896,527
INFO 2026-06-08 09:43:35 MarkDuplicates Tracking 457421 as yet unmatched pairs. 43758 records in RAM.
INFO 2026-06-08 09:43:36 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,960
INFO 2026-06-08 09:43:36 MarkDuplicates Tracking 457588 as yet unmatched pairs. 43925 records in RAM.
INFO 2026-06-08 09:43:38 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:27,469,445
INFO 2026-06-08 09:43:38 MarkDuplicates Tracking 455241 as yet unmatched pairs. 41578 records in RAM.
INFO 2026-06-08 09:43:40 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr16:28,832,846
INFO 2026-06-08 09:43:40 MarkDuplicates Tracking 453567 as yet unmatched pairs. 39904 records in RAM.
INFO 2026-06-08 09:43:42 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:29,455,840
INFO 2026-06-08 09:43:42 MarkDuplicates Tracking 452120 as yet unmatched pairs. 38456 records in RAM.
INFO 2026-06-08 09:43:44 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:29,859,472
INFO 2026-06-08 09:43:44 MarkDuplicates Tracking 450404 as yet unmatched pairs. 36739 records in RAM.
INFO 2026-06-08 09:43:46 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr16:30,224,117
INFO 2026-06-08 09:43:46 MarkDuplicates Tracking 448154 as yet unmatched pairs. 34489 records in RAM.
INFO 2026-06-08 09:43:48 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr16:30,711,833
INFO 2026-06-08 09:43:48 MarkDuplicates Tracking 446201 as yet unmatched pairs. 32534 records in RAM.
INFO 2026-06-08 09:43:49 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr16:31,085,042
INFO 2026-06-08 09:43:49 MarkDuplicates Tracking 443798 as yet unmatched pairs. 30126 records in RAM.
INFO 2026-06-08 09:43:51 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 2s. Last read position: chr16:31,490,257
INFO 2026-06-08 09:43:51 MarkDuplicates Tracking 441296 as yet unmatched pairs. 27624 records in RAM.
INFO 2026-06-08 09:43:53 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:51,140,531
INFO 2026-06-08 09:43:53 MarkDuplicates Tracking 441309 as yet unmatched pairs. 27628 records in RAM.
INFO 2026-06-08 09:43:55 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 2s. Last read position: chr16:56,514,647
INFO 2026-06-08 09:43:55 MarkDuplicates Tracking 436975 as yet unmatched pairs. 23288 records in RAM.
INFO 2026-06-08 09:43:57 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr16:57,246,086
INFO 2026-06-08 09:43:57 MarkDuplicates Tracking 434487 as yet unmatched pairs. 20798 records in RAM.
INFO 2026-06-08 09:43:59 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr16:58,511,441
INFO 2026-06-08 09:43:59 MarkDuplicates Tracking 432629 as yet unmatched pairs. 18940 records in RAM.
INFO 2026-06-08 09:44:02 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 2s. Last read position: chr16:67,612,033
INFO 2026-06-08 09:44:02 MarkDuplicates Tracking 429979 as yet unmatched pairs. 16289 records in RAM.
INFO 2026-06-08 09:44:03 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr16:69,693,504
INFO 2026-06-08 09:44:03 MarkDuplicates Tracking 427434 as yet unmatched pairs. 13743 records in RAM.
INFO 2026-06-08 09:44:05 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 2s. Last read position: chr16:70,664,430
INFO 2026-06-08 09:44:05 MarkDuplicates Tracking 426214 as yet unmatched pairs. 12519 records in RAM.
INFO 2026-06-08 09:44:07 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr16:72,959,288
INFO 2026-06-08 09:44:07 MarkDuplicates Tracking 423121 as yet unmatched pairs. 9425 records in RAM.
INFO 2026-06-08 09:44:09 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 2s. Last read position: chr16:81,678,605
INFO 2026-06-08 09:44:09 MarkDuplicates Tracking 420724 as yet unmatched pairs. 7025 records in RAM.
INFO 2026-06-08 09:44:11 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr16:88,434,246
INFO 2026-06-08 09:44:11 MarkDuplicates Tracking 418363 as yet unmatched pairs. 4661 records in RAM.
INFO 2026-06-08 09:44:13 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 2s. Last read position: chr16:89,544,703
INFO 2026-06-08 09:44:13 MarkDuplicates Tracking 415903 as yet unmatched pairs. 2200 records in RAM.
INFO 2026-06-08 09:44:16 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 3s. Last read position: chr17:1,072,647
INFO 2026-06-08 09:44:16 MarkDuplicates Tracking 413407 as yet unmatched pairs. 93441 records in RAM.
INFO 2026-06-08 09:44:18 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr17:1,725,107
INFO 2026-06-08 09:44:18 MarkDuplicates Tracking 411033 as yet unmatched pairs. 91067 records in RAM.
INFO 2026-06-08 09:44:20 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 2s. Last read position: chr17:4,170,743
INFO 2026-06-08 09:44:20 MarkDuplicates Tracking 408522 as yet unmatched pairs. 88556 records in RAM.
INFO 2026-06-08 09:44:22 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr17:5,377,193
INFO 2026-06-08 09:44:22 MarkDuplicates Tracking 406390 as yet unmatched pairs. 86424 records in RAM.
INFO 2026-06-08 09:44:24 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 2s. Last read position: chr17:7,257,025
INFO 2026-06-08 09:44:24 MarkDuplicates Tracking 403760 as yet unmatched pairs. 83793 records in RAM.
INFO 2026-06-08 09:44:26 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,088
INFO 2026-06-08 09:44:26 MarkDuplicates Tracking 401443 as yet unmatched pairs. 81475 records in RAM.
INFO 2026-06-08 09:44:29 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 2s. Last read position: chr17:7,847,546
INFO 2026-06-08 09:44:29 MarkDuplicates Tracking 399196 as yet unmatched pairs. 79228 records in RAM.
INFO 2026-06-08 09:44:31 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 2s. Last read position: chr17:8,888,449
INFO 2026-06-08 09:44:31 MarkDuplicates Tracking 396798 as yet unmatched pairs. 76829 records in RAM.
INFO 2026-06-08 09:44:32 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,140
INFO 2026-06-08 09:44:32 MarkDuplicates Tracking 395484 as yet unmatched pairs. 75515 records in RAM.
INFO 2026-06-08 09:44:35 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 2s. Last read position: chr17:18,039,504
INFO 2026-06-08 09:44:35 MarkDuplicates Tracking 392099 as yet unmatched pairs. 72130 records in RAM.
INFO 2026-06-08 09:44:36 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr17:20,232,357
INFO 2026-06-08 09:44:36 MarkDuplicates Tracking 390952 as yet unmatched pairs. 70982 records in RAM.
INFO 2026-06-08 09:44:39 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 2s. Last read position: chr17:28,634,735
INFO 2026-06-08 09:44:39 MarkDuplicates Tracking 387874 as yet unmatched pairs. 67904 records in RAM.
INFO 2026-06-08 09:44:40 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr17:29,287,247
INFO 2026-06-08 09:44:40 MarkDuplicates Tracking 385427 as yet unmatched pairs. 65456 records in RAM.
INFO 2026-06-08 09:44:43 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 2s. Last read position: chr17:32,350,211
INFO 2026-06-08 09:44:43 MarkDuplicates Tracking 383573 as yet unmatched pairs. 63600 records in RAM.
INFO 2026-06-08 09:44:44 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr17:36,949,122
INFO 2026-06-08 09:44:44 MarkDuplicates Tracking 381499 as yet unmatched pairs. 61526 records in RAM.
INFO 2026-06-08 09:44:46 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr17:38,705,712
INFO 2026-06-08 09:44:46 MarkDuplicates Tracking 380083 as yet unmatched pairs. 60110 records in RAM.
INFO 2026-06-08 09:44:48 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 2s. Last read position: chr17:39,715,809
INFO 2026-06-08 09:44:48 MarkDuplicates Tracking 377738 as yet unmatched pairs. 57764 records in RAM.
INFO 2026-06-08 09:44:50 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 1s. Last read position: chr17:41,727,100
INFO 2026-06-08 09:44:50 MarkDuplicates Tracking 375417 as yet unmatched pairs. 55442 records in RAM.
INFO 2026-06-08 09:44:52 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 2s. Last read position: chr17:42,404,961
INFO 2026-06-08 09:44:52 MarkDuplicates Tracking 372996 as yet unmatched pairs. 53020 records in RAM.
INFO 2026-06-08 09:44:54 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 1s. Last read position: chr17:44,075,371
INFO 2026-06-08 09:44:54 MarkDuplicates Tracking 370713 as yet unmatched pairs. 50737 records in RAM.
INFO 2026-06-08 09:44:56 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 2s. Last read position: chr17:44,908,063
INFO 2026-06-08 09:44:56 MarkDuplicates Tracking 374801 as yet unmatched pairs. 54824 records in RAM.
INFO 2026-06-08 09:44:59 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 2s. Last read position: chr17:44,915,202
INFO 2026-06-08 09:44:59 MarkDuplicates Tracking 373794 as yet unmatched pairs. 53817 records in RAM.
INFO 2026-06-08 09:45:00 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr17:46,031,516
INFO 2026-06-08 09:45:00 MarkDuplicates Tracking 363795 as yet unmatched pairs. 43818 records in RAM.
INFO 2026-06-08 09:45:02 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr17:47,922,997
INFO 2026-06-08 09:45:02 MarkDuplicates Tracking 361759 as yet unmatched pairs. 41782 records in RAM.
INFO 2026-06-08 09:45:04 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,653
INFO 2026-06-08 09:45:04 MarkDuplicates Tracking 359801 as yet unmatched pairs. 39821 records in RAM.
INFO 2026-06-08 09:45:06 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,026
INFO 2026-06-08 09:45:06 MarkDuplicates Tracking 359197 as yet unmatched pairs. 39217 records in RAM.
INFO 2026-06-08 09:45:08 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,323
INFO 2026-06-08 09:45:08 MarkDuplicates Tracking 355933 as yet unmatched pairs. 35953 records in RAM.
INFO 2026-06-08 09:45:11 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 2s. Last read position: chr17:50,201,413
INFO 2026-06-08 09:45:11 MarkDuplicates Tracking 352959 as yet unmatched pairs. 32979 records in RAM.
INFO 2026-06-08 09:45:13 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 2s. Last read position: chr17:57,627,187
INFO 2026-06-08 09:45:13 MarkDuplicates Tracking 349437 as yet unmatched pairs. 29456 records in RAM.
INFO 2026-06-08 09:45:15 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 2s. Last read position: chr17:59,682,319
INFO 2026-06-08 09:45:15 MarkDuplicates Tracking 347414 as yet unmatched pairs. 27433 records in RAM.
INFO 2026-06-08 09:45:17 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 2s. Last read position: chr17:62,682,239
INFO 2026-06-08 09:45:17 MarkDuplicates Tracking 344560 as yet unmatched pairs. 24578 records in RAM.
INFO 2026-06-08 09:45:19 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr17:64,800,115
INFO 2026-06-08 09:45:19 MarkDuplicates Tracking 342180 as yet unmatched pairs. 22198 records in RAM.
INFO 2026-06-08 09:45:21 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 2s. Last read position: chr17:68,522,792
INFO 2026-06-08 09:45:21 MarkDuplicates Tracking 340497 as yet unmatched pairs. 20513 records in RAM.
INFO 2026-06-08 09:45:23 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr17:73,286,430
INFO 2026-06-08 09:45:23 MarkDuplicates Tracking 338746 as yet unmatched pairs. 18762 records in RAM.
INFO 2026-06-08 09:45:25 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 2s. Last read position: chr17:75,736,122
INFO 2026-06-08 09:45:25 MarkDuplicates Tracking 335414 as yet unmatched pairs. 15424 records in RAM.
INFO 2026-06-08 09:45:27 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 2s. Last read position: chr17:76,270,313
INFO 2026-06-08 09:45:27 MarkDuplicates Tracking 333234 as yet unmatched pairs. 13244 records in RAM.
INFO 2026-06-08 09:45:29 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr17:78,117,295
INFO 2026-06-08 09:45:29 MarkDuplicates Tracking 330290 as yet unmatched pairs. 10300 records in RAM.
INFO 2026-06-08 09:45:31 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 2s. Last read position: chr17:80,346,701
INFO 2026-06-08 09:45:31 MarkDuplicates Tracking 327931 as yet unmatched pairs. 7941 records in RAM.
INFO 2026-06-08 09:45:33 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:81,565,257
INFO 2026-06-08 09:45:33 MarkDuplicates Tracking 325274 as yet unmatched pairs. 5284 records in RAM.
INFO 2026-06-08 09:45:35 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 2s. Last read position: chr17:82,079,452
INFO 2026-06-08 09:45:35 MarkDuplicates Tracking 322379 as yet unmatched pairs. 2387 records in RAM.
INFO 2026-06-08 09:45:37 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 2s. Last read position: chr18:2,688,712
INFO 2026-06-08 09:45:37 MarkDuplicates Tracking 319650 as yet unmatched pairs. 15875 records in RAM.
INFO 2026-06-08 09:45:39 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 2s. Last read position: chr18:12,535,488
INFO 2026-06-08 09:45:39 MarkDuplicates Tracking 317466 as yet unmatched pairs. 13691 records in RAM.
INFO 2026-06-08 09:45:41 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 2s. Last read position: chr18:26,854,243
INFO 2026-06-08 09:45:41 MarkDuplicates Tracking 316637 as yet unmatched pairs. 12862 records in RAM.
INFO 2026-06-08 09:48:01 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 139s. Last read position: chr18:34,858,354
INFO 2026-06-08 09:48:01 MarkDuplicates Tracking 314016 as yet unmatched pairs. 10241 records in RAM.
INFO 2026-06-08 09:48:03 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 2s. Last read position: chr18:49,490,476
INFO 2026-06-08 09:48:03 MarkDuplicates Tracking 311571 as yet unmatched pairs. 7796 records in RAM.
INFO 2026-06-08 09:48:05 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr18:58,981,520
INFO 2026-06-08 09:48:05 MarkDuplicates Tracking 309452 as yet unmatched pairs. 5677 records in RAM.
INFO 2026-06-08 09:48:07 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 2s. Last read position: chr18:75,288,011
INFO 2026-06-08 09:48:07 MarkDuplicates Tracking 306795 as yet unmatched pairs. 3019 records in RAM.
INFO 2026-06-08 09:48:10 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 3s. Last read position: chr19:195,722
INFO 2026-06-08 09:48:10 MarkDuplicates Tracking 303771 as yet unmatched pairs. 153869 records in RAM.
INFO 2026-06-08 09:48:13 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr19:891,008
INFO 2026-06-08 09:48:13 MarkDuplicates Tracking 301241 as yet unmatched pairs. 151339 records in RAM.
INFO 2026-06-08 09:48:15 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr19:1,254,229
INFO 2026-06-08 09:48:15 MarkDuplicates Tracking 299554 as yet unmatched pairs. 149652 records in RAM.
INFO 2026-06-08 09:48:17 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 2s. Last read position: chr19:1,456,974
INFO 2026-06-08 09:48:17 MarkDuplicates Tracking 295491 as yet unmatched pairs. 145588 records in RAM.
INFO 2026-06-08 09:48:19 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 2s. Last read position: chr19:1,469,439
INFO 2026-06-08 09:48:19 MarkDuplicates Tracking 291991 as yet unmatched pairs. 142088 records in RAM.
INFO 2026-06-08 09:48:21 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:1,979,634
INFO 2026-06-08 09:48:21 MarkDuplicates Tracking 288915 as yet unmatched pairs. 139011 records in RAM.
INFO 2026-06-08 09:48:23 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 2s. Last read position: chr19:2,248,190
INFO 2026-06-08 09:48:23 MarkDuplicates Tracking 286505 as yet unmatched pairs. 136601 records in RAM.
INFO 2026-06-08 09:48:25 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr19:2,757,735
INFO 2026-06-08 09:48:25 MarkDuplicates Tracking 284201 as yet unmatched pairs. 134297 records in RAM.
INFO 2026-06-08 09:48:28 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr19:3,633,151
INFO 2026-06-08 09:48:28 MarkDuplicates Tracking 281128 as yet unmatched pairs. 131223 records in RAM.
INFO 2026-06-08 09:48:29 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:4,690,947
INFO 2026-06-08 09:48:29 MarkDuplicates Tracking 278593 as yet unmatched pairs. 128688 records in RAM.
INFO 2026-06-08 09:48:32 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr19:5,223,002
INFO 2026-06-08 09:48:32 MarkDuplicates Tracking 276995 as yet unmatched pairs. 127090 records in RAM.
INFO 2026-06-08 09:48:34 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr19:5,694,423
INFO 2026-06-08 09:48:34 MarkDuplicates Tracking 273172 as yet unmatched pairs. 123267 records in RAM.
INFO 2026-06-08 09:48:36 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr19:6,694,463
INFO 2026-06-08 09:48:36 MarkDuplicates Tracking 270207 as yet unmatched pairs. 120302 records in RAM.
INFO 2026-06-08 09:48:38 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 2s. Last read position: chr19:7,912,276
INFO 2026-06-08 09:48:38 MarkDuplicates Tracking 267803 as yet unmatched pairs. 117898 records in RAM.
INFO 2026-06-08 09:48:40 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr19:9,856,844
INFO 2026-06-08 09:48:40 MarkDuplicates Tracking 265590 as yet unmatched pairs. 115685 records in RAM.
INFO 2026-06-08 09:48:42 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 2s. Last read position: chr19:10,364,863
INFO 2026-06-08 09:48:42 MarkDuplicates Tracking 262699 as yet unmatched pairs. 112794 records in RAM.
INFO 2026-06-08 09:48:44 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:10,986,223
INFO 2026-06-08 09:48:44 MarkDuplicates Tracking 260507 as yet unmatched pairs. 110602 records in RAM.
INFO 2026-06-08 09:48:46 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 2s. Last read position: chr19:11,449,348
INFO 2026-06-08 09:48:46 MarkDuplicates Tracking 257700 as yet unmatched pairs. 107794 records in RAM.
INFO 2026-06-08 09:48:49 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 2s. Last read position: chr19:12,893,609
INFO 2026-06-08 09:48:49 MarkDuplicates Tracking 255211 as yet unmatched pairs. 105305 records in RAM.
INFO 2026-06-08 09:48:51 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr19:13,814,698
INFO 2026-06-08 09:48:51 MarkDuplicates Tracking 252501 as yet unmatched pairs. 102595 records in RAM.
INFO 2026-06-08 09:48:53 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 2s. Last read position: chr19:14,451,049
INFO 2026-06-08 09:48:53 MarkDuplicates Tracking 250030 as yet unmatched pairs. 100124 records in RAM.
INFO 2026-06-08 09:48:55 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr19:15,189,311
INFO 2026-06-08 09:48:55 MarkDuplicates Tracking 247168 as yet unmatched pairs. 97262 records in RAM.
INFO 2026-06-08 09:48:57 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 2s. Last read position: chr19:15,257,066
INFO 2026-06-08 09:48:57 MarkDuplicates Tracking 245239 as yet unmatched pairs. 95332 records in RAM.
INFO 2026-06-08 09:48:59 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr19:16,208,016
INFO 2026-06-08 09:48:59 MarkDuplicates Tracking 242025 as yet unmatched pairs. 92118 records in RAM.
INFO 2026-06-08 09:49:01 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chr19:17,211,942
INFO 2026-06-08 09:49:01 MarkDuplicates Tracking 239637 as yet unmatched pairs. 89730 records in RAM.
INFO 2026-06-08 09:49:03 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 2s. Last read position: chr19:17,862,999
INFO 2026-06-08 09:49:03 MarkDuplicates Tracking 237588 as yet unmatched pairs. 87679 records in RAM.
INFO 2026-06-08 09:49:05 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr19:18,573,718
INFO 2026-06-08 09:49:05 MarkDuplicates Tracking 235203 as yet unmatched pairs. 85294 records in RAM.
INFO 2026-06-08 09:49:07 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 2s. Last read position: chr19:18,870,538
INFO 2026-06-08 09:49:07 MarkDuplicates Tracking 231852 as yet unmatched pairs. 81943 records in RAM.
INFO 2026-06-08 09:49:09 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr19:19,227,553
INFO 2026-06-08 09:49:09 MarkDuplicates Tracking 229674 as yet unmatched pairs. 79756 records in RAM.
INFO 2026-06-08 09:49:11 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 2s. Last read position: chr19:23,827,183
INFO 2026-06-08 09:49:11 MarkDuplicates Tracking 226653 as yet unmatched pairs. 76735 records in RAM.
INFO 2026-06-08 09:49:13 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr19:34,409,254
INFO 2026-06-08 09:49:13 MarkDuplicates Tracking 224352 as yet unmatched pairs. 74433 records in RAM.
INFO 2026-06-08 09:49:15 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 2s. Last read position: chr19:35,619,028
INFO 2026-06-08 09:49:15 MarkDuplicates Tracking 219750 as yet unmatched pairs. 69829 records in RAM.
INFO 2026-06-08 09:49:18 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 2s. Last read position: chr19:35,872,579
INFO 2026-06-08 09:49:18 MarkDuplicates Tracking 217528 as yet unmatched pairs. 67607 records in RAM.
INFO 2026-06-08 09:49:19 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr19:38,141,352
INFO 2026-06-08 09:49:19 MarkDuplicates Tracking 215294 as yet unmatched pairs. 65372 records in RAM.
INFO 2026-06-08 09:49:22 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 2s. Last read position: chr19:38,905,274
INFO 2026-06-08 09:49:22 MarkDuplicates Tracking 213140 as yet unmatched pairs. 63217 records in RAM.
INFO 2026-06-08 09:49:24 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr19:39,424,597
INFO 2026-06-08 09:49:24 MarkDuplicates Tracking 210866 as yet unmatched pairs. 60943 records in RAM.
INFO 2026-06-08 09:49:26 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 2s. Last read position: chr19:39,893,989
INFO 2026-06-08 09:49:26 MarkDuplicates Tracking 208802 as yet unmatched pairs. 58879 records in RAM.
INFO 2026-06-08 09:49:28 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr19:40,365,895
INFO 2026-06-08 09:49:28 MarkDuplicates Tracking 206476 as yet unmatched pairs. 56553 records in RAM.
INFO 2026-06-08 09:49:30 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 2s. Last read position: chr19:41,304,101
INFO 2026-06-08 09:49:30 MarkDuplicates Tracking 204245 as yet unmatched pairs. 54319 records in RAM.
INFO 2026-06-08 09:49:32 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 2s. Last read position: chr19:42,230,819
INFO 2026-06-08 09:49:32 MarkDuplicates Tracking 201316 as yet unmatched pairs. 51390 records in RAM.
INFO 2026-06-08 09:49:34 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr19:42,287,086
INFO 2026-06-08 09:49:34 MarkDuplicates Tracking 199965 as yet unmatched pairs. 50039 records in RAM.
INFO 2026-06-08 09:49:36 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 2s. Last read position: chr19:42,293,918
INFO 2026-06-08 09:49:36 MarkDuplicates Tracking 197522 as yet unmatched pairs. 47596 records in RAM.
INFO 2026-06-08 09:49:38 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr19:42,376,361
INFO 2026-06-08 09:49:38 MarkDuplicates Tracking 195071 as yet unmatched pairs. 45138 records in RAM.
INFO 2026-06-08 09:49:40 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 2s. Last read position: chr19:44,888,256
INFO 2026-06-08 09:49:40 MarkDuplicates Tracking 191350 as yet unmatched pairs. 41417 records in RAM.
INFO 2026-06-08 09:49:42 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr19:45,409,312
INFO 2026-06-08 09:49:42 MarkDuplicates Tracking 188673 as yet unmatched pairs. 38740 records in RAM.
INFO 2026-06-08 09:49:44 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 2s. Last read position: chr19:45,792,579
INFO 2026-06-08 09:49:44 MarkDuplicates Tracking 186418 as yet unmatched pairs. 36485 records in RAM.
INFO 2026-06-08 09:49:46 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr19:46,919,110
INFO 2026-06-08 09:49:46 MarkDuplicates Tracking 183157 as yet unmatched pairs. 33224 records in RAM.
INFO 2026-06-08 09:49:48 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 2s. Last read position: chr19:47,741,437
INFO 2026-06-08 09:49:48 MarkDuplicates Tracking 180176 as yet unmatched pairs. 30243 records in RAM.
INFO 2026-06-08 09:49:50 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 2s. Last read position: chr19:48,629,522
INFO 2026-06-08 09:49:50 MarkDuplicates Tracking 177924 as yet unmatched pairs. 27991 records in RAM.
INFO 2026-06-08 09:49:52 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr19:49,108,323
INFO 2026-06-08 09:49:52 MarkDuplicates Tracking 177077 as yet unmatched pairs. 27144 records in RAM.
INFO 2026-06-08 09:49:54 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 2s. Last read position: chr19:49,597,804
INFO 2026-06-08 09:49:54 MarkDuplicates Tracking 172785 as yet unmatched pairs. 22852 records in RAM.
INFO 2026-06-08 09:49:56 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr19:49,818,401
INFO 2026-06-08 09:49:56 MarkDuplicates Tracking 169891 as yet unmatched pairs. 19958 records in RAM.
INFO 2026-06-08 09:49:58 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 2s. Last read position: chr19:50,482,601
INFO 2026-06-08 09:49:58 MarkDuplicates Tracking 167575 as yet unmatched pairs. 17642 records in RAM.
INFO 2026-06-08 09:50:00 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr19:53,483,827
INFO 2026-06-08 09:50:00 MarkDuplicates Tracking 164657 as yet unmatched pairs. 14724 records in RAM.
INFO 2026-06-08 09:50:02 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 2s. Last read position: chr19:54,435,577
INFO 2026-06-08 09:50:02 MarkDuplicates Tracking 164174 as yet unmatched pairs. 14241 records in RAM.
INFO 2026-06-08 09:50:04 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 2s. Last read position: chr19:54,461,555
INFO 2026-06-08 09:50:04 MarkDuplicates Tracking 160530 as yet unmatched pairs. 10597 records in RAM.
INFO 2026-06-08 09:50:06 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr19:55,578,854
INFO 2026-06-08 09:50:06 MarkDuplicates Tracking 157008 as yet unmatched pairs. 7075 records in RAM.
INFO 2026-06-08 09:50:08 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 2s. Last read position: chr19:57,291,595
INFO 2026-06-08 09:50:08 MarkDuplicates Tracking 154252 as yet unmatched pairs. 4319 records in RAM.
INFO 2026-06-08 09:50:10 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chr19:58,067,169
INFO 2026-06-08 09:50:10 MarkDuplicates Tracking 152106 as yet unmatched pairs. 2173 records in RAM.
INFO 2026-06-08 09:50:13 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 2s. Last read position: chr20:409,883
INFO 2026-06-08 09:50:13 MarkDuplicates Tracking 149773 as yet unmatched pairs. 46667 records in RAM.
INFO 2026-06-08 09:50:15 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chr20:2,860,479
INFO 2026-06-08 09:50:15 MarkDuplicates Tracking 147079 as yet unmatched pairs. 43973 records in RAM.
INFO 2026-06-08 09:50:17 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chr20:4,024,045
INFO 2026-06-08 09:50:17 MarkDuplicates Tracking 144238 as yet unmatched pairs. 41132 records in RAM.
INFO 2026-06-08 09:50:19 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 2s. Last read position: chr20:17,627,545
INFO 2026-06-08 09:50:19 MarkDuplicates Tracking 141968 as yet unmatched pairs. 38862 records in RAM.
INFO 2026-06-08 09:50:21 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chr20:23,633,883
INFO 2026-06-08 09:50:21 MarkDuplicates Tracking 146187 as yet unmatched pairs. 43081 records in RAM.
INFO 2026-06-08 09:50:23 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 2s. Last read position: chr20:31,861,457
INFO 2026-06-08 09:50:23 MarkDuplicates Tracking 137371 as yet unmatched pairs. 34265 records in RAM.
INFO 2026-06-08 09:50:25 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chr20:34,741,164
INFO 2026-06-08 09:50:25 MarkDuplicates Tracking 135267 as yet unmatched pairs. 32161 records in RAM.
INFO 2026-06-08 09:50:27 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 2s. Last read position: chr20:35,716,761
INFO 2026-06-08 09:50:27 MarkDuplicates Tracking 132814 as yet unmatched pairs. 29707 records in RAM.
INFO 2026-06-08 09:50:29 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chr20:38,012,065
INFO 2026-06-08 09:50:29 MarkDuplicates Tracking 130480 as yet unmatched pairs. 27373 records in RAM.
INFO 2026-06-08 09:50:31 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 2s. Last read position: chr20:41,420,553
INFO 2026-06-08 09:50:31 MarkDuplicates Tracking 128099 as yet unmatched pairs. 24991 records in RAM.
INFO 2026-06-08 09:50:33 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 2s. Last read position: chr20:45,424,529
INFO 2026-06-08 09:50:33 MarkDuplicates Tracking 126078 as yet unmatched pairs. 22970 records in RAM.
INFO 2026-06-08 09:50:35 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chr20:47,676,606
INFO 2026-06-08 09:50:35 MarkDuplicates Tracking 123795 as yet unmatched pairs. 20687 records in RAM.
INFO 2026-06-08 09:50:37 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 2s. Last read position: chr20:50,582,769
INFO 2026-06-08 09:50:37 MarkDuplicates Tracking 121194 as yet unmatched pairs. 18085 records in RAM.
INFO 2026-06-08 09:50:39 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chr20:58,693,039
INFO 2026-06-08 09:50:39 MarkDuplicates Tracking 118692 as yet unmatched pairs. 15580 records in RAM.
INFO 2026-06-08 09:50:41 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 2s. Last read position: chr20:58,903,552
INFO 2026-06-08 09:50:41 MarkDuplicates Tracking 116569 as yet unmatched pairs. 13457 records in RAM.
INFO 2026-06-08 09:50:43 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 1s. Last read position: chr20:62,289,235
INFO 2026-06-08 09:50:43 MarkDuplicates Tracking 112915 as yet unmatched pairs. 9802 records in RAM.
INFO 2026-06-08 09:50:45 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 2s. Last read position: chr20:62,825,824
INFO 2026-06-08 09:50:45 MarkDuplicates Tracking 111394 as yet unmatched pairs. 8281 records in RAM.
INFO 2026-06-08 09:50:47 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 2s. Last read position: chr20:63,428,347
INFO 2026-06-08 09:50:47 MarkDuplicates Tracking 107390 as yet unmatched pairs. 4277 records in RAM.
INFO 2026-06-08 09:50:49 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 1s. Last read position: chr20:63,862,751
INFO 2026-06-08 09:50:49 MarkDuplicates Tracking 104489 as yet unmatched pairs. 1375 records in RAM.
INFO 2026-06-08 09:50:51 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 2s. Last read position: chr21:8,214,695
INFO 2026-06-08 09:50:51 MarkDuplicates Tracking 102454 as yet unmatched pairs. 18172 records in RAM.
INFO 2026-06-08 09:50:53 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,896
INFO 2026-06-08 09:50:53 MarkDuplicates Tracking 100872 as yet unmatched pairs. 16583 records in RAM.
INFO 2026-06-08 09:50:54 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,770
INFO 2026-06-08 09:50:54 MarkDuplicates Tracking 100596 as yet unmatched pairs. 16303 records in RAM.
INFO 2026-06-08 09:50:56 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,960
INFO 2026-06-08 09:50:56 MarkDuplicates Tracking 99217 as yet unmatched pairs. 14917 records in RAM.
INFO 2026-06-08 09:50:57 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,594
INFO 2026-06-08 09:50:57 MarkDuplicates Tracking 97390 as yet unmatched pairs. 13088 records in RAM.
INFO 2026-06-08 09:50:59 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 1s. Last read position: chr21:32,412,914
INFO 2026-06-08 09:50:59 MarkDuplicates Tracking 95396 as yet unmatched pairs. 11094 records in RAM.
INFO 2026-06-08 09:51:01 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 2s. Last read position: chr21:34,792,095
INFO 2026-06-08 09:51:01 MarkDuplicates Tracking 92666 as yet unmatched pairs. 8364 records in RAM.
INFO 2026-06-08 09:51:03 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 1s. Last read position: chr21:43,100,476
INFO 2026-06-08 09:51:03 MarkDuplicates Tracking 90233 as yet unmatched pairs. 5931 records in RAM.
INFO 2026-06-08 09:51:05 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 2s. Last read position: chr21:45,512,250
INFO 2026-06-08 09:51:05 MarkDuplicates Tracking 88010 as yet unmatched pairs. 3707 records in RAM.
INFO 2026-06-08 09:51:07 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 1s. Last read position: chr21:46,265,399
INFO 2026-06-08 09:51:07 MarkDuplicates Tracking 85679 as yet unmatched pairs. 1376 records in RAM.
INFO 2026-06-08 09:51:09 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 2s. Last read position: chr22:19,064,911
INFO 2026-06-08 09:51:09 MarkDuplicates Tracking 82972 as yet unmatched pairs. 32968 records in RAM.
INFO 2026-06-08 09:51:11 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 1s. Last read position: chr22:20,668,091
INFO 2026-06-08 09:51:11 MarkDuplicates Tracking 80324 as yet unmatched pairs. 30320 records in RAM.
INFO 2026-06-08 09:51:13 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 2s. Last read position: chr22:23,288,144
INFO 2026-06-08 09:51:13 MarkDuplicates Tracking 78135 as yet unmatched pairs. 28131 records in RAM.
INFO 2026-06-08 09:51:15 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 2s. Last read position: chr22:26,292,466
INFO 2026-06-08 09:51:15 MarkDuplicates Tracking 75383 as yet unmatched pairs. 25379 records in RAM.
INFO 2026-06-08 09:51:17 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:22:55s. Time for last 1,000,000: 1s. Last read position: chr22:29,287,047
INFO 2026-06-08 09:51:17 MarkDuplicates Tracking 73227 as yet unmatched pairs. 23223 records in RAM.
INFO 2026-06-08 09:51:19 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:22:57s. Time for last 1,000,000: 2s. Last read position: chr22:30,339,160
INFO 2026-06-08 09:51:19 MarkDuplicates Tracking 70202 as yet unmatched pairs. 20198 records in RAM.
INFO 2026-06-08 09:51:21 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 1s. Last read position: chr22:35,897,368
INFO 2026-06-08 09:51:21 MarkDuplicates Tracking 67613 as yet unmatched pairs. 17609 records in RAM.
INFO 2026-06-08 09:51:23 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 2s. Last read position: chr22:37,765,598
INFO 2026-06-08 09:51:23 MarkDuplicates Tracking 65055 as yet unmatched pairs. 15051 records in RAM.
INFO 2026-06-08 09:51:25 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:23:03s. Time for last 1,000,000: 1s. Last read position: chr22:38,866,435
INFO 2026-06-08 09:51:25 MarkDuplicates Tracking 63448 as yet unmatched pairs. 13444 records in RAM.
INFO 2026-06-08 09:51:27 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:23:05s. Time for last 1,000,000: 2s. Last read position: chr22:41,164,075
INFO 2026-06-08 09:51:27 MarkDuplicates Tracking 60379 as yet unmatched pairs. 10375 records in RAM.
INFO 2026-06-08 09:51:29 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:23:07s. Time for last 1,000,000: 2s. Last read position: chr22:42,210,481
INFO 2026-06-08 09:51:29 MarkDuplicates Tracking 58103 as yet unmatched pairs. 8098 records in RAM.
INFO 2026-06-08 09:51:31 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:23:09s. Time for last 1,000,000: 1s. Last read position: chr22:49,886,918
INFO 2026-06-08 09:51:31 MarkDuplicates Tracking 55614 as yet unmatched pairs. 5609 records in RAM.
INFO 2026-06-08 09:51:33 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:23:11s. Time for last 1,000,000: 2s. Last read position: chr22:50,286,237
INFO 2026-06-08 09:51:33 MarkDuplicates Tracking 53502 as yet unmatched pairs. 3497 records in RAM.
INFO 2026-06-08 09:51:35 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:23:13s. Time for last 1,000,000: 1s. Last read position: chr22:50,768,753
INFO 2026-06-08 09:51:35 MarkDuplicates Tracking 50119 as yet unmatched pairs. 114 records in RAM.
INFO 2026-06-08 09:51:38 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:23:15s. Time for last 1,000,000: 2s. Last read position: chrX:12,976,267
INFO 2026-06-08 09:51:38 MarkDuplicates Tracking 49941 as yet unmatched pairs. 33356 records in RAM.
INFO 2026-06-08 09:51:39 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 1s. Last read position: chrX:32,463,564
INFO 2026-06-08 09:51:39 MarkDuplicates Tracking 45509 as yet unmatched pairs. 28910 records in RAM.
INFO 2026-06-08 09:51:42 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 2s. Last read position: chrX:47,169,381
INFO 2026-06-08 09:51:42 MarkDuplicates Tracking 43422 as yet unmatched pairs. 26823 records in RAM.
INFO 2026-06-08 09:51:43 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:23:21s. Time for last 1,000,000: 1s. Last read position: chrX:48,893,717
INFO 2026-06-08 09:51:43 MarkDuplicates Tracking 40917 as yet unmatched pairs. 24318 records in RAM.
INFO 2026-06-08 09:51:46 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 2s. Last read position: chrX:51,901,840
INFO 2026-06-08 09:51:46 MarkDuplicates Tracking 39189 as yet unmatched pairs. 22590 records in RAM.
INFO 2026-06-08 09:51:47 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:23:25s. Time for last 1,000,000: 1s. Last read position: chrX:53,413,013
INFO 2026-06-08 09:51:47 MarkDuplicates Tracking 36981 as yet unmatched pairs. 20382 records in RAM.
INFO 2026-06-08 09:51:49 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:23:27s. Time for last 1,000,000: 1s. Last read position: chrX:63,350,520
INFO 2026-06-08 09:51:49 MarkDuplicates Tracking 34595 as yet unmatched pairs. 17996 records in RAM.
INFO 2026-06-08 09:51:51 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 2s. Last read position: chrX:71,253,135
INFO 2026-06-08 09:51:51 MarkDuplicates Tracking 32455 as yet unmatched pairs. 15855 records in RAM.
INFO 2026-06-08 09:51:53 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:23:31s. Time for last 1,000,000: 1s. Last read position: chrX:77,683,587
INFO 2026-06-08 09:51:53 MarkDuplicates Tracking 30539 as yet unmatched pairs. 13938 records in RAM.
INFO 2026-06-08 09:51:55 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:23:33s. Time for last 1,000,000: 2s. Last read position: chrX:103,586,885
INFO 2026-06-08 09:51:55 MarkDuplicates Tracking 28388 as yet unmatched pairs. 11787 records in RAM.
INFO 2026-06-08 09:51:57 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:23:35s. Time for last 1,000,000: 1s. Last read position: chrX:124,383,957
INFO 2026-06-08 09:51:57 MarkDuplicates Tracking 26425 as yet unmatched pairs. 9824 records in RAM.
INFO 2026-06-08 09:51:59 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:23:37s. Time for last 1,000,000: 2s. Last read position: chrX:147,944,963
INFO 2026-06-08 09:51:59 MarkDuplicates Tracking 24275 as yet unmatched pairs. 7672 records in RAM.
INFO 2026-06-08 09:52:01 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:23:39s. Time for last 1,000,000: 2s. Last read position: chrX:153,796,483
INFO 2026-06-08 09:52:01 MarkDuplicates Tracking 22030 as yet unmatched pairs. 5423 records in RAM.
INFO 2026-06-08 09:52:03 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:23:41s. Time for last 1,000,000: 1s. Last read position: chrX:154,358,525
INFO 2026-06-08 09:52:03 MarkDuplicates Tracking 20009 as yet unmatched pairs. 3402 records in RAM.
INFO 2026-06-08 09:52:05 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:23:43s. Time for last 1,000,000: 2s. Last read position: chrX:154,768,311
INFO 2026-06-08 09:52:05 MarkDuplicates Tracking 16864 as yet unmatched pairs. 256 records in RAM.
INFO 2026-06-08 09:52:07 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:23:45s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,176
INFO 2026-06-08 09:52:07 MarkDuplicates Tracking 15919 as yet unmatched pairs. 4739 records in RAM.
INFO 2026-06-08 09:52:09 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:23:46s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,112
INFO 2026-06-08 09:52:09 MarkDuplicates Tracking 11401 as yet unmatched pairs. 221 records in RAM.
INFO 2026-06-08 09:52:10 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:23:48s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,703
INFO 2026-06-08 09:52:10 MarkDuplicates Tracking 11183 as yet unmatched pairs. 3 records in RAM.
INFO 2026-06-08 09:52:11 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:23:49s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,068
INFO 2026-06-08 09:52:11 MarkDuplicates Tracking 4206 as yet unmatched pairs. 4165 records in RAM.
INFO 2026-06-08 09:52:13 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:23:51s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,098
INFO 2026-06-08 09:52:13 MarkDuplicates Tracking 196 as yet unmatched pairs. 155 records in RAM.
INFO 2026-06-08 09:52:14 MarkDuplicates Read 628998342 records. 0 pairs never matched.
INFO 2026-06-08 09:52:55 MarkDuplicates After buildSortedReadEndLists freeMemory: 57016201456; totalMemory: 81436606464; maxMemory: 127137742848
INFO 2026-06-08 09:52:55 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk.
INFO 2026-06-08 09:52:57 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-08 09:53:35 OpticalDuplicateFinder Large duplicate set. size = 1377
INFO 2026-06-08 09:53:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,506
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,403
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder Large duplicate set. size = 1646
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,673
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,169
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder Large duplicate set. size = 1143
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,328
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder Large duplicate set. size = 1308
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,212
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder Large duplicate set. size = 1261
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,037
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,532
INFO 2026-06-08 09:53:38 OpticalDuplicateFinder Large duplicate set. size = 1490
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,519
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,754
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder Large duplicate set. size = 1623
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,213
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,356
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,941
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder Large duplicate set. size = 1643
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,700
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder Large duplicate set. size = 1089
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,254
INFO 2026-06-08 09:53:40 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,119
INFO 2026-06-08 09:53:40 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 09:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,763
INFO 2026-06-08 09:53:40 OpticalDuplicateFinder Large duplicate set. size = 1074
INFO 2026-06-08 09:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,906
INFO 2026-06-08 09:53:40 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 09:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,418
INFO 2026-06-08 09:53:40 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 09:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,894
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1207
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,033
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 2240
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,198
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,773
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,915
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 2173
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,492
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,718
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,812
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1439
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,207
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1462
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,541
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,929
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1528
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,913
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1340
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,074
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,477
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,506
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1328
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,607
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1426
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,054
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder Large duplicate set. size = 1205
INFO 2026-06-08 09:53:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,916
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1186
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,314
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1079
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,300
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1339
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,840
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1758
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,809
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1319
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,782
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1247
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,993
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,239
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1276
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,155
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1304
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,554
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1414
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,061
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1192
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,516
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1423
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,804
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1634
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,466
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1650
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,515
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1083
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,908
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,045
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,584
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1174
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,511
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1086
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,581
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1782
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,796
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1913
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,237
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1878
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,189
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 2703
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,236
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,874
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1074
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,102
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1071
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,946
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1629
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,542
INFO 2026-06-08 09:53:42 OpticalDuplicateFinder Large duplicate set. size = 1119
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,472
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 2083
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,334
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,066
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1143
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,642
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1501
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,469
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,583
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,222
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1290
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,030
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,943
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1976
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,735
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,867
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1352
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,955
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1354
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,038
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,199
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,022
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1129
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,107
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,745
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1463
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,146
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1179
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,040
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1591
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,154
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 2337
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,085
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,645
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,209
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,418
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,909
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,215
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,491
INFO 2026-06-08 09:53:44 OpticalDuplicateFinder Large duplicate set. size = 1277
INFO 2026-06-08 09:53:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,734
INFO 2026-06-08 09:53:45 OpticalDuplicateFinder Large duplicate set. size = 1827
INFO 2026-06-08 09:53:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,558
INFO 2026-06-08 09:53:45 OpticalDuplicateFinder Large duplicate set. size = 2392
INFO 2026-06-08 09:53:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,139
INFO 2026-06-08 09:53:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,018
INFO 2026-06-08 09:53:46 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 09:53:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,228
INFO 2026-06-08 09:53:46 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-08 09:53:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,706
INFO 2026-06-08 09:53:46 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 09:53:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,801
INFO 2026-06-08 09:53:46 OpticalDuplicateFinder Large duplicate set. size = 1120
INFO 2026-06-08 09:53:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,799
INFO 2026-06-08 09:53:46 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:53:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,799
INFO 2026-06-08 09:53:46 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 09:53:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,116
INFO 2026-06-08 09:53:47 OpticalDuplicateFinder Large duplicate set. size = 1242
INFO 2026-06-08 09:53:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,017
INFO 2026-06-08 09:53:47 OpticalDuplicateFinder Large duplicate set. size = 1181
INFO 2026-06-08 09:53:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,548
INFO 2026-06-08 09:53:47 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 09:53:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,952
INFO 2026-06-08 09:54:40 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:54:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,572
INFO 2026-06-08 09:54:40 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:54:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,536
INFO 2026-06-08 09:54:40 OpticalDuplicateFinder Large duplicate set. size = 1301
INFO 2026-06-08 09:54:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,606
INFO 2026-06-08 09:54:40 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:54:40 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:55:56 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:56:07 MarkDuplicates After generateDuplicateIndexes freeMemory: 203895008; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 09:56:07 MarkDuplicates Marking 439768560 records as duplicates.
INFO 2026-06-08 09:56:07 MarkDuplicates Found 11452912 optical duplicate clusters.
INFO 2026-06-08 09:56:07 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:56:24 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:28,473,758
INFO 2026-06-08 09:56:42 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:35s. Time for last 10,000,000: 17s. Last read position: chr1:61,314,591
INFO 2026-06-08 09:56:59 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:52s. Time for last 10,000,000: 17s. Last read position: chr1:146,966,465
INFO 2026-06-08 09:57:17 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:09s. Time for last 10,000,000: 17s. Last read position: chr1:156,670,333
INFO 2026-06-08 09:57:34 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:27s. Time for last 10,000,000: 17s. Last read position: chr1:206,453,240
INFO 2026-06-08 09:57:51 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:44s. Time for last 10,000,000: 17s. Last read position: chr2:27,224,464
INFO 2026-06-08 09:58:09 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:02s. Time for last 10,000,000: 17s. Last read position: chr2:63,404,228
INFO 2026-06-08 09:58:26 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:19s. Time for last 10,000,000: 17s. Last read position: chr2:152,560,968
INFO 2026-06-08 09:58:43 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:36s. Time for last 10,000,000: 17s. Last read position: chr2:217,848,136
INFO 2026-06-08 09:59:00 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:53s. Time for last 10,000,000: 17s. Last read position: chr3:39,411,953
INFO 2026-06-08 09:59:18 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:11s. Time for last 10,000,000: 17s. Last read position: chr3:101,579,902
INFO 2026-06-08 09:59:35 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:28s. Time for last 10,000,000: 17s. Last read position: chr3:187,072,772
INFO 2026-06-08 09:59:52 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:45s. Time for last 10,000,000: 17s. Last read position: chr4:76,770,697
INFO 2026-06-08 10:00:10 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:03s. Time for last 10,000,000: 17s. Last read position: chr5:14,487,559
INFO 2026-06-08 10:00:27 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:20s. Time for last 10,000,000: 17s. Last read position: chr5:131,671,869
INFO 2026-06-08 10:00:44 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 16s. Last read position: chr5:150,256,568
INFO 2026-06-08 10:01:01 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 17s. Last read position: chr6:26,104,128
INFO 2026-06-08 10:01:18 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:11s. Time for last 10,000,000: 17s. Last read position: chr6:39,925,765
INFO 2026-06-08 10:01:36 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:29s. Time for last 10,000,000: 17s. Last read position: chr6:151,350,248
INFO 2026-06-08 10:01:53 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:46s. Time for last 10,000,000: 17s. Last read position: chr7:11,036,451
INFO 2026-06-08 10:02:10 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:03s. Time for last 10,000,000: 17s. Last read position: chr7:44,065,283
INFO 2026-06-08 10:02:27 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:20s. Time for last 10,000,000: 17s. Last read position: chr7:44,117,688
INFO 2026-06-08 10:02:44 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:37s. Time for last 10,000,000: 17s. Last read position: chr7:55,173,948
INFO 2026-06-08 10:03:01 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:54s. Time for last 10,000,000: 17s. Last read position: chr7:73,082,939
INFO 2026-06-08 10:03:19 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:12s. Time for last 10,000,000: 17s. Last read position: chr7:100,467,573
INFO 2026-06-08 10:03:36 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:29s. Time for last 10,000,000: 17s. Last read position: chr7:122,011,274
INFO 2026-06-08 10:03:53 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:46s. Time for last 10,000,000: 17s. Last read position: chr7:140,702,793
INFO 2026-06-08 10:04:10 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:03s. Time for last 10,000,000: 17s. Last read position: chr8:38,314,685
INFO 2026-06-08 10:04:28 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:21s. Time for last 10,000,000: 17s. Last read position: chr8:143,985,048
INFO 2026-06-08 10:04:45 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:38s. Time for last 10,000,000: 17s. Last read position: chr9:115,090,587
INFO 2026-06-08 10:05:02 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:55s. Time for last 10,000,000: 17s. Last read position: chr9:137,040,854
INFO 2026-06-08 10:05:20 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:13s. Time for last 10,000,000: 17s. Last read position: chr10:107,164,129
INFO 2026-06-08 10:05:37 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:30s. Time for last 10,000,000: 17s. Last read position: chr11:46,367,337
INFO 2026-06-08 10:05:54 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:47s. Time for last 10,000,000: 17s. Last read position: chr11:67,428,605
INFO 2026-06-08 10:06:12 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:05s. Time for last 10,000,000: 17s. Last read position: chr11:123,726,294
INFO 2026-06-08 10:06:29 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:22s. Time for last 10,000,000: 17s. Last read position: chr12:49,052,215
INFO 2026-06-08 10:06:46 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:39s. Time for last 10,000,000: 17s. Last read position: chr12:57,526,506
INFO 2026-06-08 10:07:04 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:56s. Time for last 10,000,000: 17s. Last read position: chr12:131,961,644
INFO 2026-06-08 10:07:21 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:14s. Time for last 10,000,000: 17s. Last read position: chr14:21,074,349
INFO 2026-06-08 10:07:38 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:31s. Time for last 10,000,000: 17s. Last read position: chr14:75,281,221
INFO 2026-06-08 10:07:56 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:49s. Time for last 10,000,000: 17s. Last read position: chr15:43,361,319
INFO 2026-06-08 10:08:13 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:06s. Time for last 10,000,000: 17s. Last read position: chr15:88,655,435
INFO 2026-06-08 10:08:30 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:23s. Time for last 10,000,000: 17s. Last read position: chr16:8,768,203
INFO 2026-06-08 10:08:47 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:40s. Time for last 10,000,000: 17s. Last read position: chr16:22,534,960
INFO 2026-06-08 10:09:04 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:57s. Time for last 10,000,000: 16s. Last read position: chr16:56,514,647
INFO 2026-06-08 10:09:21 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 17s. Last read position: chr17:1,072,647
INFO 2026-06-08 10:09:39 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:31s. Time for last 10,000,000: 17s. Last read position: chr17:20,232,357
INFO 2026-06-08 10:09:56 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:49s. Time for last 10,000,000: 17s. Last read position: chr17:44,908,063
INFO 2026-06-08 10:10:13 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:06s. Time for last 10,000,000: 17s. Last read position: chr17:62,682,239
INFO 2026-06-08 10:10:31 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:23s. Time for last 10,000,000: 17s. Last read position: chr18:2,688,712
INFO 2026-06-08 10:10:48 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:41s. Time for last 10,000,000: 17s. Last read position: chr19:1,456,974
INFO 2026-06-08 10:11:05 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:58s. Time for last 10,000,000: 16s. Last read position: chr19:7,912,276
INFO 2026-06-08 10:11:22 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:15s. Time for last 10,000,000: 17s. Last read position: chr19:16,208,016
INFO 2026-06-08 10:11:39 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:32s. Time for last 10,000,000: 17s. Last read position: chr19:38,141,352
INFO 2026-06-08 10:11:56 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:49s. Time for last 10,000,000: 16s. Last read position: chr19:44,888,256
INFO 2026-06-08 10:12:13 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:06s. Time for last 10,000,000: 16s. Last read position: chr19:53,483,827
INFO 2026-06-08 10:12:30 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:23s. Time for last 10,000,000: 17s. Last read position: chr20:23,633,883
INFO 2026-06-08 10:12:47 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:40s. Time for last 10,000,000: 17s. Last read position: chr20:58,903,552
INFO 2026-06-08 10:13:03 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:56s. Time for last 10,000,000: 16s. Last read position: chr21:32,412,914
INFO 2026-06-08 10:13:20 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:13s. Time for last 10,000,000: 17s. Last read position: chr22:30,339,160
INFO 2026-06-08 10:13:37 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:30s. Time for last 10,000,000: 17s. Last read position: chrX:32,463,564
INFO 2026-06-08 10:13:54 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:47s. Time for last 10,000,000: 17s. Last read position: chrX:147,944,963
INFO 2026-06-08 10:14:11 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:04s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-08 10:14:19 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 10:14:19 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 10:14:19 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 10:14:19 MarkDuplicates Before output close freeMemory: 203861520; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 10:14:19 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 10:14:19 MarkDuplicates After output close freeMemory: 104102376; totalMemory: 134217728; maxMemory: 127137742848
[Mon Jun 08 10:14:19 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 46.00 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory