File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/de8b180d6118767aebc7b061472c28/.command.log
Size
2.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/d8b8bd349ae66a32d5a6cfdd2f88b2/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/de8b180d6118767aebc7b061472c28/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/de8b180d6118767aebc7b061472c28/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/b9123c6e3f7e6c74e86921e2122096/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_3.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
FGFR3--TACC3
starfusion
arriba
TLK2P1--AC110079.1
starfusion
IL9R--WASH4P
starfusion
PCDHA4--PCDHA13
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
TVP23C--CDRT4
arriba
MSI2--SETP3
arriba

  0%|          | 0/8 [00:00<?, ?it/s]
Processing FGFR3--TACC3:   0%|          | 0/8 [00:00<?, ?it/s]
Processing FGFR3--TACC3:  12%|█▎        | 1/8 [00:00<00:00,  8.97it/s]
Processing TLK2P1--AC110079.1:  12%|█▎        | 1/8 [00:00<00:00,  8.97it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 2/8 [00:00<00:00,  9.27it/s]
Processing IL9R--WASH4P:  25%|██▌       | 2/8 [00:00<00:00,  9.27it/s]      
Processing IL9R--WASH4P:  38%|███▊      | 3/8 [00:00<00:00,  9.37it/s]
Processing PCDHA4--PCDHA13:  38%|███▊      | 3/8 [00:00<00:00,  9.37it/s]
Processing PCDHA4--PCDHA13:  50%|█████     | 4/8 [00:00<00:00,  9.42it/s]
Processing PCDHA4--PCDHAC1:  50%|█████     | 4/8 [00:00<00:00,  9.42it/s]
Processing PCDHA4--PCDHAC1:  62%|██████▎   | 5/8 [00:00<00:00,  9.45it/s]
Processing PCDHA4--PCDHAC2:  62%|██████▎   | 5/8 [00:00<00:00,  9.45it/s]
Processing PCDHA4--PCDHAC2:  75%|███████▌  | 6/8 [00:00<00:00,  9.49it/s]
Processing TVP23C--CDRT4:  75%|███████▌  | 6/8 [00:00<00:00,  9.49it/s]  
Processing TVP23C--CDRT4:  88%|████████▊ | 7/8 [00:00<00:00,  9.52it/s]
Processing MSI2--SETP3:  88%|████████▊ | 7/8 [00:00<00:00,  9.52it/s]  
Processing MSI2--SETP3: 100%|██████████| 8/8 [00:00<00:00,  9.53it/s]
Processing MSI2--SETP3: 100%|██████████| 8/8 [00:00<00:00,  9.45it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory