Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/51a801f44b82a09301106ce3f6c001/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/672306414d777cb5a5f28979717e38/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/bf384c8d9f15f264fc08e2c0845cd7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/bf384c8d9f15f264fc08e2c0845cd7/.command.run
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (9512304) splicing reads. 220468 splicing junctions. 168072 known splicing junctions. 52396 novel splicing junctions.
sampling 10% (19024608) splicing reads. 254123 splicing junctions. 177127 known splicing junctions. 76996 novel splicing junctions.
sampling 15% (28536913) splicing reads. 273191 splicing junctions. 181372 known splicing junctions. 91819 novel splicing junctions.
sampling 20% (38049217) splicing reads. 285821 splicing junctions. 183900 known splicing junctions. 101921 novel splicing junctions.
sampling 25% (47561521) splicing reads. 294743 splicing junctions. 185556 known splicing junctions. 109187 novel splicing junctions.
sampling 30% (57073826) splicing reads. 301517 splicing junctions. 186799 known splicing junctions. 114718 novel splicing junctions.
sampling 35% (66586130) splicing reads. 306687 splicing junctions. 187616 known splicing junctions. 119071 novel splicing junctions.
sampling 40% (76098434) splicing reads. 310665 splicing junctions. 188240 known splicing junctions. 122425 novel splicing junctions.
sampling 45% (85610739) splicing reads. 313931 splicing junctions. 188728 known splicing junctions. 125203 novel splicing junctions.
sampling 50% (95123043) splicing reads. 316654 splicing junctions. 189157 known splicing junctions. 127497 novel splicing junctions.
sampling 55% (104635347) splicing reads. 318907 splicing junctions. 189515 known splicing junctions. 129392 novel splicing junctions.
sampling 60% (114147652) splicing reads. 320783 splicing junctions. 189767 known splicing junctions. 131016 novel splicing junctions.
sampling 65% (123659956) splicing reads. 322412 splicing junctions. 189995 known splicing junctions. 132417 novel splicing junctions.
sampling 70% (133172260) splicing reads. 323725 splicing junctions. 190196 known splicing junctions. 133529 novel splicing junctions.
sampling 75% (142684565) splicing reads. 324720 splicing junctions. 190329 known splicing junctions. 134391 novel splicing junctions.
sampling 80% (152196869) splicing reads. 325604 splicing junctions. 190446 known splicing junctions. 135158 novel splicing junctions.
sampling 85% (161709173) splicing reads. 326311 splicing junctions. 190557 known splicing junctions. 135754 novel splicing junctions.
sampling 90% (171221478) splicing reads. 326835 splicing junctions. 190635 known splicing junctions. 136200 novel splicing junctions.
sampling 95% (180733782) splicing reads. 327202 splicing junctions. 190686 known splicing junctions. 136516 novel splicing junctions.
sampling 100% (190246087) splicing reads. 327398 splicing junctions. 190706 known splicing junctions. 136692 novel splicing junctions.
null device 
          1