.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/8d37d30c32928e6db16b485a68c9af/.command.sh
Size: 474 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1)
Attempt

Content

#!/bin/bash -euo pipefail
# Predict contamination from VAF features
predict_contamination.py \
    "BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.features.csv" \
    --output "BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_1.predictions.csv" \
    --threshold 0.9999 \


cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION":
    python: $(python3 --version | sed 's/Python //g')
    predict_contamination: 1.0.0
END_VERSIONS