AIH curated blacklist: matched 6 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 83
Pass (FILTER=PASS): 2 (2.4%)
Fail (FILTER=FAIL): 81 (97.6%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 6
All 6 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 19
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 12
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 7
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 7
confidence_below_min(low<high): 6
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 4
confidence_below_min(medium<high);aih_curated_blacklist: 3
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2
aih_curated_blacklist: 1
Breakdown by confidence:
high: 2 pass, 2 fail (total: 4)
low: 0 pass, 51 fail (total: 51)
medium: 0 pass, 28 fail (total: 28)
Arriba filter: 83 rows -> 2 PASS; wrote BVT_FFPE_TRNA_crv_04_A23WKFTLT4_2.arriba.fusions.filtered.tsv and BVT_FFPE_TRNA_crv_04_A23WKFTLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: BVT_FFPE_TRNA_crv_04_A23WKFTLT4_2.arriba.fusions.filter_summary.txt