File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/d84a2eeed247f4ca702b7a96e179b4/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/6da869dcc4896e20d220552788e09a/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/d84a2eeed247f4ca702b7a96e179b4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/819e0830dd52905b0663b4fd372cad/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/d84a2eeed247f4ca702b7a96e179b4/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3/abundance.h5
Successfully converted BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3/abundance.h5 to BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3_kallisto_mqc.tsv
  Sample: BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3
  Mean Fragment Length: 119.0 bp
  Median Fragment Length: 114.0 bp
  pct_mito_est_counts: 0.02%
  pct_ribo_est_counts: 1.213%
  pct_hk_est_counts: 0.548%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.035%
  pct_ribo_tpm: 3.372%
  pct_hk_tpm: 0.779%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.798%