Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/2e054ec21d95c1ea84c9c6db68a398/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/2e054ec21d95c1ea84c9c6db68a398/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/f43e54b743c312e81e7d75c7773878/BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/a2b74cb0a50426a71caef35f08aa74/BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
NARS2--GAB2
starfusion
arriba
EXOC2--EPHA5
starfusion
arriba
RIC1--FMNL1
starfusion
arriba
ZSCAN22--WWC3
starfusion
arriba
MSI2--CLTC
starfusion
arriba
C22orf39--MYO18B-AS1
starfusion
arriba
GUSBP13--NAIP
starfusion
AC092070.2--MAN2B1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
DOK7--MICB
arriba
BMP2K--BMP2K
arriba
TVP23C--CDRT4
arriba
PCDHA4--PCDHA13
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
HIRA--MYO18B-AS1
arriba
ZNF525--AC007786.2
arriba
ZNF525--AC007786.3
arriba
AC092807.3--DDAH1
arriba
DNMT1--CASP14
arriba
DNMT1--OR1I1
arriba
SMG6--AC079310.1
arriba
SMG6--VDAC1P5
arriba
GTPBP2--AL008627.1
arriba
GTPBP2--MBOAT1
arriba
ZNF416--NLRP7
arriba
0%| | 0/27 [00:00<?, ?it/s]
Processing NARS2--GAB2: 0%| | 0/27 [00:00<?, ?it/s]
Processing NARS2--GAB2: 4%|▎ | 1/27 [00:00<00:02, 9.09it/s]
Processing EXOC2--EPHA5: 4%|▎ | 1/27 [00:00<00:02, 9.09it/s]
Processing EXOC2--EPHA5: 7%|▋ | 2/27 [00:00<00:02, 9.38it/s]
Processing RIC1--FMNL1: 7%|▋ | 2/27 [00:00<00:02, 9.38it/s]
Processing RIC1--FMNL1: 11%|█ | 3/27 [00:00<00:02, 9.48it/s]
Processing ZSCAN22--WWC3: 11%|█ | 3/27 [00:00<00:02, 9.48it/s]
Processing ZSCAN22--WWC3: 15%|█▍ | 4/27 [00:00<00:02, 9.53it/s]
Processing MSI2--CLTC: 15%|█▍ | 4/27 [00:00<00:02, 9.53it/s]
Processing MSI2--CLTC: 19%|█▊ | 5/27 [00:00<00:02, 9.56it/s]
Processing C22orf39--MYO18B-AS1: 19%|█▊ | 5/27 [00:00<00:02, 9.56it/s]
Processing C22orf39--MYO18B-AS1: 22%|██▏ | 6/27 [00:00<00:02, 9.58it/s]
Processing GUSBP13--NAIP: 22%|██▏ | 6/27 [00:00<00:02, 9.58it/s]
Processing GUSBP13--NAIP: 26%|██▌ | 7/27 [00:00<00:02, 9.59it/s]
Processing AC092070.2--MAN2B1: 26%|██▌ | 7/27 [00:00<00:02, 9.59it/s]
Processing AC092070.2--MAN2B1: 30%|██▉ | 8/27 [00:00<00:01, 9.59it/s]
Processing TLK2P1--AC110079.1: 30%|██▉ | 8/27 [00:00<00:01, 9.59it/s]
Processing TLK2P1--AC110079.1: 33%|███▎ | 9/27 [00:00<00:01, 9.60it/s]
Processing TLK2--AC240565.1: 33%|███▎ | 9/27 [00:00<00:01, 9.60it/s]
Processing TLK2--AC240565.1: 37%|███▋ | 10/27 [00:01<00:01, 9.60it/s]
Processing DOK7--MICB: 37%|███▋ | 10/27 [00:01<00:01, 9.60it/s]
Processing DOK7--MICB: 41%|████ | 11/27 [00:01<00:01, 9.60it/s]
Processing BMP2K--BMP2K: 41%|████ | 11/27 [00:01<00:01, 9.60it/s]
Processing BMP2K--BMP2K: 44%|████▍ | 12/27 [00:01<00:01, 9.61it/s]
Processing TVP23C--CDRT4: 44%|████▍ | 12/27 [00:01<00:01, 9.61it/s]
Processing TVP23C--CDRT4: 48%|████▊ | 13/27 [00:01<00:01, 9.61it/s]
Processing PCDHA4--PCDHA13: 48%|████▊ | 13/27 [00:01<00:01, 9.61it/s]
Processing PCDHA4--PCDHA13: 52%|█████▏ | 14/27 [00:01<00:01, 9.61it/s]
Processing PCDHA4--PCDHAC1: 52%|█████▏ | 14/27 [00:01<00:01, 9.61it/s]
Processing PCDHA4--PCDHAC1: 56%|█████▌ | 15/27 [00:01<00:01, 9.61it/s]
Processing PCDHA4--PCDHAC2: 56%|█████▌ | 15/27 [00:01<00:01, 9.61it/s]
Processing PCDHA4--PCDHAC2: 59%|█████▉ | 16/27 [00:01<00:01, 9.61it/s]
Processing HIRA--MYO18B-AS1: 59%|█████▉ | 16/27 [00:01<00:01, 9.61it/s]
Processing HIRA--MYO18B-AS1: 63%|██████▎ | 17/27 [00:01<00:01, 9.61it/s]
Processing ZNF525--AC007786.2: 63%|██████▎ | 17/27 [00:01<00:01, 9.61it/s]
Processing ZNF525--AC007786.2: 67%|██████▋ | 18/27 [00:01<00:00, 9.61it/s]
Processing ZNF525--AC007786.3: 67%|██████▋ | 18/27 [00:01<00:00, 9.61it/s]
Processing ZNF525--AC007786.3: 70%|███████ | 19/27 [00:01<00:00, 9.61it/s]
Processing AC092807.3--DDAH1: 70%|███████ | 19/27 [00:01<00:00, 9.61it/s]
Processing AC092807.3--DDAH1: 74%|███████▍ | 20/27 [00:02<00:00, 9.61it/s]
Processing DNMT1--CASP14: 74%|███████▍ | 20/27 [00:02<00:00, 9.61it/s]
Processing DNMT1--CASP14: 78%|███████▊ | 21/27 [00:02<00:00, 9.61it/s]
Processing DNMT1--OR1I1: 78%|███████▊ | 21/27 [00:02<00:00, 9.61it/s]
Processing DNMT1--OR1I1: 81%|████████▏ | 22/27 [00:02<00:00, 9.61it/s]
Processing SMG6--AC079310.1: 81%|████████▏ | 22/27 [00:02<00:00, 9.61it/s]
Processing SMG6--AC079310.1: 85%|████████▌ | 23/27 [00:02<00:00, 9.61it/s]
Processing SMG6--VDAC1P5: 85%|████████▌ | 23/27 [00:02<00:00, 9.61it/s]
Processing SMG6--VDAC1P5: 89%|████████▉ | 24/27 [00:02<00:00, 9.61it/s]
Processing GTPBP2--AL008627.1: 89%|████████▉ | 24/27 [00:02<00:00, 9.61it/s]
Processing GTPBP2--AL008627.1: 93%|█████████▎| 25/27 [00:02<00:00, 9.61it/s]
Processing GTPBP2--MBOAT1: 93%|█████████▎| 25/27 [00:02<00:00, 9.61it/s]
Processing GTPBP2--MBOAT1: 96%|█████████▋| 26/27 [00:02<00:00, 9.61it/s]
Processing ZNF416--NLRP7: 96%|█████████▋| 26/27 [00:02<00:00, 9.61it/s]
Processing ZNF416--NLRP7: 100%|██████████| 27/27 [00:02<00:00, 9.61it/s]
Processing ZNF416--NLRP7: 100%|██████████| 27/27 [00:02<00:00, 9.59it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory