Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/82502c9eeadf8fe8f76ec3338283f2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/82502c9eeadf8fe8f76ec3338283f2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/55ba7cb76d62f563f9e9f01f19fdf8/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/7ba4a71cca83f6facee8a0767ba77f/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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