Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/b137a04b7f21e2224c28ccf75d243c/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/b137a04b7f21e2224c28ccf75d243c/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/aadfd18b39aa261c1f27b3128eceb7/BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.md.bam --METRICS_FILE BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:50:45.883 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:50:45 GMT 2026] MarkDuplicates --INPUT BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.md.bam --METRICS_FILE BVT_FFPE_TRNA_bld_02_A23WKFTLT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:50:45 GMT 2026] Executing as ?@nf-0fb137a04b7f21e2224c28ccf75d243c-c6ba5-dl7l6 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:50:45 MarkDuplicates Start of doWork freeMemory: 105829704; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:50:45 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:50:45 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,051,547
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 3392 as yet unmatched pairs. 853 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,665,892
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 5523 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 3s. Last read position: chr1:3,787,309
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 7925 as yet unmatched pairs. 27 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:8,360,983
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 10622 as yet unmatched pairs. 302 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:10,472,331
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 12865 as yet unmatched pairs. 88 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:12,456,015
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 15254 as yet unmatched pairs. 127 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:16,133,180
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 17457 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:17,409,116
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 20225 as yet unmatched pairs. 501 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:19,385,555
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 22545 as yet unmatched pairs. 454 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:21,757,754
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 24646 as yet unmatched pairs. 292 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:23,089,005
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 26821 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:24,666,820
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 28946 as yet unmatched pairs. 47 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:26,571,491
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 31462 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:27,410,130
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 34366 as yet unmatched pairs. 436 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:30,876,944
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 36604 as yet unmatched pairs. 180 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:31,793,316
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 39654 as yet unmatched pairs. 570 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:32,770,361
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 41901 as yet unmatched pairs. 414 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:35,370,430
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 44295 as yet unmatched pairs. 212 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:39,282,217
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 46616 as yet unmatched pairs. 278 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:40,271,942
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 48702 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:42,931,191
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 53239 as yet unmatched pairs. 2209 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:43,603,990
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 54459 as yet unmatched pairs. 650 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:44,778,001
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 58153 as yet unmatched pairs. 1760 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:46,310,269
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 59703 as yet unmatched pairs. 1087 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:50,974,087
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 60933 as yet unmatched pairs. 27 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:54,043,441
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 64549 as yet unmatched pairs. 1345 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:61,775,218
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 66533 as yet unmatched pairs. 748 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:74,198,271
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 67986 as yet unmatched pairs. 43 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:86,715,759
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 70225 as yet unmatched pairs. 242 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:93,346,723
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 72330 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:101,787,089
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 74090 as yet unmatched pairs. 21 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:109,668,424
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 81938 as yet unmatched pairs. 5642 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:110,339,971
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 78697 as yet unmatched pairs. 226 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:113,895,101
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 80862 as yet unmatched pairs. 54 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:116,389,523
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 84000 as yet unmatched pairs. 958 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:119,915,514
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 85631 as yet unmatched pairs. 477 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:120,913,321
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 86990 as yet unmatched pairs. 20 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:146,156,153
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 88948 as yet unmatched pairs. 618 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:148,540,977
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 89500 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:149,813,364
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 90936 as yet unmatched pairs. 547 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:150,492,307
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 92191 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:151,400,040
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 95021 as yet unmatched pairs. 421 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:153,561,402
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 101663 as yet unmatched pairs. 4896 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,648
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 101336 as yet unmatched pairs. 2335 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:155,015,119
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 101346 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:155,481,235
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 103691 as yet unmatched pairs. 157 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:156,134,843
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 106549 as yet unmatched pairs. 540 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:156,646,967
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 108754 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:160,311,868
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 111267 as yet unmatched pairs. 335 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:162,522,428
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 113812 as yet unmatched pairs. 392 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:171,540,790
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 116113 as yet unmatched pairs. 276 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:179,165,091
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 118085 as yet unmatched pairs. 40 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:183,121,739
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 120487 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:186,353,834
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 123235 as yet unmatched pairs. 693 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:200,909,291
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 124986 as yet unmatched pairs. 446 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:202,745,906
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 127396 as yet unmatched pairs. 469 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:204,257,358
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 129355 as yet unmatched pairs. 249 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:206,930,305
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 131330 as yet unmatched pairs. 32 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:211,304,112
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 134043 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:222,687,640
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 136273 as yet unmatched pairs. 390 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:226,065,758
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 139240 as yet unmatched pairs. 1273 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr1:229,286,498
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 141032 as yet unmatched pairs. 447 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:235,759,185
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 143443 as yet unmatched pairs. 256 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:246,726,883
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 146138 as yet unmatched pairs. 798 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 3s. Last read position: chr2:9,393,581
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 147733 as yet unmatched pairs. 147276 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:20,037,316
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 150912 as yet unmatched pairs. 150451 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,019
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 156800 as yet unmatched pairs. 156334 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:24,049,857
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 154534 as yet unmatched pairs. 154058 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:27,071,376
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 156663 as yet unmatched pairs. 156180 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr2:28,776,892
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 163227 as yet unmatched pairs. 162733 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:32,509,760
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 161482 as yet unmatched pairs. 160978 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 451120 as yet unmatched pairs. 137773 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,265
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 1096977 as yet unmatched pairs. 84658 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 1188853 as yet unmatched pairs. 77059 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:36,464,548
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 1257893 as yet unmatched pairs. 71487 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:42,263,250
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 1255798 as yet unmatched pairs. 69382 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:43,947,758
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 1253562 as yet unmatched pairs. 67139 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:54,626,000
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 1251144 as yet unmatched pairs. 64701 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:58,252,442
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 1248645 as yet unmatched pairs. 62193 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:65,069,700
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 1246751 as yet unmatched pairs. 60292 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:71,134,627
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 1244425 as yet unmatched pairs. 57960 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:74,462,251
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 1242361 as yet unmatched pairs. 55884 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:85,648,772
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 1239658 as yet unmatched pairs. 53170 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:95,276,984
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 1238924 as yet unmatched pairs. 52435 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:96,864,804
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 1235429 as yet unmatched pairs. 48938 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:101,005,965
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 1239711 as yet unmatched pairs. 53206 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:108,675,913
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 1231575 as yet unmatched pairs. 45055 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:109,824,308
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 1229327 as yet unmatched pairs. 42806 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:112,066,950
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 1228468 as yet unmatched pairs. 41946 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:113,183,405
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 1226599 as yet unmatched pairs. 40071 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:113,951,479
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 1225060 as yet unmatched pairs. 38517 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:130,914,794
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 1222042 as yet unmatched pairs. 35480 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:149,571,060
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 1220258 as yet unmatched pairs. 33692 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:160,138,133
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 1217939 as yet unmatched pairs. 31359 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:171,050,159
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 1215516 as yet unmatched pairs. 28911 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:177,231,467
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 1213756 as yet unmatched pairs. 27143 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:186,649,861
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 1211259 as yet unmatched pairs. 24642 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:197,398,535
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 1209819 as yet unmatched pairs. 23199 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:202,542,384
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 1207062 as yet unmatched pairs. 20428 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:208,248,538
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 1205576 as yet unmatched pairs. 18915 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:216,499,960
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 1206963 as yet unmatched pairs. 20293 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:218,592,633
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 1200521 as yet unmatched pairs. 13848 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:221,944,535
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 1197886 as yet unmatched pairs. 11205 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:230,876,943
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 1196274 as yet unmatched pairs. 9568 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:233,636,545
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 1196326 as yet unmatched pairs. 9617 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:233,772,432
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 1193805 as yet unmatched pairs. 7089 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:241,096,055
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 1188507 as yet unmatched pairs. 1778 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 2s. Last read position: chr3:4,983,224
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 1186610 as yet unmatched pairs. 74196 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:10,304,027
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 1184104 as yet unmatched pairs. 71641 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:12,941,668
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 1181753 as yet unmatched pairs. 69287 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:22,382,048
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 1179516 as yet unmatched pairs. 67036 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:33,092,919
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 1177379 as yet unmatched pairs. 64892 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:39,102,740
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 1174980 as yet unmatched pairs. 62481 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:41,225,171
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 1173571 as yet unmatched pairs. 61048 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:44,629,223
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 1170577 as yet unmatched pairs. 58053 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:47,121,425
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 1168805 as yet unmatched pairs. 56272 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:48,413,952
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 1166241 as yet unmatched pairs. 53707 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr3:48,659,260
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 1163141 as yet unmatched pairs. 50600 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:49,111,941
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 1160843 as yet unmatched pairs. 48287 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:49,687,363
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 1158151 as yet unmatched pairs. 45589 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:50,337,916
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 1155686 as yet unmatched pairs. 43119 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:52,248,660
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 1153314 as yet unmatched pairs. 40738 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:53,192,193
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 1151159 as yet unmatched pairs. 38582 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:58,110,135
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 1148996 as yet unmatched pairs. 36411 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:69,047,941
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 1146599 as yet unmatched pairs. 34013 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:100,728,831
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 1145945 as yet unmatched pairs. 33352 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:113,010,642
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 1142500 as yet unmatched pairs. 29898 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:122,337,638
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 1140558 as yet unmatched pairs. 27941 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:126,136,800
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 1138899 as yet unmatched pairs. 26267 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:128,899,421
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 1135612 as yet unmatched pairs. 22977 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:133,587,916
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 1133664 as yet unmatched pairs. 21027 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:142,493,197
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 1131032 as yet unmatched pairs. 18395 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:150,742,205
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 1128706 as yet unmatched pairs. 16065 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:161,224,994
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 1126889 as yet unmatched pairs. 14245 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:172,710,900
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 1124493 as yet unmatched pairs. 11834 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:183,951,916
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 1122230 as yet unmatched pairs. 9560 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:184,334,917
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 1119775 as yet unmatched pairs. 7103 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,319
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 1118853 as yet unmatched pairs. 6177 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:195,619,417
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 1116270 as yet unmatched pairs. 3593 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:196,827,227
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 1114007 as yet unmatched pairs. 1328 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr4:1,212,383
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 1111861 as yet unmatched pairs. 50817 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:1,744,958
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 1110106 as yet unmatched pairs. 49061 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr4:1,801,886
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 1107412 as yet unmatched pairs. 46367 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr4:1,805,805
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 1107030 as yet unmatched pairs. 45984 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:1,807,201
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 1102385 as yet unmatched pairs. 41337 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:3,417,489
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 1098192 as yet unmatched pairs. 37133 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:8,416,384
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 1095767 as yet unmatched pairs. 34694 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:25,234,124
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 1093483 as yet unmatched pairs. 32407 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:39,838,119
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 1091258 as yet unmatched pairs. 30163 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:48,897,824
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 1089471 as yet unmatched pairs. 28344 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:67,519,247
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 1086755 as yet unmatched pairs. 25627 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:76,756,516
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 1084492 as yet unmatched pairs. 23349 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:84,688,194
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 1082374 as yet unmatched pairs. 21228 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:87,047,193
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 1080717 as yet unmatched pairs. 19566 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:99,948,812
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 1078664 as yet unmatched pairs. 17504 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:112,145,638
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 1076132 as yet unmatched pairs. 14969 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:127,984,386
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 1074172 as yet unmatched pairs. 13007 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:145,539,845
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 1072060 as yet unmatched pairs. 10883 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:151,705,147
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 1070171 as yet unmatched pairs. 8992 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr4:169,992,258
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 1068041 as yet unmatched pairs. 6842 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:174,493,232
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 1073408 as yet unmatched pairs. 12186 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:186,163,553
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 1063335 as yet unmatched pairs. 2111 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:233,520
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 1061381 as yet unmatched pairs. 60780 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:10,680,722
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 1059678 as yet unmatched pairs. 59071 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr5:17,275,250
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 1056323 as yet unmatched pairs. 55716 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:37,348,557
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 1054263 as yet unmatched pairs. 53640 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 2s. Last read position: chr5:54,518,009
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 1051968 as yet unmatched pairs. 51328 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:66,054,739
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 1050272 as yet unmatched pairs. 49621 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:71,596,340
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 1048047 as yet unmatched pairs. 47394 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:77,582,402
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 1045906 as yet unmatched pairs. 45242 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,465
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 1046983 as yet unmatched pairs. 46317 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:96,747,377
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 1042011 as yet unmatched pairs. 41338 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:113,143,279
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 1039682 as yet unmatched pairs. 39003 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:127,753,933
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 1037515 as yet unmatched pairs. 36834 records in RAM.
INFO 2026-06-08 08:55:47 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:133,091,232
INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 1035497 as yet unmatched pairs. 34808 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:138,166,555
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 1033254 as yet unmatched pairs. 32560 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:139,561,746
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 1031622 as yet unmatched pairs. 30927 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:141,247,251
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 1028948 as yet unmatched pairs. 28211 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:141,928,169
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 1026951 as yet unmatched pairs. 26212 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:147,831,539
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 1024732 as yet unmatched pairs. 23983 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,179
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 1030961 as yet unmatched pairs. 30210 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:150,446,801
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 1022254 as yet unmatched pairs. 21502 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr5:154,453,436
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 1017435 as yet unmatched pairs. 16663 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:168,492,782
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 1015343 as yet unmatched pairs. 14569 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:171,407,757
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 1027477 as yet unmatched pairs. 26703 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:177,211,030
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 1011373 as yet unmatched pairs. 10580 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:179,623,040
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 1009113 as yet unmatched pairs. 8318 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:179,823,920
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 1009141 as yet unmatched pairs. 8342 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:180,571,277
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 1003671 as yet unmatched pairs. 2871 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:181,243,697
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 1002991 as yet unmatched pairs. 2190 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr6:7,231,780
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 998682 as yet unmatched pairs. 66138 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:16,145,241
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 996308 as yet unmatched pairs. 63763 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:26,055,883
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 993657 as yet unmatched pairs. 61107 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:27,824,225
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 991327 as yet unmatched pairs. 58775 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:30,489,539
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 989383 as yet unmatched pairs. 56831 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:30,899,161
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 987239 as yet unmatched pairs. 54683 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:31,640,495
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 984678 as yet unmatched pairs. 52114 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,386
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 982378 as yet unmatched pairs. 49812 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:32,189,755
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 980235 as yet unmatched pairs. 47668 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:33,279,721
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 977886 as yet unmatched pairs. 45305 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:34,247,480
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 975694 as yet unmatched pairs. 43113 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:36,200,924
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 973162 as yet unmatched pairs. 40559 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr6:42,077,186
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 970570 as yet unmatched pairs. 37963 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:43,369,176
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 968171 as yet unmatched pairs. 35561 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:44,250,020
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 966034 as yet unmatched pairs. 33423 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:47,286,289
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 964296 as yet unmatched pairs. 31683 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:56,506,677
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 961398 as yet unmatched pairs. 28777 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:69,713,717
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 959304 as yet unmatched pairs. 26682 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:80,789,505
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 957173 as yet unmatched pairs. 24551 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:87,636,418
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 955144 as yet unmatched pairs. 22521 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:106,511,658
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 953137 as yet unmatched pairs. 20502 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:110,985,096
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 950673 as yet unmatched pairs. 18028 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:125,153,942
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 948510 as yet unmatched pairs. 15865 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:136,465,412
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 946247 as yet unmatched pairs. 13583 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:139,373,867
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 944066 as yet unmatched pairs. 11397 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:149,684,299
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 941569 as yet unmatched pairs. 8898 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr6:158,092,942
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 939487 as yet unmatched pairs. 6807 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:158,785,488
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 943952 as yet unmatched pairs. 11269 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:163,478,780
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 935180 as yet unmatched pairs. 2497 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr7:20,986
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 932723 as yet unmatched pairs. 64678 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:2,947,681
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 930086 as yet unmatched pairs. 62039 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,069
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 933269 as yet unmatched pairs. 65218 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:6,024,665
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 925120 as yet unmatched pairs. 57067 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:16,801,359
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 923750 as yet unmatched pairs. 55674 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:25,136,569
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 920843 as yet unmatched pairs. 52762 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:35,832,800
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 918627 as yet unmatched pairs. 50543 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:44,694,460
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 916073 as yet unmatched pairs. 47979 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:55,163,775
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 914142 as yet unmatched pairs. 46042 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:66,941,894
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 911443 as yet unmatched pairs. 43338 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr7:73,297,028
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 910553 as yet unmatched pairs. 42448 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:74,748,028
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 908619 as yet unmatched pairs. 40509 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:75,437,664
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 907491 as yet unmatched pairs. 39380 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,806
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 912329 as yet unmatched pairs. 44217 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:76,515,090
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 903940 as yet unmatched pairs. 35828 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:87,382,142
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 901127 as yet unmatched pairs. 33015 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:93,341,517
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 898807 as yet unmatched pairs. 30687 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:99,054,797
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 896475 as yet unmatched pairs. 28353 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:100,219,760
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 894098 as yet unmatched pairs. 25974 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:100,952,292
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 891592 as yet unmatched pairs. 23464 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:101,159,063
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 889846 as yet unmatched pairs. 21715 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:102,640,747
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 889081 as yet unmatched pairs. 20948 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:107,554,323
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 886850 as yet unmatched pairs. 18712 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:121,350,481
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 884775 as yet unmatched pairs. 16628 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:128,457,365
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 882748 as yet unmatched pairs. 14601 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr7:135,166,550
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 880379 as yet unmatched pairs. 12227 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:140,096,663
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 878062 as yet unmatched pairs. 9897 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 2s. Last read position: chr7:143,265,019
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 876751 as yet unmatched pairs. 8586 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:144,362,796
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 874596 as yet unmatched pairs. 6420 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:151,041,169
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 872185 as yet unmatched pairs. 4009 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:152,315,317
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 869942 as yet unmatched pairs. 1766 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 65s. Last read position: chr8:9,556,323
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 867524 as yet unmatched pairs. 72187 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr8:17,554,596
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 864930 as yet unmatched pairs. 69592 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr8:22,128,930
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 862738 as yet unmatched pairs. 67398 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr8:23,529,159
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 860405 as yet unmatched pairs. 65062 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:30,069,675
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 859886 as yet unmatched pairs. 64543 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr8:38,209,153
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 855720 as yet unmatched pairs. 60376 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr8:40,153,514
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 853493 as yet unmatched pairs. 58145 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:42,959,281
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 850949 as yet unmatched pairs. 55594 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr8:51,820,679
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 849007 as yet unmatched pairs. 53649 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:56,074,393
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 846179 as yet unmatched pairs. 50820 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:65,747,652
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 844115 as yet unmatched pairs. 48744 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr8:70,586,932
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 843838 as yet unmatched pairs. 48462 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:81,521,940
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 840086 as yet unmatched pairs. 44706 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:94,671,486
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 838337 as yet unmatched pairs. 42955 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:99,371,118
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 835863 as yet unmatched pairs. 40476 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:100,709,133
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 838577 as yet unmatched pairs. 43189 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:100,721,398
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 835826 as yet unmatched pairs. 40437 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:103,068,660
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 829187 as yet unmatched pairs. 33776 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:118,110,431
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 827395 as yet unmatched pairs. 31982 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:125,007,447
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 824613 as yet unmatched pairs. 29189 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:133,246,640
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 824822 as yet unmatched pairs. 29392 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:140,744,731
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 820096 as yet unmatched pairs. 24663 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,275,051
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 816946 as yet unmatched pairs. 21509 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,729,200
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 815155 as yet unmatched pairs. 19718 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,463
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 812360 as yet unmatched pairs. 16923 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,314
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 812468 as yet unmatched pairs. 17031 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,725
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 811548 as yet unmatched pairs. 16107 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,196
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 810888 as yet unmatched pairs. 15440 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,852
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 809618 as yet unmatched pairs. 14170 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,414
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 808268 as yet unmatched pairs. 12820 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,917,755
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 806737 as yet unmatched pairs. 11289 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,931,610
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 802968 as yet unmatched pairs. 7518 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:144,262,207
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 799880 as yet unmatched pairs. 4426 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:144,581,016
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 796553 as yet unmatched pairs. 1093 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:5,077,320
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 794290 as yet unmatched pairs. 30331 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:19,346,798
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 792156 as yet unmatched pairs. 28192 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:33,294,757
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 789674 as yet unmatched pairs. 25704 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:35,676,118
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 787346 as yet unmatched pairs. 23359 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:69,227,779
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 785388 as yet unmatched pairs. 21384 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:86,282,381
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 783149 as yet unmatched pairs. 19136 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 2s. Last read position: chr9:96,321,288
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 780851 as yet unmatched pairs. 16823 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:110,251,388
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 779054 as yet unmatched pairs. 15022 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:121,158,860
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 776359 as yet unmatched pairs. 12322 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:127,517,881
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 774027 as yet unmatched pairs. 9987 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:129,095,417
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 771764 as yet unmatched pairs. 7720 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:133,071,265
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 769540 as yet unmatched pairs. 5491 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:136,476,865
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 767549 as yet unmatched pairs. 3485 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:137,614,352
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 764454 as yet unmatched pairs. 388 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr10:4,968,825
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 764111 as yet unmatched pairs. 42152 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr10:5,098,846
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 762143 as yet unmatched pairs. 40183 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr10:8,055,533
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 758314 as yet unmatched pairs. 36352 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr10:17,229,407
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 755900 as yet unmatched pairs. 33937 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr10:27,122,871
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 753812 as yet unmatched pairs. 31846 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr10:32,028,449
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 753108 as yet unmatched pairs. 31138 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:35,033,165
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 750912 as yet unmatched pairs. 28942 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:42,594,538
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 747967 as yet unmatched pairs. 25993 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,859
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 746903 as yet unmatched pairs. 24922 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:49,107,832
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 744406 as yet unmatched pairs. 22423 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:68,788,178
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 742328 as yet unmatched pairs. 20339 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:73,160,526
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 740036 as yet unmatched pairs. 18045 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:77,853,470
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 737796 as yet unmatched pairs. 15793 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:86,942,322
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 735541 as yet unmatched pairs. 13513 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:91,836,917
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 733451 as yet unmatched pairs. 11417 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:96,750,563
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 731248 as yet unmatched pairs. 9209 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:102,033,106
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 729121 as yet unmatched pairs. 7078 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr10:111,000,465
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 727055 as yet unmatched pairs. 4999 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr10:122,211,620
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 725052 as yet unmatched pairs. 2986 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:133,283,057
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 722560 as yet unmatched pairs. 490 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr11:613,810
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 719720 as yet unmatched pairs. 90062 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr11:1,288,668
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 717161 as yet unmatched pairs. 87502 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:1,761,393
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 717926 as yet unmatched pairs. 88265 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:3,006,878
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 711666 as yet unmatched pairs. 82002 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:7,639,742
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 709765 as yet unmatched pairs. 80096 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:9,440,460
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 707130 as yet unmatched pairs. 77461 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:10,805,997
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 705714 as yet unmatched pairs. 76043 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:17,074,426
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 704352 as yet unmatched pairs. 74681 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:31,432,523
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 700381 as yet unmatched pairs. 70694 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:34,642,682
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 699560 as yet unmatched pairs. 69871 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:46,382,356
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 696085 as yet unmatched pairs. 66392 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:47,779,169
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 693392 as yet unmatched pairs. 63699 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:57,806,926
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 691437 as yet unmatched pairs. 61737 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:59,861,582
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 689918 as yet unmatched pairs. 60216 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:61,964,749
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 690655 as yet unmatched pairs. 60949 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,167
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 684999 as yet unmatched pairs. 55291 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,612
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 683136 as yet unmatched pairs. 53428 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 2s. Last read position: chr11:62,786,715
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 680200 as yet unmatched pairs. 50492 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:64,255,771
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 677701 as yet unmatched pairs. 47990 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:65,096,316
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 675132 as yet unmatched pairs. 45415 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:65,526,165
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 672815 as yet unmatched pairs. 43065 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:65,780,531
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 669724 as yet unmatched pairs. 39973 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:66,639,704
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 667610 as yet unmatched pairs. 37859 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:67,441,336
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 664678 as yet unmatched pairs. 34927 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:68,406,600
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 661893 as yet unmatched pairs. 32141 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,879
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 662469 as yet unmatched pairs. 32715 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:71,498,476
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 657463 as yet unmatched pairs. 27708 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:73,234,737
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 654697 as yet unmatched pairs. 24938 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:76,513,419
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 652259 as yet unmatched pairs. 22496 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:85,974,791
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 650692 as yet unmatched pairs. 20926 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr11:96,093,183
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 648238 as yet unmatched pairs. 18465 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr11:108,173,804
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 645977 as yet unmatched pairs. 16199 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:118,077,196
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 646447 as yet unmatched pairs. 16666 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:118,584,546
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 641641 as yet unmatched pairs. 11859 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:119,664,909
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 639509 as yet unmatched pairs. 9727 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:121,550,064
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 637170 as yet unmatched pairs. 7387 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:124,747,625
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 636723 as yet unmatched pairs. 6940 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr11:128,970,087
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 632723 as yet unmatched pairs. 2940 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:134,225,157
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 629954 as yet unmatched pairs. 152 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 2s. Last read position: chr12:6,018,919
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 627830 as yet unmatched pairs. 75074 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:6,492,889
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 626174 as yet unmatched pairs. 73417 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr12:6,916,496
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 623413 as yet unmatched pairs. 70656 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr12:9,101,494
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 620902 as yet unmatched pairs. 68145 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:13,002,653
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 618696 as yet unmatched pairs. 65936 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:21,635,550
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 617868 as yet unmatched pairs. 65098 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:30,714,939
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 614287 as yet unmatched pairs. 61517 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr12:45,934,180
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 612551 as yet unmatched pairs. 59780 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:47,857,202
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 610018 as yet unmatched pairs. 57245 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:49,097,614
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 607458 as yet unmatched pairs. 54683 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:49,758,752
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 607783 as yet unmatched pairs. 55002 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:52,173,082
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 603304 as yet unmatched pairs. 50520 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,888
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 602046 as yet unmatched pairs. 49260 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,501
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 599163 as yet unmatched pairs. 46375 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,108
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 597453 as yet unmatched pairs. 44661 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:55,952,043
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 594374 as yet unmatched pairs. 41580 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:56,160,538
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 595249 as yet unmatched pairs. 42455 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:56,642,818
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 590049 as yet unmatched pairs. 37253 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 2s. Last read position: chr12:57,098,580
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 589089 as yet unmatched pairs. 36293 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr12:57,231,741
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 585017 as yet unmatched pairs. 32221 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:62,524,556
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 583061 as yet unmatched pairs. 30265 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:68,809,226
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 583718 as yet unmatched pairs. 30920 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:76,060,138
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 579133 as yet unmatched pairs. 26335 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:93,487,558
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 576310 as yet unmatched pairs. 23510 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:101,780,186
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 574343 as yet unmatched pairs. 21541 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:108,623,677
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 571975 as yet unmatched pairs. 19167 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:111,470,601
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 569748 as yet unmatched pairs. 16931 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:112,916,728
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 568038 as yet unmatched pairs. 15216 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:115,966,182
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 565032 as yet unmatched pairs. 12209 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:120,196,896
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 565852 as yet unmatched pairs. 13027 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:121,274,157
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 560364 as yet unmatched pairs. 7538 records in RAM.
INFO 2026-06-08 09:02:47 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr12:123,261,672
INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 558881 as yet unmatched pairs. 6051 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:130,872,115
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 556427 as yet unmatched pairs. 3591 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:132,843,013
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 553268 as yet unmatched pairs. 430 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr13:20,189,486
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 551312 as yet unmatched pairs. 20593 records in RAM.
INFO 2026-06-08 09:02:53 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr13:27,253,763
INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 552213 as yet unmatched pairs. 21493 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr13:32,527,483
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 547889 as yet unmatched pairs. 17166 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr13:42,299,637
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 544889 as yet unmatched pairs. 14165 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr13:45,397,258
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 542516 as yet unmatched pairs. 11792 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr13:51,374,208
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 540227 as yet unmatched pairs. 9502 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr13:77,176,588
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 538334 as yet unmatched pairs. 7607 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr13:98,385,667
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 536036 as yet unmatched pairs. 5308 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr13:108,210,710
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 533685 as yet unmatched pairs. 2955 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr13:113,631,646
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 531177 as yet unmatched pairs. 446 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr14:21,359,504
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 528747 as yet unmatched pairs. 40906 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr14:23,061,463
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 526281 as yet unmatched pairs. 38440 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr14:23,644,473
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 528316 as yet unmatched pairs. 40473 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr14:24,376,782
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 521588 as yet unmatched pairs. 33743 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr14:33,950,704
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 519734 as yet unmatched pairs. 31888 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr14:49,583,642
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 524716 as yet unmatched pairs. 36870 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr14:52,666,443
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 515837 as yet unmatched pairs. 27986 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:58,260,943
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 512756 as yet unmatched pairs. 24903 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr14:64,126,732
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 510379 as yet unmatched pairs. 22523 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr14:67,583,772
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 507952 as yet unmatched pairs. 20096 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:71,589,324
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 505575 as yet unmatched pairs. 17719 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr14:74,902,234
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 503305 as yet unmatched pairs. 15448 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:77,673,921
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 500814 as yet unmatched pairs. 12948 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr14:92,070,886
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 498599 as yet unmatched pairs. 10733 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr14:99,493,514
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 496539 as yet unmatched pairs. 8657 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:102,083,110
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 494787 as yet unmatched pairs. 6905 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr14:103,336,822
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 492009 as yet unmatched pairs. 4126 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:104,894,905
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 489057 as yet unmatched pairs. 1173 records in RAM.
INFO 2026-06-08 09:03:38 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 2s. Last read position: chr15:24,962,161
INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 487072 as yet unmatched pairs. 61762 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr15:30,904,676
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 485123 as yet unmatched pairs. 59806 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr15:34,529,018
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 483128 as yet unmatched pairs. 57811 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr15:40,462,066
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 481122 as yet unmatched pairs. 55797 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr15:41,696,946
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 479691 as yet unmatched pairs. 54365 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr15:42,386,166
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 476656 as yet unmatched pairs. 51330 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr15:43,681,738
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 475052 as yet unmatched pairs. 49722 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr15:44,337,839
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 472918 as yet unmatched pairs. 47588 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr15:45,682,540
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 470108 as yet unmatched pairs. 44774 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr15:51,869,244
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 467736 as yet unmatched pairs. 42397 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr15:56,961,369
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 465972 as yet unmatched pairs. 40630 records in RAM.
INFO 2026-06-08 09:03:56 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr15:59,116,754
INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 463359 as yet unmatched pairs. 38017 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr15:62,023,458
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 461623 as yet unmatched pairs. 36281 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr15:64,156,081
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 460068 as yet unmatched pairs. 34725 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr15:65,877,436
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 457108 as yet unmatched pairs. 31764 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:67,181,379
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 454461 as yet unmatched pairs. 29116 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:70,919,101
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 451793 as yet unmatched pairs. 26446 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:72,210,425
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 453176 as yet unmatched pairs. 27828 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:73,998,030
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 449801 as yet unmatched pairs. 24449 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:74,854,095
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 444779 as yet unmatched pairs. 19427 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr15:75,552,249
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 442012 as yet unmatched pairs. 16660 records in RAM.
INFO 2026-06-08 09:04:12 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr15:78,484,860
INFO 2026-06-08 09:04:12 MarkDuplicates Tracking 439812 as yet unmatched pairs. 14459 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:79,313,917
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 437989 as yet unmatched pairs. 12633 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr15:83,018,730
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 435382 as yet unmatched pairs. 10026 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr15:88,906,751
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 433208 as yet unmatched pairs. 7852 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr15:90,230,424
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 431472 as yet unmatched pairs. 6115 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:92,617,596
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 429703 as yet unmatched pairs. 4344 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr15:100,988,672
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 425951 as yet unmatched pairs. 589 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:634,507
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 423609 as yet unmatched pairs. 65004 records in RAM.
INFO 2026-06-08 09:04:26 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:1,759,954
INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 420887 as yet unmatched pairs. 62282 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr16:2,234,251
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 418053 as yet unmatched pairs. 59448 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr16:2,766,839
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 416401 as yet unmatched pairs. 57793 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:3,850,559
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 413545 as yet unmatched pairs. 54933 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:10,537,937
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 411405 as yet unmatched pairs. 52789 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:14,841,403
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 409017 as yet unmatched pairs. 50400 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:15,133,853
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 407829 as yet unmatched pairs. 49212 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:16,329,492
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 406714 as yet unmatched pairs. 48085 records in RAM.
INFO 2026-06-08 09:04:39 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:18,358,435
INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 406279 as yet unmatched pairs. 47650 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:18,797,964
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 407286 as yet unmatched pairs. 48657 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,478
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 402689 as yet unmatched pairs. 44056 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,483
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 402524 as yet unmatched pairs. 43891 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:22,533,847
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 400975 as yet unmatched pairs. 42342 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:24,567,798
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 399271 as yet unmatched pairs. 40638 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:28,723,269
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 397151 as yet unmatched pairs. 38517 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:29,454,796
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 396193 as yet unmatched pairs. 37553 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr16:29,925,921
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 393941 as yet unmatched pairs. 35301 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:30,118,437
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 391658 as yet unmatched pairs. 33018 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:30,707,582
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 389949 as yet unmatched pairs. 31308 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:31,185,132
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 388026 as yet unmatched pairs. 29382 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:48,561,649
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 385094 as yet unmatched pairs. 26449 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:56,467,905
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 383087 as yet unmatched pairs. 24436 records in RAM.
INFO 2026-06-08 09:05:00 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:58,545,384
INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 380716 as yet unmatched pairs. 22065 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:67,538,772
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 378141 as yet unmatched pairs. 19490 records in RAM.
INFO 2026-06-08 09:05:03 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:68,810,304
INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 375775 as yet unmatched pairs. 17123 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:69,693,620
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 373595 as yet unmatched pairs. 14942 records in RAM.
INFO 2026-06-08 09:05:07 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr16:70,674,318
INFO 2026-06-08 09:05:07 MarkDuplicates Tracking 371331 as yet unmatched pairs. 12678 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:74,675,028
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 368840 as yet unmatched pairs. 10184 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:83,808,629
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 367113 as yet unmatched pairs. 8457 records in RAM.
INFO 2026-06-08 09:05:12 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr16:87,708,049
INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 363708 as yet unmatched pairs. 5050 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:89,530,786
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 361049 as yet unmatched pairs. 2390 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr17:747,912
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 358318 as yet unmatched pairs. 108447 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:1,673,450
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 356148 as yet unmatched pairs. 106277 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:4,087,518
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 353495 as yet unmatched pairs. 103624 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:5,416,660
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 350869 as yet unmatched pairs. 100997 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:7,312,055
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 349860 as yet unmatched pairs. 99988 records in RAM.
INFO 2026-06-08 09:05:24 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:7,576,585
INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 346762 as yet unmatched pairs. 96883 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:8,289,753
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 343797 as yet unmatched pairs. 93917 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 2s. Last read position: chr17:16,382,292
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 342185 as yet unmatched pairs. 92304 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:18,208,278
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 339176 as yet unmatched pairs. 89295 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:22,204,397
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 336866 as yet unmatched pairs. 86984 records in RAM.
INFO 2026-06-08 09:05:33 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:28,699,829
INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 334658 as yet unmatched pairs. 84775 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:29,571,693
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 332296 as yet unmatched pairs. 82413 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:32,207,017
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 330232 as yet unmatched pairs. 80349 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:36,167,605
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 327939 as yet unmatched pairs. 78056 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:37,585,326
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 326718 as yet unmatched pairs. 76835 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:38,190,979
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 326253 as yet unmatched pairs. 76370 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 2s. Last read position: chr17:38,850,184
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 328805 as yet unmatched pairs. 78921 records in RAM.
INFO 2026-06-08 09:05:45 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr17:39,700,201
INFO 2026-06-08 09:05:45 MarkDuplicates Tracking 323186 as yet unmatched pairs. 73302 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:39,716,588
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 323791 as yet unmatched pairs. 73907 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:39,745,310
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 316682 as yet unmatched pairs. 66787 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:40,496,253
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 314871 as yet unmatched pairs. 64976 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:41,527,903
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 314716 as yet unmatched pairs. 64820 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:41,624,078
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 310543 as yet unmatched pairs. 60644 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:42,000,534
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 305930 as yet unmatched pairs. 56031 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 125s. Last read position: chr17:42,998,743
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 304750 as yet unmatched pairs. 54851 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr17:44,349,538
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 302439 as yet unmatched pairs. 52540 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 2s. Last read position: chr17:45,518,928
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 298749 as yet unmatched pairs. 48844 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr17:47,664,217
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 297405 as yet unmatched pairs. 47500 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,064,563
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 295690 as yet unmatched pairs. 45781 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,018
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 293364 as yet unmatched pairs. 43455 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,675,674
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 289623 as yet unmatched pairs. 39714 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:57,006,204
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 287329 as yet unmatched pairs. 37420 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr17:59,663,974
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 285786 as yet unmatched pairs. 35877 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:59,912,907
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 282262 as yet unmatched pairs. 32353 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr17:63,550,684
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 279979 as yet unmatched pairs. 30063 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr17:64,805,054
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 277673 as yet unmatched pairs. 27757 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 2s. Last read position: chr17:68,527,839
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 277112 as yet unmatched pairs. 27187 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:74,866,920
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 273188 as yet unmatched pairs. 23260 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr17:75,624,771
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 270543 as yet unmatched pairs. 20615 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:75,891,040
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 267882 as yet unmatched pairs. 17950 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:77,209,403
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 265208 as yet unmatched pairs. 15272 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:78,971,964
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 263704 as yet unmatched pairs. 13766 records in RAM.
INFO 2026-06-08 09:08:29 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:80,339,458
INFO 2026-06-08 09:08:29 MarkDuplicates Tracking 260621 as yet unmatched pairs. 10681 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:81,510,740
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 258994 as yet unmatched pairs. 9054 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:81,847,252
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 256417 as yet unmatched pairs. 6476 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:82,087,756
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 252590 as yet unmatched pairs. 2648 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr18:346,518
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 249859 as yet unmatched pairs. 15259 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr18:8,831,670
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 248041 as yet unmatched pairs. 13438 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 2s. Last read position: chr18:21,765,797
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 245708 as yet unmatched pairs. 11100 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr18:36,126,237
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 243623 as yet unmatched pairs. 9012 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr18:48,029,407
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 241235 as yet unmatched pairs. 6624 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 2s. Last read position: chr18:57,611,674
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 239104 as yet unmatched pairs. 4491 records in RAM.
INFO 2026-06-08 09:08:48 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 2s. Last read position: chr18:62,523,383
INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 236565 as yet unmatched pairs. 1952 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 2s. Last read position: chr19:572,619
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 238166 as yet unmatched pairs. 105907 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr19:1,062,209
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 231460 as yet unmatched pairs. 99200 records in RAM.
INFO 2026-06-08 09:08:54 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:1,440,177
INFO 2026-06-08 09:08:54 MarkDuplicates Tracking 229617 as yet unmatched pairs. 97356 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr19:2,121,034
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 226058 as yet unmatched pairs. 93797 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:3,534,834
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 223510 as yet unmatched pairs. 91248 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 2s. Last read position: chr19:4,695,482
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 220541 as yet unmatched pairs. 88277 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:5,894,803
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 218412 as yet unmatched pairs. 86148 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:7,550,570
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 215337 as yet unmatched pairs. 83072 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:9,413,624
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 212624 as yet unmatched pairs. 80359 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:10,631,923
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 210534 as yet unmatched pairs. 78269 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:11,193,860
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 207614 as yet unmatched pairs. 75349 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:12,663,438
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 205575 as yet unmatched pairs. 73310 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 2s. Last read position: chr19:13,153,257
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 203311 as yet unmatched pairs. 71046 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 2s. Last read position: chr19:14,621,557
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 200063 as yet unmatched pairs. 67798 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:15,249,182
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 198839 as yet unmatched pairs. 66574 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 2s. Last read position: chr19:16,101,320
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 195176 as yet unmatched pairs. 62911 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:17,727,405
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 192497 as yet unmatched pairs. 60230 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:18,388,639
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 191718 as yet unmatched pairs. 59451 records in RAM.
INFO 2026-06-08 09:09:22 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:18,995,193
INFO 2026-06-08 09:09:22 MarkDuplicates Tracking 187112 as yet unmatched pairs. 54845 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr19:23,360,101
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 184736 as yet unmatched pairs. 52467 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:34,377,573
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 183273 as yet unmatched pairs. 51003 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:35,250,368
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 180917 as yet unmatched pairs. 48647 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:35,768,198
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 177325 as yet unmatched pairs. 45054 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:38,374,942
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 175211 as yet unmatched pairs. 42939 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:39,376,438
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 172311 as yet unmatched pairs. 40039 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 2s. Last read position: chr19:39,943,415
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 170717 as yet unmatched pairs. 38445 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:41,292,346
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 167738 as yet unmatched pairs. 35466 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:42,273,986
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 165159 as yet unmatched pairs. 32887 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:43,574,899
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 162182 as yet unmatched pairs. 29898 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:45,392,293
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 159544 as yet unmatched pairs. 27260 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:46,608,282
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 157295 as yet unmatched pairs. 25011 records in RAM.
INFO 2026-06-08 09:09:43 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:48,121,189
INFO 2026-06-08 09:09:43 MarkDuplicates Tracking 154360 as yet unmatched pairs. 22075 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:48,969,235
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 152213 as yet unmatched pairs. 19928 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 2s. Last read position: chr19:49,497,546
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 153713 as yet unmatched pairs. 21428 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:49,858,577
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 147442 as yet unmatched pairs. 15157 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:52,034,519
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 144867 as yet unmatched pairs. 12581 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:52,970,757
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 142294 as yet unmatched pairs. 10008 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:54,207,492
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 140076 as yet unmatched pairs. 7790 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 2s. Last read position: chr19:55,386,680
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 139969 as yet unmatched pairs. 7683 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:57,778,889
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 135064 as yet unmatched pairs. 2777 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:58,549,849
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 133496 as yet unmatched pairs. 1207 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr20:3,005,085
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 130406 as yet unmatched pairs. 34571 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr20:7,987,307
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 127671 as yet unmatched pairs. 31836 records in RAM.
INFO 2026-06-08 09:10:04 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr20:20,513,024
INFO 2026-06-08 09:10:04 MarkDuplicates Tracking 125812 as yet unmatched pairs. 29973 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr20:31,554,772
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 123502 as yet unmatched pairs. 27663 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr20:34,440,101
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 120611 as yet unmatched pairs. 24772 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr20:35,653,510
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 118440 as yet unmatched pairs. 22601 records in RAM.
INFO 2026-06-08 09:10:12 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 2s. Last read position: chr20:37,403,191
INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 116177 as yet unmatched pairs. 20338 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr20:44,203,034
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 113353 as yet unmatched pairs. 17513 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr20:45,894,065
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 111498 as yet unmatched pairs. 15658 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr20:49,223,335
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 108744 as yet unmatched pairs. 12903 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr20:53,582,191
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 106542 as yet unmatched pairs. 10694 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr20:58,996,662
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 104146 as yet unmatched pairs. 8293 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr20:62,328,373
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 102011 as yet unmatched pairs. 6158 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr20:63,520,781
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 99010 as yet unmatched pairs. 3157 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr20:64,290,664
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 95857 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 09:10:26 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr21:8,390,892
INFO 2026-06-08 09:10:26 MarkDuplicates Tracking 94536 as yet unmatched pairs. 15612 records in RAM.
INFO 2026-06-08 09:10:28 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr21:14,967,859
INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 93138 as yet unmatched pairs. 14210 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr21:31,672,291
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 90911 as yet unmatched pairs. 11982 records in RAM.
INFO 2026-06-08 09:10:31 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr21:33,576,399
INFO 2026-06-08 09:10:31 MarkDuplicates Tracking 88577 as yet unmatched pairs. 9648 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr21:37,512,458
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 86466 as yet unmatched pairs. 7537 records in RAM.
INFO 2026-06-08 09:10:34 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr21:41,743,901
INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 84067 as yet unmatched pairs. 5137 records in RAM.
INFO 2026-06-08 09:10:36 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 2s. Last read position: chr21:44,306,688
INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 82266 as yet unmatched pairs. 3336 records in RAM.
INFO 2026-06-08 09:10:38 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr21:46,661,895
INFO 2026-06-08 09:10:38 MarkDuplicates Tracking 79064 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr22:20,132,019
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 76677 as yet unmatched pairs. 35544 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr22:23,253,856
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 74393 as yet unmatched pairs. 33260 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr22:24,648,187
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 71348 as yet unmatched pairs. 30215 records in RAM.
INFO 2026-06-08 09:10:44 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr22:29,296,189
INFO 2026-06-08 09:10:44 MarkDuplicates Tracking 69801 as yet unmatched pairs. 28668 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr22:30,490,161
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 66725 as yet unmatched pairs. 25592 records in RAM.
INFO 2026-06-08 09:10:47 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr22:35,744,170
INFO 2026-06-08 09:10:47 MarkDuplicates Tracking 64500 as yet unmatched pairs. 23367 records in RAM.
INFO 2026-06-08 09:10:50 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 2s. Last read position: chr22:36,322,437
INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 63057 as yet unmatched pairs. 21924 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr22:37,855,574
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 60309 as yet unmatched pairs. 19176 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr22:38,739,724
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 56980 as yet unmatched pairs. 15847 records in RAM.
INFO 2026-06-08 09:10:54 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr22:40,552,217
INFO 2026-06-08 09:10:54 MarkDuplicates Tracking 54205 as yet unmatched pairs. 13072 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr22:41,674,936
INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 52767 as yet unmatched pairs. 11623 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr22:45,176,032
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 49692 as yet unmatched pairs. 8545 records in RAM.
INFO 2026-06-08 09:10:59 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr22:46,363,129
INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 46886 as yet unmatched pairs. 5739 records in RAM.
INFO 2026-06-08 09:11:01 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr22:50,280,903
INFO 2026-06-08 09:11:01 MarkDuplicates Tracking 44407 as yet unmatched pairs. 3259 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr22:50,582,580
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 41564 as yet unmatched pairs. 415 records in RAM.
INFO 2026-06-08 09:11:04 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 2s. Last read position: chrX:10,566,872
INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 39242 as yet unmatched pairs. 33837 records in RAM.
INFO 2026-06-08 09:11:06 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chrX:23,783,815
INFO 2026-06-08 09:11:06 MarkDuplicates Tracking 37233 as yet unmatched pairs. 31820 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chrX:41,162,808
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 35120 as yet unmatched pairs. 29705 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chrX:47,056,115
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 32744 as yet unmatched pairs. 27329 records in RAM.
INFO 2026-06-08 09:11:11 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 2s. Last read position: chrX:48,904,810
INFO 2026-06-08 09:11:11 MarkDuplicates Tracking 30728 as yet unmatched pairs. 25313 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chrX:53,393,457
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 27774 as yet unmatched pairs. 22359 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 2s. Last read position: chrX:56,564,352
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 25824 as yet unmatched pairs. 20409 records in RAM.
INFO 2026-06-08 09:11:16 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chrX:71,377,098
INFO 2026-06-08 09:11:16 MarkDuplicates Tracking 23516 as yet unmatched pairs. 18101 records in RAM.
INFO 2026-06-08 09:11:17 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chrX:77,633,247
INFO 2026-06-08 09:11:17 MarkDuplicates Tracking 21405 as yet unmatched pairs. 15990 records in RAM.
INFO 2026-06-08 09:11:19 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chrX:100,156,208
INFO 2026-06-08 09:11:19 MarkDuplicates Tracking 19311 as yet unmatched pairs. 13896 records in RAM.
INFO 2026-06-08 09:11:20 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chrX:108,665,560
INFO 2026-06-08 09:11:20 MarkDuplicates Tracking 17221 as yet unmatched pairs. 11806 records in RAM.
INFO 2026-06-08 09:11:22 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chrX:123,888,656
INFO 2026-06-08 09:11:22 MarkDuplicates Tracking 15152 as yet unmatched pairs. 9737 records in RAM.
INFO 2026-06-08 09:11:23 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:139,798,263
INFO 2026-06-08 09:11:23 MarkDuplicates Tracking 13110 as yet unmatched pairs. 7695 records in RAM.
INFO 2026-06-08 09:11:25 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chrX:153,694,532
INFO 2026-06-08 09:11:25 MarkDuplicates Tracking 11409 as yet unmatched pairs. 5994 records in RAM.
INFO 2026-06-08 09:11:27 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chrX:154,353,146
INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 8240 as yet unmatched pairs. 2825 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chrX:154,768,418
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 6129 as yet unmatched pairs. 714 records in RAM.
INFO 2026-06-08 09:11:29 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: GL000194.1:55,524
INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 3964 as yet unmatched pairs. 13 records in RAM.
INFO 2026-06-08 09:11:30 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: KI270711.1:22,991
INFO 2026-06-08 09:11:30 MarkDuplicates Tracking 2380 as yet unmatched pairs. 178 records in RAM.
INFO 2026-06-08 09:11:32 MarkDuplicates Read 629982833 records. 0 pairs never matched.
INFO 2026-06-08 09:12:16 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140496; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:12:16 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:12:21 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:12:21 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:12:56 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 09:12:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,111
INFO 2026-06-08 09:13:13 OpticalDuplicateFinder Large duplicate set. size = 1417
INFO 2026-06-08 09:13:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,700
INFO 2026-06-08 09:13:59 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:13:59 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:15:12 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:15:18 MarkDuplicates After generateDuplicateIndexes freeMemory: 203994776; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:15:18 MarkDuplicates Marking 383273197 records as duplicates.
INFO 2026-06-08 09:15:18 MarkDuplicates Found 12123727 optical duplicate clusters.
INFO 2026-06-08 09:15:18 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:15:36 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:21,757,754
INFO 2026-06-08 09:15:55 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 18s. Last read position: chr1:40,271,942
INFO 2026-06-08 09:16:11 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:52s. Time for last 10,000,000: 16s. Last read position: chr1:93,346,723
INFO 2026-06-08 09:16:27 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:08s. Time for last 10,000,000: 15s. Last read position: chr1:149,813,364
INFO 2026-06-08 09:16:43 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:24s. Time for last 10,000,000: 16s. Last read position: chr1:162,522,428
INFO 2026-06-08 09:16:59 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:41s. Time for last 10,000,000: 16s. Last read position: chr1:222,687,640
INFO 2026-06-08 09:17:16 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:57s. Time for last 10,000,000: 16s. Last read position: chr2:28,776,892
INFO 2026-06-08 09:17:32 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:13s. Time for last 10,000,000: 15s. Last read position: chr2:65,069,700
INFO 2026-06-08 09:17:50 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:31s. Time for last 10,000,000: 17s. Last read position: chr2:113,183,405
INFO 2026-06-08 09:18:07 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:48s. Time for last 10,000,000: 17s. Last read position: chr2:208,248,538
INFO 2026-06-08 09:18:24 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:05s. Time for last 10,000,000: 17s. Last read position: chr3:12,941,668
INFO 2026-06-08 09:18:42 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:23s. Time for last 10,000,000: 17s. Last read position: chr3:49,687,363
INFO 2026-06-08 09:18:58 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:40s. Time for last 10,000,000: 16s. Last read position: chr3:128,899,421
INFO 2026-06-08 09:19:16 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:57s. Time for last 10,000,000: 17s. Last read position: chr3:196,827,227
INFO 2026-06-08 09:19:32 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:13s. Time for last 10,000,000: 16s. Last read position: chr4:48,897,824
INFO 2026-06-08 09:19:48 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:29s. Time for last 10,000,000: 16s. Last read position: chr4:169,992,258
INFO 2026-06-08 09:20:05 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:46s. Time for last 10,000,000: 16s. Last read position: chr5:77,582,402
INFO 2026-06-08 09:20:21 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:02s. Time for last 10,000,000: 16s. Last read position: chr5:147,831,539
INFO 2026-06-08 09:20:38 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:19s. Time for last 10,000,000: 16s. Last read position: chr5:181,243,697
INFO 2026-06-08 09:20:56 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:37s. Time for last 10,000,000: 17s. Last read position: chr6:33,279,721
INFO 2026-06-08 09:21:12 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:53s. Time for last 10,000,000: 16s. Last read position: chr6:87,636,418
INFO 2026-06-08 09:21:28 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:09s. Time for last 10,000,000: 16s. Last read position: chr7:20,986
INFO 2026-06-08 09:21:45 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:26s. Time for last 10,000,000: 16s. Last read position: chr7:73,297,028
INFO 2026-06-08 09:22:01 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:42s. Time for last 10,000,000: 16s. Last read position: chr7:101,159,063
INFO 2026-06-08 09:22:17 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:58s. Time for last 10,000,000: 16s. Last read position: chr7:152,315,317
INFO 2026-06-08 09:22:33 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:15s. Time for last 10,000,000: 16s. Last read position: chr8:56,074,393
INFO 2026-06-08 09:22:50 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:31s. Time for last 10,000,000: 16s. Last read position: chr8:125,007,447
INFO 2026-06-08 09:23:06 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:47s. Time for last 10,000,000: 16s. Last read position: chr8:143,866,414
INFO 2026-06-08 09:23:23 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:04s. Time for last 10,000,000: 16s. Last read position: chr9:86,282,381
INFO 2026-06-08 09:23:39 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:20s. Time for last 10,000,000: 16s. Last read position: chr10:5,098,846
INFO 2026-06-08 09:23:55 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:36s. Time for last 10,000,000: 16s. Last read position: chr10:73,160,526
INFO 2026-06-08 09:24:13 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:54s. Time for last 10,000,000: 17s. Last read position: chr11:1,288,668
INFO 2026-06-08 09:24:29 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:10s. Time for last 10,000,000: 16s. Last read position: chr11:47,779,169
INFO 2026-06-08 09:24:47 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:28s. Time for last 10,000,000: 17s. Last read position: chr11:65,780,531
INFO 2026-06-08 09:25:06 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:47s. Time for last 10,000,000: 19s. Last read position: chr11:108,173,804
INFO 2026-06-08 09:25:22 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:03s. Time for last 10,000,000: 16s. Last read position: chr12:6,916,496
INFO 2026-06-08 09:25:38 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 16s. Last read position: chr12:52,904,888
INFO 2026-06-08 09:25:55 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:36s. Time for last 10,000,000: 16s. Last read position: chr12:76,060,138
INFO 2026-06-08 09:26:11 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:52s. Time for last 10,000,000: 16s. Last read position: chr12:130,872,115
INFO 2026-06-08 09:26:27 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:08s. Time for last 10,000,000: 16s. Last read position: chr13:108,210,710
INFO 2026-06-08 09:26:44 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 16s. Last read position: chr14:64,126,732
INFO 2026-06-08 09:27:00 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:41s. Time for last 10,000,000: 16s. Last read position: chr15:24,962,161
INFO 2026-06-08 09:27:17 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:58s. Time for last 10,000,000: 16s. Last read position: chr15:56,961,369
INFO 2026-06-08 09:27:33 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:14s. Time for last 10,000,000: 16s. Last read position: chr15:75,552,249
INFO 2026-06-08 09:27:49 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:30s. Time for last 10,000,000: 16s. Last read position: chr16:2,234,251
INFO 2026-06-08 09:28:05 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:46s. Time for last 10,000,000: 16s. Last read position: chr16:21,837,483
INFO 2026-06-08 09:28:21 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:02s. Time for last 10,000,000: 16s. Last read position: chr16:56,467,905
INFO 2026-06-08 09:28:38 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:19s. Time for last 10,000,000: 16s. Last read position: chr17:747,912
INFO 2026-06-08 09:28:56 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:37s. Time for last 10,000,000: 18s. Last read position: chr17:28,699,829
INFO 2026-06-08 09:29:12 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:53s. Time for last 10,000,000: 16s. Last read position: chr17:40,496,253
INFO 2026-06-08 09:29:28 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:10s. Time for last 10,000,000: 16s. Last read position: chr17:50,675,674
INFO 2026-06-08 09:29:45 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:26s. Time for last 10,000,000: 16s. Last read position: chr17:77,209,403
INFO 2026-06-08 09:30:01 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:42s. Time for last 10,000,000: 16s. Last read position: chr18:48,029,407
INFO 2026-06-08 09:30:17 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:58s. Time for last 10,000,000: 16s. Last read position: chr19:7,550,570
INFO 2026-06-08 09:30:34 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:15s. Time for last 10,000,000: 16s. Last read position: chr19:18,388,639
INFO 2026-06-08 09:30:50 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:31s. Time for last 10,000,000: 16s. Last read position: chr19:42,273,986
INFO 2026-06-08 09:31:06 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:47s. Time for last 10,000,000: 16s. Last read position: chr19:54,207,492
INFO 2026-06-08 09:31:22 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:03s. Time for last 10,000,000: 16s. Last read position: chr20:37,403,191
INFO 2026-06-08 09:31:38 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:19s. Time for last 10,000,000: 15s. Last read position: chr21:14,967,859
INFO 2026-06-08 09:31:54 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:35s. Time for last 10,000,000: 16s. Last read position: chr22:29,296,189
INFO 2026-06-08 09:32:10 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:52s. Time for last 10,000,000: 16s. Last read position: chr22:50,280,903
INFO 2026-06-08 09:32:27 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:08s. Time for last 10,000,000: 16s. Last read position: chrX:77,633,247
INFO 2026-06-08 09:32:42 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:24s. Time for last 10,000,000: 15s. Last read position: */*
INFO 2026-06-08 09:32:50 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:32:50 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:32:50 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:32:50 MarkDuplicates Before output close freeMemory: 203968352; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:32:50 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:32:50 MarkDuplicates After output close freeMemory: 104203376; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:32:50 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.08 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory