File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/790972bde0a47236d261936df3e301/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/a893831c44acf600906427c76ac900/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0a96b55d84d45d8460e84d472820bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/790972bde0a47236d261936df3e301/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/3fd193d6e774e6f2ba9e677370f6ce/BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/790972bde0a47236d261936df3e301/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 32782985
[W::hts_idx_load3] The index file is older than the data file: BVT_FFPE_TRNA_bld_01_A23WKFTLT4_3.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	32782985
Known Splicing Events:	32397633
Partial Novel Splicing Events:	192690
Novel Splicing Events:	167899
Filtered Splicing Events:	24763

Total splicing  Junctions:	190418
Known Splicing Junctions:	164192
Partial Novel Splicing Junctions:	15093
Novel Splicing Junctions:	11133

===================================================================
Create BED file ...
Create Interact file ...