AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 120
Pass (FILTER=PASS): 7 (5.8%)
Fail (FILTER=FAIL): 113 (94.2%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 3
All 3 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 20
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 13
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 13
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 10
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 10
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 10
confidence_below_min(medium<high): 7
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 5
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 3
total_reads_below_min(6.0<8.0): 1
total_reads_below_min(4.0<8.0): 1
total_reads_below_min(3.0<8.0): 1
Breakdown by confidence:
high: 7 pass, 3 fail (total: 10)
low: 0 pass, 43 fail (total: 43)
medium: 0 pass, 67 fail (total: 67)
Arriba filter: 120 rows -> 7 PASS; wrote BVT_FFPE_TRNA_utn_09_A23WKFTLT4_3.arriba.fusions.filtered.tsv and BVT_FFPE_TRNA_utn_09_A23WKFTLT4_3.arriba.fusions.filtered_pass_only.tsv
Summary written to: BVT_FFPE_TRNA_utn_09_A23WKFTLT4_3.arriba.fusions.filter_summary.txt