File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/78be8727c5de9eee00616d38035910/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_3)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/799370b01fa8b9cc594ab89cd330f0/BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_3
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/78be8727c5de9eee00616d38035910/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/78be8727c5de9eee00616d38035910/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/87f64c4db418cfab2bb8facaafb616/BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_3.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_3/abundance.h5
Successfully converted BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_3/abundance.h5 to BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_3_kallisto_mqc.tsv
  Sample: BVT_FFPE_TRNA_bst_01_02_A23WKFTLT4_3
  Mean Fragment Length: 119.3 bp
  Median Fragment Length: 113.0 bp
  pct_mito_est_counts: 0.004%
  pct_ribo_est_counts: 0.96%
  pct_hk_est_counts: 0.475%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.007%
  pct_ribo_tpm: 2.96%
  pct_hk_tpm: 0.741%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.367%