#!/bin/bash -euo pipefail
cat BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L001_R1_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L002_R1_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L003_R1_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L004_R1_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L005_R1_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L006_R1_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L007_R1_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L008_R1_001.fastq.gz > BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_R1.fastq.gz
cat BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L001_R2_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L002_R2_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L003_R2_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L004_R2_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L005_R2_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L006_R2_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L007_R2_001.fastq.gz BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_S55_L008_R2_001.fastq.gz > BVT_FFPE_TRNA_crv_01_A23WKFTLT4_2_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS