File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/69a134d3168a191424be63eed84bd2/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/9b496ca607649cc7137dba0aeafe1e/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/69a134d3168a191424be63eed84bd2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/69a134d3168a191424be63eed84bd2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/3c345706c5f3161231da47da782b00/BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3/abundance.h5
Successfully converted BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3/abundance.h5 to BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3_kallisto_mqc.tsv
  Sample: BVT_FFPE_TRNA_bst_01_03_A23WKFTLT4_3
  Mean Fragment Length: 116.0 bp
  Median Fragment Length: 110.0 bp
  pct_mito_est_counts: 0.005%
  pct_ribo_est_counts: 0.999%
  pct_hk_est_counts: 0.465%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.009%
  pct_ribo_tpm: 3.083%
  pct_hk_tpm: 0.724%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.01%