File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/276a908ac7e4f6c920febf30a9c6dc/.command.log
Size
6.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/3cc07a3bc017f1c7915e656d107568/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-13dfb8f7-c999-4ef0-9260-22ba79cf647d/12/67abb88ebf714ffff6a1edb5a607f5/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/276a908ac7e4f6c920febf30a9c6dc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/276a908ac7e4f6c920febf30a9c6dc/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/3058cd9ce766598a1fd85732431e01/BVT_FFPE_TRNA_bst_01_01_A23WKFTLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
NARS2--GAB2
starfusion
arriba
EXOC2--EPHA5
starfusion
arriba
RIC1--FMNL1
starfusion
arriba
MSI2--CLTC
starfusion
arriba
C22orf39--MYO18B-AS1
starfusion
arriba
ZSCAN22--WWC3
starfusion
arriba
AC092070.2--MAN2B1
starfusion
arriba
SHMT2--RACGAP1
starfusion
arriba
GUSB--NAIP
starfusion
DAD1--RNF212B
starfusion
DOK7--MICB
arriba
BMP2K--BMP2K
arriba
TVP23C--CDRT4
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
MYLIP--MTCO3P28
arriba
MYLIP--AC104689.1
arriba
ZNF525--AC007786.2
arriba
ZNF525--AC007786.3
arriba
AC092807.3--DDAH1
arriba
HIRA--MYO18B-AS1
arriba
EXOC2--EPHA5-AS1
arriba
DNMT1--CASP14
arriba
DNMT1--OR1I1
arriba
MAPK13--ZBTB9
arriba
MAPK13--GGNBP1
arriba

  0%|          | 0/27 [00:00<?, ?it/s]
Processing NARS2--GAB2:   0%|          | 0/27 [00:00<?, ?it/s]
Processing NARS2--GAB2:   4%|▎         | 1/27 [00:00<00:02,  9.25it/s]
Processing EXOC2--EPHA5:   4%|▎         | 1/27 [00:00<00:02,  9.25it/s]
Processing EXOC2--EPHA5:   7%|▋         | 2/27 [00:00<00:02,  9.47it/s]
Processing RIC1--FMNL1:   7%|▋         | 2/27 [00:00<00:02,  9.47it/s] 
Processing RIC1--FMNL1:  11%|█         | 3/27 [00:00<00:02,  9.55it/s]
Processing MSI2--CLTC:  11%|█         | 3/27 [00:00<00:02,  9.55it/s] 
Processing MSI2--CLTC:  15%|█▍        | 4/27 [00:00<00:02,  9.59it/s]
Processing C22orf39--MYO18B-AS1:  15%|█▍        | 4/27 [00:00<00:02,  9.59it/s]
Processing C22orf39--MYO18B-AS1:  19%|█▊        | 5/27 [00:00<00:02,  9.61it/s]
Processing ZSCAN22--WWC3:  19%|█▊        | 5/27 [00:00<00:02,  9.61it/s]       
Processing ZSCAN22--WWC3:  22%|██▏       | 6/27 [00:00<00:02,  9.62it/s]
Processing AC092070.2--MAN2B1:  22%|██▏       | 6/27 [00:00<00:02,  9.62it/s]
Processing AC092070.2--MAN2B1:  26%|██▌       | 7/27 [00:00<00:02,  9.63it/s]
Processing SHMT2--RACGAP1:  26%|██▌       | 7/27 [00:00<00:02,  9.63it/s]    
Processing SHMT2--RACGAP1:  30%|██▉       | 8/27 [00:00<00:01,  9.63it/s]
Processing GUSB--NAIP:  30%|██▉       | 8/27 [00:00<00:01,  9.63it/s]    
Processing GUSB--NAIP:  33%|███▎      | 9/27 [00:00<00:01,  9.64it/s]
Processing DAD1--RNF212B:  33%|███▎      | 9/27 [00:00<00:01,  9.64it/s]
Processing DAD1--RNF212B:  37%|███▋      | 10/27 [00:01<00:01,  9.64it/s]
Processing DOK7--MICB:  37%|███▋      | 10/27 [00:01<00:01,  9.64it/s]   
Processing DOK7--MICB:  41%|████      | 11/27 [00:01<00:01,  9.64it/s]
Processing BMP2K--BMP2K:  41%|████      | 11/27 [00:01<00:01,  9.64it/s]
Processing BMP2K--BMP2K:  44%|████▍     | 12/27 [00:01<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  44%|████▍     | 12/27 [00:01<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  48%|████▊     | 13/27 [00:01<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC1:  48%|████▊     | 13/27 [00:01<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC1:  52%|█████▏    | 14/27 [00:01<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC2:  52%|█████▏    | 14/27 [00:01<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC2:  56%|█████▌    | 15/27 [00:01<00:01,  9.64it/s]
Processing PCDHA4--PCDHA13:  56%|█████▌    | 15/27 [00:01<00:01,  9.64it/s]
Processing PCDHA4--PCDHA13:  59%|█████▉    | 16/27 [00:01<00:01,  9.64it/s]
Processing MYLIP--MTCO3P28:  59%|█████▉    | 16/27 [00:01<00:01,  9.64it/s]
Processing MYLIP--MTCO3P28:  63%|██████▎   | 17/27 [00:01<00:01,  9.64it/s]
Processing MYLIP--AC104689.1:  63%|██████▎   | 17/27 [00:01<00:01,  9.64it/s]
Processing MYLIP--AC104689.1:  67%|██████▋   | 18/27 [00:01<00:00,  9.64it/s]
Processing ZNF525--AC007786.2:  67%|██████▋   | 18/27 [00:01<00:00,  9.64it/s]
Processing ZNF525--AC007786.2:  70%|███████   | 19/27 [00:01<00:00,  9.64it/s]
Processing ZNF525--AC007786.3:  70%|███████   | 19/27 [00:01<00:00,  9.64it/s]
Processing ZNF525--AC007786.3:  74%|███████▍  | 20/27 [00:02<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  74%|███████▍  | 20/27 [00:02<00:00,  9.64it/s] 
Processing AC092807.3--DDAH1:  78%|███████▊  | 21/27 [00:02<00:00,  9.64it/s]
Processing HIRA--MYO18B-AS1:  78%|███████▊  | 21/27 [00:02<00:00,  9.64it/s] 
Processing HIRA--MYO18B-AS1:  81%|████████▏ | 22/27 [00:02<00:00,  9.64it/s]
Processing EXOC2--EPHA5-AS1:  81%|████████▏ | 22/27 [00:02<00:00,  9.64it/s]
Processing EXOC2--EPHA5-AS1:  85%|████████▌ | 23/27 [00:02<00:00,  9.64it/s]
Processing DNMT1--CASP14:  85%|████████▌ | 23/27 [00:02<00:00,  9.64it/s]   
Processing DNMT1--CASP14:  89%|████████▉ | 24/27 [00:02<00:00,  9.64it/s]
Processing DNMT1--OR1I1:  89%|████████▉ | 24/27 [00:02<00:00,  9.64it/s] 
Processing DNMT1--OR1I1:  93%|█████████▎| 25/27 [00:02<00:00,  9.64it/s]
Processing MAPK13--ZBTB9:  93%|█████████▎| 25/27 [00:02<00:00,  9.64it/s]
Processing MAPK13--ZBTB9:  96%|█████████▋| 26/27 [00:02<00:00,  9.64it/s]
Processing MAPK13--GGNBP1:  96%|█████████▋| 26/27 [00:02<00:00,  9.64it/s]
Processing MAPK13--GGNBP1: 100%|██████████| 27/27 [00:02<00:00,  9.64it/s]
Processing MAPK13--GGNBP1: 100%|██████████| 27/27 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory