Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/03d6dc59d55cd47ebc0f7b12db3a8e/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_2.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/bbeb0ef896fc81e3d3c247e422279a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/bbeb0ef896fc81e3d3c247e422279a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/9735ff75f84a2629b0528a1e06775c/BVT_FFPE_TRNA_brn_01_A23WKFTLT4_2
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: BVT_FFPE_TRNA_brn_01_A23WKFTLT4_2/abundance.h5
Successfully converted BVT_FFPE_TRNA_brn_01_A23WKFTLT4_2/abundance.h5 to BVT_FFPE_TRNA_brn_01_A23WKFTLT4_2_kallisto_mqc.tsv
  Sample: BVT_FFPE_TRNA_brn_01_A23WKFTLT4_2
  Mean Fragment Length: 122.4 bp
  Median Fragment Length: 116.0 bp
  pct_mito_est_counts: 0.002%
  pct_ribo_est_counts: 0.742%
  pct_hk_est_counts: 0.425%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.004%
  pct_ribo_tpm: 2.406%
  pct_hk_tpm: 0.677%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.386%