File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0014_0015/A23MVY2LT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0014_exp0015-2cae617
- Published
- May 16, 2026 11:09 AM
Content
View in new tab| sample_id | TOTAL_READS | EXPECTED_DISTINCT | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | IS_CONTAMINATED | CONTAMINATION_PCT | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | 9999000000.0 | 493532943.0 | 512573856.0 | 0.005491 | 0.388855 | 313257078.0 | 0.943123 | 0.975739 | 0.047892 | 0.024261 | 295440108.0 | 150143084.0 | 15002380.0 | 3733130.0 | 685.333758 | 274.0 | 0.713192 | 0.615194 | 0.974315 | 0.0 | Yes | 62.22 | 188.5 | 171.0 | 0.01 | 1.69 | 0.76 | 0.0 | 0.02 | 4.97 | 1.08 | 0.0 | 354 | 1022.177744 | 0.391002 | 0.0 | 97.46249999999999 | 90.62413812422263 | 96.08 | 246247376.0 | 29.5777 | 0.973399 | 70181275242.0 | 512573856.0 | 0.547517 | 98.56009432962855 | 32.50729928948392 | |||||||||
| NTC_0001_0001_A23MVY2LT4_1 | 9999000000.0 | 1993.0 | 1682.0 | 0.626635 | 0.148633 | 1432.0 | 0.043994 | 0.185792 | 0.219972 | 0.814208 | 63.0 | 34.0 | 315.0 | 149.0 | 9.2e-05 | 0.0 | 0.0 | 0.0 | 0.93204 | 0.0 | Skipped | N/A | 81.2 | 72.0 | 0.0 | 3.8 | 3.8 | 0.0 | 0.0 | 9.89 | 9.89 | 0.0 | 32 | 35.04918 | 0.398089 | 0.3594 | 33.7866 | 2.8825205295793532 | 9.39 | 79.0 | 44.029 | 0.885273 | 161943.0 | 1682.0 | 0.712677 | 2.4798018517426432 | 50.10025358259126 |
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