File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0014_0015/A23MVY2LT4/nfcore_rnafusion__2cae617--20260515-145204/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 2.7 KB
- Workflow Run
- dev_rna_exp0014_exp0015-2cae617
- Published
- May 16, 2026 11:10 AM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 77.019 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 94.2469 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 90.8136 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 9488.483283338 | bclconvert | |
| NTC_0001_0001_A23MVY2LT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 33914 | bclconvert |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 260031131 | bclconvert |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 512573856.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.943123 | seqtools |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.975739 | seqtools |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.047892 | seqtools |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.024261 | seqtools |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 295440108.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 150143084.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 15002380.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 3733130.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 246247376.0 | star |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.005491 | star |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 171.0 | kallisto |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.02 | kallisto |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 4.97 | kallisto |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 62.22 | contamination |
| NTC_0001_0001_A23MVY2LT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 1682.0 | seqtools |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 52 | fusion |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 52 | fusion |
28 rows