{ "source_file": "multiqc_general_stats.txt", "total_samples": 480, "metrics": [ "Sample", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct", "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped", "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean", "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median", "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30", "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature", "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc", "STAR_mqc-generalstats-star-uniquely_mapped_percent", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias", "fastp_mqc-generalstats-fastp-pct_adapter", "fastp_mqc-generalstats-fastp-pct_duplication", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts", "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm", "fastp_mqc-generalstats-fastp-pct_surviving", "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc", "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads", "STAR_mqc-generalstats-star-uniquely_mapped", "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length", "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length", "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates", "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates", "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails", "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails", "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences", "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads", "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads", "fastp_mqc-generalstats-fastp-after_filtering_gc_content", "fastp_mqc-generalstats-fastp-after_filtering_q30_bases", "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads", "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length", "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length", "Kallisto_mqc-generalstats-kallisto-fragment_length", "Kallisto_mqc-generalstats-kallisto-percent_aligned", "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads", "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent" ], "samples": [ { "Sample": "659_6i-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974429, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9078, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007169, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 137.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 131, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975565, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.627422, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.008, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.017, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.569, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 356783159, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.24, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 63.14957426506653, "fastp_mqc-generalstats-fastp-pct_duplication": 44.2968, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.391, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.615, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.221, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.762, "fastp_mqc-generalstats-fastp-pct_surviving": 98.45613266730075, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 369722048, "STAR_mqc-generalstats-star-uniquely_mapped": 176063788, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.696242, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.076852, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.904136, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 218.676205, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 111, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.521597, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.064693, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.935307, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4387071, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 63426395, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10714150, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 126048684, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 122711241, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.622924, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 139413426, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.537661, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 46200464259, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 369722048, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.56889517955341 }, { "Sample": "659_6i-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.82281874292414, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 187759786, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 137.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.36494102726597, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 179989827, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_6i-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.84060201352553, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 187759786, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_6i-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.15540680982056, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.15540680982056, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.83354891971699, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.83354891971699, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 184861024, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 184861024, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_6i-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.307819586675, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.307819586675, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.00983376821924, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.00983376821924, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 184861024, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 184861024, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_6i-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974548, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9085, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007181, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 135.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 128, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975624, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.781011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.007, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.015, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.502, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 390297955, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.17, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 64.47685666215354, "fastp_mqc-generalstats-fastp-pct_duplication": 59.277, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.436, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.691, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.355, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.163, "fastp_mqc-generalstats-fastp-pct_surviving": 98.43591236420505, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 405102760, "STAR_mqc-generalstats-star-uniquely_mapped": 192772813, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.627891, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.106513, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.861515, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 131.760265, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 63, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.391099, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.095055, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.904945, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4141264, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 39425832, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 9691029, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 78384794, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 86764997, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.775403, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 90984870, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.544812, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 50196479419, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 405102760, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.21363075874568 }, { "Sample": "659_6i-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.0281404601341, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 205769800, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 135.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.2869619550358, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 197056084, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_6i-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.8257960765017, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 205769800, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_6i-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.06072749541376, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.06072749541376, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.08112285054861, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.08112285054861, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 202551380, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 202551380, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_6i-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.21801788760955, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.21801788760955, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.03157282772334, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.03157282772334, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 202551380, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 202551380, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Dl-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973312, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8955, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008155, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 140.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 133, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974517, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.770837, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.021, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.015, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 430309860, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.31, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 60.463191291495974, "fastp_mqc-generalstats-fastp-pct_duplication": 56.0454, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.434, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.717, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.32, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.339, "fastp_mqc-generalstats-fastp-pct_surviving": 98.4320171763979, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 451678338, "STAR_mqc-generalstats-star-uniquely_mapped": 212995095, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.635336, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.096522, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.868842, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 161.299414, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 71, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.429582, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.0837, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.9163, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4249166, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 46517372, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10264871, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 92399065, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 99602868, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.764551, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 106347390, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548388, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 56780879063, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 451678338, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.71501888842299 }, { "Sample": "659_Dl-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.13744453774906, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 229436697, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 140.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.28312053787268, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 219703391, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Dl-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.99806945880015, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 229436697, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Dl-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.07431828178574, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.07431828178574, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.2047334381853, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.2047334381853, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 225839169, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 225839169, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Dl-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.22799042003206, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.22799042003206, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.23426617831352, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.23426617831352, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 225839169, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 225839169, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Dl-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973193, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9227, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008266, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 144, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 134, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974442, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.856838, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.008, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.018, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.04, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 320944920, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.24, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 58.37797736553241, "fastp_mqc-generalstats-fastp-pct_duplication": 64.4351, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.456, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.761, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.407, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.658, "fastp_mqc-generalstats-fastp-pct_surviving": 98.118526840784, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 337284940, "STAR_mqc-generalstats-star-uniquely_mapped": 158926505, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.503639, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.132462, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.812521, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 72.231219, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 30, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.214489, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.121582, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.878418, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 2867885, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 20720143, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 6712554, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 41174847, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 56455296, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.849755, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 50675435, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.552691, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 42635870190, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 337284940, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.44333040617745 }, { "Sample": "659_Dl-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.92253432684892, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 171876276, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 144, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.95350168910595, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 163504780, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Dl-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.16817194159765, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 171876276, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Dl-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.8068345239488, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.8068345239488, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.9750901579257, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.9750901579257, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 168642470, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 168642470, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Dl-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.96072378446544, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.96072378446544, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.53955932219652, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.53955932219652, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 168642470, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 168642470, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Lx-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974798, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9471, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005589, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 138.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975848, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.569695, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.008, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.018, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.017, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 459440873, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.92, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 63.49954395997476, "fastp_mqc-generalstats-fastp-pct_duplication": 38.6836, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.352, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.559, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.037, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.339, "fastp_mqc-generalstats-fastp-pct_surviving": 98.46464150341733, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 472731300, "STAR_mqc-generalstats-star-uniquely_mapped": 226722204, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.712096, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.056397, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.93071, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 346.652517, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 158, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.579266, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.043393, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.956607, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4354587, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 95997343, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11557004, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 190724878, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 197751475, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.56651, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 204924135, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.535287, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 58573251308, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 472731300, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.52260343944634 }, { "Sample": "659_Lx-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.30769821094857, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 240051298, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 138.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.21867094478407, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 232155200, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Lx-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.41816391867272, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 240051298, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Lx-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.01870700755376, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.01870700755376, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.34550095681053, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.34550095681053, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 236365650, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 236365650, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Lx-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.18111313551694, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.18111313551694, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.58622622451114, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.58622622451114, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 236365650, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 236365650, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Lx-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974771, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9523, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005454, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 139.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 131, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975816, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.681348, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.007, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.015, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.007, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 511212005, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.96, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 62.49314286523112, "fastp_mqc-generalstats-fastp-pct_duplication": 47.702299999999994, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.351, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.567, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.268, "fastp_mqc-generalstats-fastp-pct_surviving": 98.49101815211236, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 525908288, "STAR_mqc-generalstats-star-uniquely_mapped": 252337753, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.689891, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.066187, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.916894, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 280.844642, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 125, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.540849, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.052619, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.947381, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4345904, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 78245827, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11221158, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 155446647, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 134657805, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.677632, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 169536169, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.536988, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 65528247264, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 525908288, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.55596912855111 }, { "Sample": "659_Lx-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.20243432890558, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 266982867, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 139.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.21042561702316, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 258248384, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Lx-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.14301850876686, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 266982867, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Lx-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.73844080586157, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.73844080586157, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.2694756904866, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.2694756904866, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 262954144, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 262954144, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Lx-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.89624050572102, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.89624050572102, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.4031384781822, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.4031384781822, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 262954144, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 262954144, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Mt-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974247, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9213, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006706, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 151.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 142, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975311, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.578718, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.007, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.017, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.05, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 394035222, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.88, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 51.195705574969594, "fastp_mqc-generalstats-fastp-pct_duplication": 42.838300000000004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.291, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.465, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.73, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.384, "fastp_mqc-generalstats-fastp-pct_surviving": 98.542564564574, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 410870718, "STAR_mqc-generalstats-star-uniquely_mapped": 194916266, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.702346, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.066032, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.918194, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 312.735042, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 142, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.563006, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.050765, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.949235, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4329733, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 80959307, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11534912, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 160396784, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 175254736, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.574837, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 174687175, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.541057, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 53690661557, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 410870718, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.16462277738556 }, { "Sample": "659_Mt-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.02828064593348, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 208473729, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 151.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.42284481806269, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 200140971, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Mt-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.25230184848205, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 208473729, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Mt-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.06842825922678, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.06842825922678, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.06863798155646, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.06863798155646, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 205435359, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 205435359, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Mt-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.1752840902135, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.1752840902135, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.3955523132073, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.3955523132073, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 205435359, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 205435359, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Mt-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973276, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9121, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006655, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 147.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 138, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974362, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.766198, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.006, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.013, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.048, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 467015552, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.81, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 55.25877473861507, "fastp_mqc-generalstats-fastp-pct_duplication": 56.752199999999995, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.323, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.532, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.836, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.763, "fastp_mqc-generalstats-fastp-pct_surviving": 98.44048262754676, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 487609194, "STAR_mqc-generalstats-star-uniquely_mapped": 231149922, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.647195, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.093951, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.87819, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 190.097097, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 81, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.457287, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.078678, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.921322, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4405970, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 51593736, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10944439, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 102301002, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 108569758, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.761098, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 116490707, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.546408, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 62457636060, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 487609194, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.76959655347147 }, { "Sample": "659_Mt-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.35376232352957, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 247667007, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 147.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.41369232672837, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 237499060, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Mt-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.83409843562401, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 247667007, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Mt-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.53506413580874, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.53506413580874, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.42757032618518, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.42757032618518, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 243804597, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 243804597, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_Mt-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.66417177523522, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.66417177523522, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.14074989761293, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.14074989761293, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 243804597, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 243804597, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bCu-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97194, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9286, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008407, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 133.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 127, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.973384, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.833388, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.001, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.003, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.319, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 463266356, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.9, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 65.86101858050847, "fastp_mqc-generalstats-fastp-pct_duplication": 57.760999999999996, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.242, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.397, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.549, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.859, "fastp_mqc-generalstats-fastp-pct_surviving": 98.16374759044083, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 482784100, "STAR_mqc-generalstats-star-uniquely_mapped": 229086587, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.496329, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.126947, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.824633, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 115.570767, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 29, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.270278, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.117385, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.882615, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4618681, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 34727617, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10640692, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 69120750, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 84571576, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.826382, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 83820050, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.596663, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 58875373308, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 482784100, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.01618337463171 }, { "Sample": "659_bCu-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.81659919631184, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 245907533, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 133.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.14258775299352, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 234494484, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bCu-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.12745468967054, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 245907533, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bCu-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 59, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.35951999247696, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.35951999247696, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.91598774351327, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.91598774351327, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 241392050, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 241392050, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bCu-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 59, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.56791091504464, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.56791091504464, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.56179009017207, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.56179009017207, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 241392050, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 241392050, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bCu-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.971263, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9409, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008606, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 140.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.972692, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.83949, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.001, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.002, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.419, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 205887794, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.9, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 61.186184003623936, "fastp_mqc-generalstats-fastp-pct_duplication": 60.9289, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.25, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.417, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.573, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.969, "fastp_mqc-generalstats-fastp-pct_surviving": 97.97856767818656, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 214549178, "STAR_mqc-generalstats-star-uniquely_mapped": 101800299, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.32793, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.136999, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.811692, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 49.142919, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 11, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.116306, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.127746, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.872254, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 2148507, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 14670108, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 4930256, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 29210747, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 40766331, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.832265, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 35987478, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.600534, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 26844909276, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 214549178, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.0953426293948 }, { "Sample": "659_bCu-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.68550590664702, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 109487811, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 140.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.98188170173275, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 104036915, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bCu-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.94236830128425, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 109487811, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bCu-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 59, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.72641932937165, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.72641932937165, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.75842050703349, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.75842050703349, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 107274589, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 107274589, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bCu-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 60, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 60, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.90878844569613, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.90878844569613, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.4038731790675, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.4038731790675, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 107274589, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 107274589, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGW-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974376, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9567, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005892, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 154.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 144, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975425, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.497286, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.015, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.033, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.011, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 570400744, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.44, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 48.952592, "fastp_mqc-generalstats-fastp-pct_duplication": 36.3803, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.655, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.962, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.243, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.078, "fastp_mqc-generalstats-fastp-pct_surviving": 98.45570333333333, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590734220, "STAR_mqc-generalstats-star-uniquely_mapped": 281904355, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.748779, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.044866, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.943483, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 576.863529, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 261, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.641534, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.02769, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.97231, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4055967, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 142420171, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13401422, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 281819518, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 345398806, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.494356, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 298701388, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.550755, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77566011401, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590734220, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.28622867928901 }, { "Sample": "659_bGW-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.1428471374117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 471615201, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 154.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.37373971665295, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 290563672, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGW-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.10949232175913, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 471615201, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGW-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.69697477149708, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.69697477149708, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.07626496059999, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.07626496059999, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295367110, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295367110, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGW-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.80423061999016, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.80423061999016, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.4273122760888, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.4273122760888, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295367110, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295367110, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGW-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974157, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9583, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006061, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 154.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 142, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975231, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.584009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.013, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.028, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.011, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 570099417, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.38, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 49.31453616666667, "fastp_mqc-generalstats-fastp-pct_duplication": 42.444900000000004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.71, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.057, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.311, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.343, "fastp_mqc-generalstats-fastp-pct_surviving": 98.489156, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590934936, "STAR_mqc-generalstats-star-uniquely_mapped": 281826808, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.729364, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.050086, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.935468, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 468.946398, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 201, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.608322, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.031895, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.968105, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3863761, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 117278077, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12417069, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 231916914, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 227942108, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.580469, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 247915447, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.558727, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77174459104, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590934936, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.02397712951515 }, { "Sample": "659_bGW-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.15917731429379, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 532548376, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 154.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.28411904893706, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 290397598, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGW-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.01251040092733, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 532548376, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGW-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.00037833606777, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.00037833606777, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.28643965135477, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.28643965135477, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295467468, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295467468, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGW-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.11029223697818, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.11029223697818, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.6129413688728, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.6129413688728, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295467468, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295467468, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGc-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974276, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9303, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00647, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 146.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 137, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975361, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.621667, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.007, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.014, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.062, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 572849346, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.93, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 56.42989116666667, "fastp_mqc-generalstats-fastp-pct_duplication": 44.5537, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.383, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.567, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.92, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.822, "fastp_mqc-generalstats-fastp-pct_surviving": 98.38871900000001, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590332314, "STAR_mqc-generalstats-star-uniquely_mapped": 283144753, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.741676, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.060461, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.922618, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 392.922502, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 186, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.609797, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.04446, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.95554, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4889525, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 105086166, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13647082, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 208249956, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 199988826, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.617645, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 225716259, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.55676, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75317339214, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590332314, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.5784814985932 }, { "Sample": "659_bGc-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.26273273721011, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 319244665, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 146.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.06534290447127, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289455704, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGc-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.11541632857438, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 319244665, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGc-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.87586128310772, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.87586128310772, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.7768633721597, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.7768633721597, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295166157, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295166157, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGc-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.01635719368736, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.01635719368736, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.8754751938704, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.8754751938704, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295166157, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295166157, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGc-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974276, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9515, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00637, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 151.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 140, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975295, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.749131, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.006, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.09, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 573578720, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.03, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 52.767803, "fastp_mqc-generalstats-fastp-pct_duplication": 58.8932, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.405, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.607, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.965, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.004, "fastp_mqc-generalstats-fastp-pct_surviving": 98.45391066666667, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590723464, "STAR_mqc-generalstats-star-uniquely_mapped": 283627645, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.697885, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.075221, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.899861, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 256.938505, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 117, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.532319, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.057847, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.942153, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4213559, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 68626140, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11359371, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 135890678, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 128767900, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.744359, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 151012900, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.555972, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76528934904, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590723464, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.90374280613425 }, { "Sample": "659_bGc-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.00973110479018, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 361712582, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 151.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.96365732308206, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289347155, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGc-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.68335404551088, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 361712582, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGc-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.90575503532057, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.90575503532057, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.77450932554221, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.77450932554221, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295361732, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295361732, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bGc-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.02341703156048, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.02341703156048, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.80195203409139, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.80195203409139, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295361732, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295361732, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bNS-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.972755, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9583, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006228, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 157.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 145, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.973797, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.587426, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.008, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.017, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.94, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 571282087, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.75, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 46.8435035, "fastp_mqc-generalstats-fastp-pct_duplication": 43.3795, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.552, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.829, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.345, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.041, "fastp_mqc-generalstats-fastp-pct_surviving": 98.31678866666667, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589900732, "STAR_mqc-generalstats-star-uniquely_mapped": 282422919, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.74131, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.055722, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.929314, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 469.969333, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 207, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.617313, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.034812, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.965188, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4171253, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 115650625, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13681768, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 228179853, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 227881958, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.583768, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 245535797, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.560307, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77597866204, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589900732, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.2797455816676 }, { "Sample": "659_bNS-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.72959609052373, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 331530446, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 157.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.21170081206138, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289675771, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bNS-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.38840955326076, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 331530446, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bNS-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.16633202618232, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.16633202618232, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.05726103877114, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.05726103877114, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294950366, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294950366, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bNS-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.27698874596413, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.27698874596413, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.0547316991663, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.0547316991663, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294950366, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294950366, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bNS-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974475, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9514, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005926, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 160.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 147, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975449, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.643017, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.019, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.999, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 572226029, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.89, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 45.883394333333335, "fastp_mqc-generalstats-fastp-pct_duplication": 49.512699999999995, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.561, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.836, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.38, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.204, "fastp_mqc-generalstats-fastp-pct_surviving": 98.41262566666667, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590475754, "STAR_mqc-generalstats-star-uniquely_mapped": 283106010, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.730416, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.059175, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.924401, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 406.184554, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 184, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.601452, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.038022, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.961978, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3944530, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 99799233, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12606727, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 196934017, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 177569711, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.639207, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 213039642, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.552993, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77878293915, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590475754, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.64274708769891 }, { "Sample": "659_bNS-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.02336774817165, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 323132553, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 160.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.18702022437319, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289885274, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bNS-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.85901201212944, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 323132553, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bNS-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.28473215853668, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.28473215853668, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.51222279740263, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.51222279740263, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295237877, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295237877, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bNS-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.39355941785206, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.39355941785206, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.61838833179546, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.61838833179546, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295237877, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295237877, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bQZ-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973848, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9472, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008505, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 158.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 148, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974846, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.59695, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.006, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.013, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.005, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 519665225, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.17, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 45.82741796491517, "fastp_mqc-generalstats-fastp-pct_duplication": 44.6957, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.567, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.856, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.343, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.103, "fastp_mqc-generalstats-fastp-pct_surviving": 98.49856126833085, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 540201404, "STAR_mqc-generalstats-star-uniquely_mapped": 257053633, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.730105, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.056249, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.922913, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 415.352489, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 187, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.60342, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.037688, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.962312, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4032472, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 102962826, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12401222, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 203475014, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 194376101, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.591874, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 220470439, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.562319, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71731290524, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 540201404, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.85484671619318 }, { "Sample": "659_bQZ-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.35657311969317, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 274217916, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 158.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.75437495901066, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 264035253, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bQZ-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.62755509165251, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 274217916, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bQZ-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.2968764257414, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.2968764257414, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.38439919420253, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.38439919420253, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 270100702, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 270100702, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bQZ-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.39308308054675, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.39308308054675, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.82554150506726, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.82554150506726, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 270100702, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 270100702, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bQZ-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973305, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9608, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007522, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 162.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 151, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974336, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.742879, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.014, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 568576354, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.32, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 43.030159499999996, "fastp_mqc-generalstats-fastp-pct_duplication": 58.647400000000005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.608, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.935, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.418, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.392, "fastp_mqc-generalstats-fastp-pct_surviving": 98.38282233333334, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590296934, "STAR_mqc-generalstats-star-uniquely_mapped": 281323019, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.688277, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.070781, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.900589, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 279.962922, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 118, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.531185, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.05044, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.94956, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3755952, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 70708479, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10976387, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 139659935, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 135251509, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.737291, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 155076253, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.56691, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 79118411498, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590296934, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.06789207849657 }, { "Sample": "659_bQZ-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.74198999058254, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 398904753, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 162.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.6489317154407, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288209325, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bQZ-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.22721488647053, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 398904753, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bQZ-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.65768186083784, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.65768186083784, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.96645918458618, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.96645918458618, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295148467, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295148467, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bQZ-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.74356754832814, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.74356754832814, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.95681198129316, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.95681198129316, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295148467, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295148467, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bTo-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974885, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9565, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00496, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 165.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 151, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975757, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.487577, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.006, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.014, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.004, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 577067115, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.57, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 42.66989433333334, "fastp_mqc-generalstats-fastp-pct_duplication": 36.3824, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.682, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.717, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.334, "fastp_mqc-generalstats-fastp-pct_surviving": 98.56070033333333, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591364202, "STAR_mqc-generalstats-star-uniquely_mapped": 285553501, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.715121, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.042934, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.947432, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 624.437209, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 240, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.615344, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.023638, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.976362, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3535531, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 146035982, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13071748, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 288454101, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 374133468, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.485158, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 304458924, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.547952, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78956799712, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591364202, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 92.48684333521359 }, { "Sample": "659_bTo-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.97660621673198, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 454856629, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 165.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.49201186513484, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 291223250, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bTo-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.21716027622415, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 454856629, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bTo-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.90478070568093, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.90478070568093, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.3814245995126, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.3814245995126, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295682101, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295682101, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bTo-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.99490116921214, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.99490116921214, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.96616889434812, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.96616889434812, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295682101, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295682101, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bTo-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974985, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9722, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00534, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 164.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 149, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975928, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.638051, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.012, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.006, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 574272681, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.47, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 43.6038425, "fastp_mqc-generalstats-fastp-pct_duplication": 49.910700000000006, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.752, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.115, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.777, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.563, "fastp_mqc-generalstats-fastp-pct_surviving": 98.19904866666667, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589194292, "STAR_mqc-generalstats-star-uniquely_mapped": 284192266, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.679388, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.050059, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.935324, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 421.692719, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 150, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.55994, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.029243, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.970757, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3068583, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 101866759, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10776055, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 201343337, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 184525173, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.634643, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 215265956, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.552155, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78125412333, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589194292, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 92.24151901275089 }, { "Sample": "659_bTo-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.59520879511234, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 484498677, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 164.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.49312050022372, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 290157922, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bTo-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.03514429965384, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 484498677, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bTo-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.9398023903463, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.9398023903463, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.75776225973432, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.75776225973432, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294597146, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294597146, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bTo-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.04647000891177, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.04647000891177, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.95612279286594, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.95612279286594, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294597146, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294597146, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bUW-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974307, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9773, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006282, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 171.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 156, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975298, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.351695, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.014, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.031, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.007, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 295005005, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.36, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 40.69175600291005, "fastp_mqc-generalstats-fastp-pct_duplication": 25.072400000000002, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.621, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.944, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.506, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.739, "fastp_mqc-generalstats-fastp-pct_surviving": 98.53795484469849, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 312959954, "STAR_mqc-generalstats-star-uniquely_mapped": 146087529, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.673097, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.040439, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.949905, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 430.249528, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 155, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.558066, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.02121, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.97879, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 2122647, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 97954843, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 8232716, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 193386305, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 407394333, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.349485, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 203584985, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.533943, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 41992751807, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 312959954, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.38847351314176 }, { "Sample": "659_bUW-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.55309872578677, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 158801730, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 171.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.45111045741015, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 154056275, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bUW-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 79.9254264513233, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 158801730, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bUW-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.6700330931158, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.6700330931158, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.59115315051437, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 80.59115315051437, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 156479977, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 156479977, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bUW-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.75334397575992, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.75334397575992, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.08355650886107, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.08355650886107, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 156479977, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 156479977, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bUW-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974012, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9665, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005918, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 170.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 155, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97492, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.513109, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.012, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.028, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.007, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 558793160, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 40.62829683333333, "fastp_mqc-generalstats-fastp-pct_duplication": 38.257200000000005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.622, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.946, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.476, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.653, "fastp_mqc-generalstats-fastp-pct_surviving": 98.62242966666666, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591734578, "STAR_mqc-generalstats-star-uniquely_mapped": 276766531, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.701693, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.045372, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.942549, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 603.663092, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 229, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.599508, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.024486, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.975514, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3476415, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 138501436, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13153569, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 273251834, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 321257289, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.510072, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 289907338, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.534846, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 79460932003, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591734578, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.78319080119135 }, { "Sample": "659_bUW-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.69514586718091, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 310024657, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 170.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.47597549048417, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 291358199, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bUW-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.95765604382491, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 310024657, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bUW-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.81976029462317, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.81976029462317, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.56818703583454, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.56818703583454, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295867289, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295867289, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bUW-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.9034619470894, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.9034619470894, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.88416922104756, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.88416922104756, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295867289, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295867289, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bhK-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97409, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9506, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005961, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 165.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 152, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975039, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.597908, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.988, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 575265894, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.5, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 42.915299000000005, "fastp_mqc-generalstats-fastp-pct_duplication": 45.2009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.378, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.657, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.63, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.363, "fastp_mqc-generalstats-fastp-pct_surviving": 98.443144, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590658864, "STAR_mqc-generalstats-star-uniquely_mapped": 284983634, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.730913, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.055049, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.930256, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 476.861298, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 210, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.616593, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.034089, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.965911, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3987840, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 112994510, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13189900, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 222893644, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 248973800, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.594343, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 239604682, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.55518, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78733053137, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590658864, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 92.2077235779445 }, { "Sample": "659_bhK-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.6115611531854, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 331855698, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 165.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.23893508859625, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 290128489, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bhK-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.51721295281314, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 331855698, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bhK-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.78958357255772, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.78958357255772, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.92280217612249, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.92280217612249, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295329432, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295329432, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bhK-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.88299733024917, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.88299733024917, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.12441109944159, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.12441109944159, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295329432, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295329432, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bhK-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973548, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9617, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005912, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 174.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 160, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974525, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.711896, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.003, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.007, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.059, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 575576118, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.57, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 37.121297, "fastp_mqc-generalstats-fastp-pct_duplication": 56.2508, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.361, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.633, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.613, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.32, "fastp_mqc-generalstats-fastp-pct_surviving": 98.45536, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590732160, "STAR_mqc-generalstats-star-uniquely_mapped": 285234592, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.699622, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.065382, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.914394, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 341.671716, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 142, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.560959, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.04122, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.95878, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3448496, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 80212205, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11290089, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 157895980, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 160200912, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.707688, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 172678231, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.555682, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 80387173922, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590732160, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 92.3731742502766 }, { "Sample": "659_bhK-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.53474468920183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 388390796, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 174.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.16227476086624, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289938063, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bhK-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.21768341267118, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 388390796, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bhK-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 139.73492316043874, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 139.73492316043874, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.89080734730109, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.89080734730109, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295366080, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295366080, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bhK-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 139.8084508214349, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 139.8084508214349, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.95773193767505, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.95773193767505, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295366080, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295366080, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_buD-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973801, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9542, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006662, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 150.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 139, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974743, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.52141, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.013, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.026, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.006, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 572501446, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.76, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 52.851293, "fastp_mqc-generalstats-fastp-pct_duplication": 37.660900000000005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.594, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.876, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.083, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.394, "fastp_mqc-generalstats-fastp-pct_surviving": 98.49878833333334, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590992730, "STAR_mqc-generalstats-star-uniquely_mapped": 282955660, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.762299, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.054137, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.932042, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 526.49713, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 270, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.657483, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.037029, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.962971, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5160667, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 134208739, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15423467, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 265535144, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 297076222, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.517937, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 284895984, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.537068, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76063917358, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590992730, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.14985171293355 }, { "Sample": "659_buD-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.75164923064412, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 315604483, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 150.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.07968060791544, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289821891, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_buD-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.64554492608718, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 315604483, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_buD-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.099924914474, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.099924914474, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.3728209110737, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.3728209110737, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295496365, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295496365, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_buD-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.22318341885526, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.22318341885526, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.33917447900886, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.33917447900886, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295496365, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295496365, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_buD-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975142, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9635, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006406, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 152.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 140, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97601, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.57533, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.012, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.024, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.012, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 433713583, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.82, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 51.08837898091381, "fastp_mqc-generalstats-fastp-pct_duplication": 41.742200000000004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.584, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.871, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.057, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.356, "fastp_mqc-generalstats-fastp-pct_surviving": 98.53350605321386, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 447523764, "STAR_mqc-generalstats-star-uniquely_mapped": 214418117, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.728934, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.057467, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.927577, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 353.074862, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 174, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.599089, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.039703, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.960297, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3716047, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 89879896, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11016359, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 177815969, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 179416459, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.571644, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 191699362, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.534483, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 58194435620, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 447523764, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.31086527185337 }, { "Sample": "659_buD-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.70387316831301, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 227092175, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 152.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.09406188315846, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 219497119, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_buD-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.97946516126987, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 227092175, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_buD-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.2851930160294, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.2851930160294, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.74110991581901, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.74110991581901, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 223761882, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 223761882, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_buD-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.40419851760095, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.40419851760095, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.16619148908035, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.16619148908035, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 223761882, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 223761882, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bua-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974323, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9253, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005488, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 151.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 140, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975308, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.534862, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.006, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.015, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.007, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 575191553, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.23, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 51.502890166666674, "fastp_mqc-generalstats-fastp-pct_duplication": 38.1433, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.547, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.799, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.691, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.261, "fastp_mqc-generalstats-fastp-pct_surviving": 98.57383366666667, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591443002, "STAR_mqc-generalstats-star-uniquely_mapped": 284566951, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.69164, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.055275, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.933, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 517.205925, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 206, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.59325, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.037964, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.962036, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5152386, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 130565035, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15302344, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 258290652, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 293789021, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.531926, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 276838943, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.540594, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76520511411, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591443002, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.41330618219257 }, { "Sample": "659_bua-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.06187054694689, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 384362610, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 151.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.0030505120424, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289816092, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bua-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.35234498278876, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 384362610, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bua-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.7226617046016, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.7226617046016, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.26558851204503, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.26558851204503, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295721501, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295721501, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bua-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.84172877236952, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.84172877236952, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.79705488829929, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.79705488829929, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295721501, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295721501, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bua-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973873, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9392, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005639, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 154.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 142, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974855, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.677872, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.012, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 574690473, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.25, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 49.87505516666666, "fastp_mqc-generalstats-fastp-pct_duplication": 50.0717, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.583, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.874, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.726, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.416, "fastp_mqc-generalstats-fastp-pct_surviving": 98.51767566666668, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591106054, "STAR_mqc-generalstats-star-uniquely_mapped": 284471693, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.658511, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.066814, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.915885, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 349.957731, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 130, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.539596, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.047738, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.952262, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4472764, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 89221798, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12873137, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 176465119, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 162938209, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.674049, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 192671660, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.546363, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77082411241, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591106054, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.38152455002037 }, { "Sample": "659_bua-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.98396003975401, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 325084319, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 154.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.00328690255641, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289651681, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bua-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.93887801871583, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 325084319, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bua-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.8373873024146, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.8373873024146, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.46379530485294, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.46379530485294, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295553027, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295553027, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_bua-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.9537281612751, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.9537281612751, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.4942473242878, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.4942473242878, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295553027, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295553027, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_c95-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974574, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0.16, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9146, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006132, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 161.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 148, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975489, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.469307, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.013, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.027, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.129, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 571719703, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.72, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 45.5340865, "fastp_mqc-generalstats-fastp-pct_duplication": 34.2353, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.449, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.674, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.999, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.175, "fastp_mqc-generalstats-fastp-pct_surviving": 98.56371266666667, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591382276, "STAR_mqc-generalstats-star-uniquely_mapped": 283046026, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.753986, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.052328, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.936179, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 623.081243, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 306, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.655222, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.032928, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.967072, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5096627, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 149682535, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16511945, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 295405991, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 404214448, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.466429, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 315544214, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.539461, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77969234318, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591382276, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.37916820813932 }, { "Sample": "659_c95-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.0035052146678, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 348090083, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 161.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.80281883185826, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289194268, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_c95-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.176862221758, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 348090083, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_c95-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.22593821868276, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.22593821868276, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.98338580610658, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.98338580610658, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295691138, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295691138, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_c95-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.32585317791973, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.32585317791973, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.33673353817967, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.33673353817967, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295691138, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295691138, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_c95-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97433, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0.13, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9167, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006149, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 166.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 152, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975271, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.532577, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.025, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.156, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 560571925, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.74, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 42.653926498720125, "fastp_mqc-generalstats-fastp-pct_duplication": 40.0715, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.437, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.66, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.962, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.097, "fastp_mqc-generalstats-fastp-pct_surviving": 98.47661334416432, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 579786172, "STAR_mqc-generalstats-star-uniquely_mapped": 277530262, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.742307, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.055816, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.931121, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 540.828739, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 261, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.638019, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.035004, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.964996, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4674033, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 128856226, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15232534, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 254106575, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 281529652, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.529302, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 272903925, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.539659, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77331014303, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 579786172, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.38124364805084 }, { "Sample": "659_c95-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.36013924513873, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294377595, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 166.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.75984308918633, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 283399026, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_c95-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.7519336298578, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294377595, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_c95-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.8394328693993, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.8394328693993, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.43888587420722, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.43888587420722, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 289893086, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 289893086, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_c95-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.93335145288702, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.93335145288702, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.99630051190091, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.99630051190091, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 289893086, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 289893086, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cAd-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973831, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0.03, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9297, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007589, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 139.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 132, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974933, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.526794, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.013, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.03, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.005, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 515978931, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.31, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 60.59510799915463, "fastp_mqc-generalstats-fastp-pct_duplication": 35.911, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.708, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.05, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.079, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.336, "fastp_mqc-generalstats-fastp-pct_surviving": 98.48155774537645, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 534805094, "STAR_mqc-generalstats-star-uniquely_mapped": 254872531, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.724054, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.055379, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.928717, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 440.809404, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 191, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.602302, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.041492, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.958508, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5169679, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 119425222, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14133255, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 237019062, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 264556305, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.522796, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 255211176, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.550423, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 67113581197, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 534805094, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.88527276954417 }, { "Sample": "659_cAd-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.48643885831837, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 271525505, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 139.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.92594645704702, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 261856475, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cAd-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.77870484818042, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 271525505, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cAd-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.7793510508335, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.7793510508335, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.52860127101707, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.52860127101707, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 267402547, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 267402547, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cAd-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.93414527199698, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.93414527199698, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.93499291809323, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.93499291809323, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 267402547, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 267402547, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cAd-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975239, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9419, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007796, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 140.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 131, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976364, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.674804, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.026, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.012, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 568633756, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.3, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 60.10203116666667, "fastp_mqc-generalstats-fastp-pct_duplication": 48.7108, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.762, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.147, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.182, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.682, "fastp_mqc-generalstats-fastp-pct_surviving": 98.29808333333332, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589788500, "STAR_mqc-generalstats-star-uniquely_mapped": 281021071, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.692092, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.068112, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.908296, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 322.778058, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 133, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.549427, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.053401, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.946599, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5031427, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 89188732, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13274988, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 177026578, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 169849818, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.669543, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 194899678, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.553424, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74019515141, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589788500, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.85982783097687 }, { "Sample": "659_cAd-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.24936080207266, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 337660048, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 140.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.82973150544645, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288494253, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cAd-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.91182043649552, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 337660048, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cAd-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.6017195316626, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.6017195316626, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.35772558489764, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.35772558489764, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294894250, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294894250, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cAd-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 128.76170898211817, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 128.76170898211817, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.46389584275826, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.46389584275826, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294894250, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294894250, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cIX-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.972603, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9598, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005202, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 163.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 150, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97358, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.523859, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.006, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.014, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.008, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 570077279, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.44, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 44.219165021897474, "fastp_mqc-generalstats-fastp-pct_duplication": 37.696000000000005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.532, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.809, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.913, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.099, "fastp_mqc-generalstats-fastp-pct_surviving": 98.41805661848046, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 585007414, "STAR_mqc-generalstats-star-uniquely_mapped": 282078903, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.722557, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.052187, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.936949, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 555.642893, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 235, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.619345, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.033141, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.966859, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4554000, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 132859029, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14619710, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 262477458, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 299722251, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.521133, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 280140651, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.541454, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77598711507, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 585007414, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.78818955187069 }, { "Sample": "659_cIX-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.0184370934128, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297205327, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 163.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.13194435857184, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 287039575, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cIX-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.3118179218431, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 297205327, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cIX-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.32828341214835, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.32828341214835, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.08574315551935, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.08574315551935, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292503707, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 292503707, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cIX-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.4231760864487, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.4231760864487, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.52443078002406, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.52443078002406, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 292503707, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 292503707, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cIX-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974552, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9648, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00518, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 162.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 149, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975475, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.631195, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.012, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.012, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 575489737, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.44, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 44.74353283333333, "fastp_mqc-generalstats-fastp-pct_duplication": 47.6876, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.589, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.901, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.998, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.407, "fastp_mqc-generalstats-fastp-pct_surviving": 98.473952, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590843712, "STAR_mqc-generalstats-star-uniquely_mapped": 284899647, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.698516, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.059644, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.926433, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 423.05056, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 171, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.58155, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.039749, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.960251, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4267998, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 103106181, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13111985, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 203665350, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 190572974, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.627925, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 219838119, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.547029, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78200591865, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590843712, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.74105997131198 }, { "Sample": "659_cIX-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.38949299539058, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 370069558, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 162.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.10216546740537, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289815238, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cIX-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.56293240403029, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 370069558, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cIX-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.75611789535301, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.75611789535301, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.91826100579198, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.91826100579198, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295421856, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295421856, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cIX-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.85253461070937, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.85253461070937, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.39262404495999, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.39262404495999, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295421856, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295421856, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRB-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973302, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9447, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006969, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 127.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 122, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974436, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.672754, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.013, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.027, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.208, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 462751938, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.52, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 70.15487673178423, "fastp_mqc-generalstats-fastp-pct_duplication": 43.940200000000004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.623, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.962, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.986, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.236, "fastp_mqc-generalstats-fastp-pct_surviving": 98.45425621382633, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 477824582, "STAR_mqc-generalstats-star-uniquely_mapped": 228216617, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.687395, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.068881, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.910123, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 243.203375, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 115, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.528136, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.057615, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.942385, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4433840, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 72522803, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10925019, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 144351545, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 148045895, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.668065, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 158606692, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.547649, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 57419811412, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 477824582, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.37007426915231 }, { "Sample": "659_cRB-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.3816568515203, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 242663243, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 127.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.07503834116261, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 234313321, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRB-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.23351099060187, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 242663243, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRB-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.36427587143267, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.36427587143267, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.42841425178561, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.42841425178561, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 238912291, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 238912291, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRB-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.55339293113221, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.55339293113221, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.35424882042953, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.35424882042953, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 238912291, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 238912291, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRB-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974552, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9591, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006759, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 129.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 122, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975592, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.787344, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.022, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.216, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 549676535, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.59, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 68.5315322221148, "fastp_mqc-generalstats-fastp-pct_duplication": 55.3494, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.668, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.059, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.068, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.542, "fastp_mqc-generalstats-fastp-pct_surviving": 98.4455530079531, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 567211638, "STAR_mqc-generalstats-star-uniquely_mapped": 271099394, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.651921, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.084058, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.884932, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 182.870677, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 82, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.457747, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.072679, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.927321, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4306725, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 54950163, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10392931, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 109412618, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 111403143, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.782022, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 123639576, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.550838, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 68756557335, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 567211638, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.57621169635462 }, { "Sample": "659_cRB-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.24995044136075, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 288083931, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 129.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.13558268351328, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 278318223, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRB-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.70923126340404, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 288083931, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRB-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.28881386245463, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.28881386245463, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.29623676233095, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.29623676233095, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 283605819, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 283605819, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRB-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.46490180090416, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.46490180090416, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.96734114211104, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.96734114211104, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 283605819, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 283605819, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRa-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97481, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9159, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006031, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 160.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 147, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975744, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.557977, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.012, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.002, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 574900919, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.23, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 44.94547216666667, "fastp_mqc-generalstats-fastp-pct_duplication": 41.5392, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.496, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.801, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.829, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.001, "fastp_mqc-generalstats-fastp-pct_surviving": 98.53112733333333, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591186764, "STAR_mqc-generalstats-star-uniquely_mapped": 284448189, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.753836, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.051722, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.934736, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 525.02887, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 254, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.645808, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.033016, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.966984, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4252306, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 124541791, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13618775, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 246123469, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 281427144, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.554611, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 263307903, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.557714, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78302681044, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591186764, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.3250797506477 }, { "Sample": "659_cRa-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.90635158833915, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 440006046, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 160.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.23022424771337, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 290362042, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRa-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.19518485965767, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 440006046, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRa-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.81756560774423, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.81756560774423, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.35005240704488, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.35005240704488, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295593382, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295593382, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRa-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.91555762571167, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.91555762571167, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.99734245860422, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.99734245860422, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295593382, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295593382, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRa-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973629, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9323, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006304, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 160.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 147, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974592, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.665289, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.009, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 573777293, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.2, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 44.24281283333333, "fastp_mqc-generalstats-fastp-pct_duplication": 50.9416, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.525, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.875, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.876, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.239, "fastp_mqc-generalstats-fastp-pct_surviving": 98.38538933333332, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590312336, "STAR_mqc-generalstats-star-uniquely_mapped": 283939158, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.726097, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.058163, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.923237, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 390.058937, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 179, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.599999, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.038331, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.961669, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3725043, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 93456100, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11635987, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 184702535, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 171480540, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.661095, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 200059688, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.562688, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78313394275, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590312336, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.27218156172093 }, { "Sample": "659_cRa-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.22603064079664, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 483394385, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 160.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.21290910647681, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289881459, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRa-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.10335706761596, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 483394385, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRa-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.20188203554667, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.20188203554667, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.34494993259047, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.34494993259047, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295156168, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295156168, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cRa-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.3011500339034, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.3011500339034, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.84379913093565, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.84379913093565, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295156168, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295156168, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cTi-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.9738, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9336, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006699, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 151, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 139, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974775, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.499816, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.023, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.006, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 572574616, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.74, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 52.18755266666667, "fastp_mqc-generalstats-fastp-pct_duplication": 35.5686, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.516, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.776, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.888, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.791, "fastp_mqc-generalstats-fastp-pct_surviving": 98.51807666666666, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591108460, "STAR_mqc-generalstats-star-uniquely_mapped": 282959809, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.784495, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.04996, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.936735, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 561.810538, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 294, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.680113, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.033023, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.966977, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4810720, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 140868288, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14870253, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 278811913, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 336122172, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.496468, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 297642205, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545282, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76175839215, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591108460, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.35223169042622 }, { "Sample": "659_cTi-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.07509907933596, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 391105525, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 151, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.01165559362828, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289677594, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cTi-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.06989058149782, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 391105525, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cTi-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.26656838239128, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.26656838239128, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.20612804575265, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.20612804575265, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295554230, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295554230, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cTi-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.39435861229256, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.39435861229256, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.40478638863476, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.40478638863476, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295554230, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295554230, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cTi-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974726, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9603, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007201, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 164.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 152, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975685, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.620377, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.018, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.005, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 573291921, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.85, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 42.594714333333336, "fastp_mqc-generalstats-fastp-pct_duplication": 48.1326, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.545, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.829, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.875, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.823, "fastp_mqc-generalstats-fastp-pct_surviving": 98.51891466666667, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591113488, "STAR_mqc-generalstats-star-uniquely_mapped": 283285202, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.763184, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.054879, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.926372, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 437.141351, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 219, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.642035, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.035678, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.964323, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3938942, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 106464965, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12459865, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 210324443, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 208425752, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.61591, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 227041045, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545464, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 79274704191, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591113488, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.88701734812588 }, { "Sample": "659_cTi-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.96639761063113, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 384196562, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 164.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.82697971527254, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289134236, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cTi-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.80644917195505, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 384196562, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cTi-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.54036499332935, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.54036499332935, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.30486032197784, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.30486032197784, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295556744, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295556744, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cTi-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.62304659845623, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.62304659845623, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.4507669953158, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.4507669953158, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295556744, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295556744, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cVw-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973713, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9277, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00656, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 171.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 155, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974728, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.493878, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.021, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.225, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 567651021, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.26, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 39.708019666666665, "fastp_mqc-generalstats-fastp-pct_duplication": 37.5158, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.473, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.758, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.129, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.698, "fastp_mqc-generalstats-fastp-pct_surviving": 98.48002566666668, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590880154, "STAR_mqc-generalstats-star-uniquely_mapped": 281424181, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.75382, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.052699, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.934422, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 617.350327, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 287, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.650035, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.031854, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.968146, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4691193, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 142579339, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15860835, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 281234857, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 326136504, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.490638, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 300971827, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.558235, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 79248672511, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590880154, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.61951415209721 }, { "Sample": "659_cVw-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.42987963879217, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 327172275, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 171.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.9626514922686, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289420933, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cVw-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.57049871319829, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 327172275, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cVw-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.68794273973873, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.68794273973873, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.82057428239791, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.82057428239791, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295440077, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295440077, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cVw-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.78161371789787, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.78161371789787, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.1762541628449, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.1762541628449, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295440077, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295440077, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cVw-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973728, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9333, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006601, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 178.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 163, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974727, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.621017, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.007, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.015, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.184, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 567361975, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.29, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 35.74634866666667, "fastp_mqc-generalstats-fastp-pct_duplication": 49.4609, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.513, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.83, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.214, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.997, "fastp_mqc-generalstats-fastp-pct_surviving": 98.415012, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590490072, "STAR_mqc-generalstats-star-uniquely_mapped": 281347340, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.726768, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.061718, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.921052, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 461.940238, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 202, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.608343, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.037989, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.962011, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4178364, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 105809303, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13960967, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 208347605, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 204801479, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.616918, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 226206162, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.56348, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 80305949113, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590490072, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.727909357436 }, { "Sample": "659_cVw-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.88335117217758, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 412352249, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 178.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.82291242315756, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288817293, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cVw-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.83454700887421, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 412352249, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cVw-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 139.62249631523017, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 139.62249631523017, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.78563947704906, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.78563947704906, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295245036, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295245036, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cVw-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 139.7027190662064, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 139.7027190662064, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.1582583061246, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.1582583061246, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295245036, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295245036, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cWx-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.971425, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9437, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007065, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 156.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 143, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97265, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.624597, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.013, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.026, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.002, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 563669410, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.87, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 47.975975999999996, "fastp_mqc-generalstats-fastp-pct_duplication": 46.2515, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.456, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.74, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.147, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.61, "fastp_mqc-generalstats-fastp-pct_surviving": 98.02961733333333, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 588177704, "STAR_mqc-generalstats-star-uniquely_mapped": 278989242, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.710146, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.066233, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.915165, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 408.909199, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 152, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.570947, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.045247, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.954753, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4903568, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 103468876, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14796465, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 204446965, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 191294313, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.620185, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 223398902, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.594061, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76546182628, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 588177704, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.12455362218222 }, { "Sample": "659_cWx-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.6826433443635, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 371930849, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 156.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.44283336520351, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 286568510, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cWx-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.23775571620806, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 371930849, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cWx-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 59, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.88891008694202, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.88891008694202, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.1595923308342, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.1595923308342, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294088852, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294088852, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cWx-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 59, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.0378627408835, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.0378627408835, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.32516121438825, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.32516121438825, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294088852, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294088852, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cWx-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.9722, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9518, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007045, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 166.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 153, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.973371, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.702224, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.019, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.015, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 536879781, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 40.650218165756044, "fastp_mqc-generalstats-fastp-pct_duplication": 55.287600000000005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.483, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.793, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.17, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.728, "fastp_mqc-generalstats-fastp-pct_surviving": 98.22903585231232, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 559540888, "STAR_mqc-generalstats-star-uniquely_mapped": 265791637, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.679101, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.072318, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.90441, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 312.553747, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 110, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.517808, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.049588, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.950412, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4053646, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 77693542, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 12249717, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 153194173, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 150763487, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.697277, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 169385768, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.598301, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75085911246, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 559540888, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.60417418367527 }, { "Sample": "659_cWx-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.47268116470967, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 284814405, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 166.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.18904974822858, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 271906236, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cWx-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.1748186445202, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 284814405, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cWx-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 59, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.97187705431816, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.97187705431816, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.52249767739568, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.52249767739568, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 279770444, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 279770444, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cWx-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 60, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 60, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 138.07406991497643, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 138.07406991497643, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.59229771960332, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.59229771960332, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 279770444, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 279770444, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cfy-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974358, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9418, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.004883, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 162.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 149, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975323, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.509891, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.018, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.037, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.015, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 575428262, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.32, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 44.17018766666666, "fastp_mqc-generalstats-fastp-pct_duplication": 38.1907, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.642, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.922, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.954, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.932, "fastp_mqc-generalstats-fastp-pct_surviving": 98.48690500000001, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590921430, "STAR_mqc-generalstats-star-uniquely_mapped": 284581458, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.729625, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.048115, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.941972, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 581.088842, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 248, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.624937, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.028754, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.971246, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4109203, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 138798940, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14005581, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 274196307, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 310010505, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.507401, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 291087382, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.555043, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78619119040, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590921430, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.62819163991674 }, { "Sample": "659_cfy-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.58241548052936, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 379513854, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 162.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.23411582822442, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 290243221, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cfy-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.74350173512025, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 379513854, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cfy-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.49009932166447, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.49009932166447, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.98254547359382, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.98254547359382, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295460715, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295460715, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cfy-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.58941141802896, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.58941141802896, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.4162180640338, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.4162180640338, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295460715, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295460715, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cfy-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973155, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9542, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005311, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 160.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 147, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974237, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.683339, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.016, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.034, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.007, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 572144908, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.16, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 45.812402, "fastp_mqc-generalstats-fastp-pct_duplication": 52.048300000000005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.708, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.018, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.07, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.289, "fastp_mqc-generalstats-fastp-pct_surviving": 98.11666933333333, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 588700016, "STAR_mqc-generalstats-star-uniquely_mapped": 283057964, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.682957, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.059903, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.923516, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 352.816527, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 139, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.552288, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.038929, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.961071, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3567225, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 88067983, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11294989, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 174133296, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 167000467, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.67971, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 188554638, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.558724, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77365624911, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 588700016, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.1902118528668 }, { "Sample": "659_cfy-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.69114906866741, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 425582300, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 160.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.21429935208292, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289093798, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cfy-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.89289752691047, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 425582300, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cfy-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.97634195070245, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.97634195070245, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.50833617917709, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.50833617917709, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294350008, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294350008, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_cfy-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.09729249268443, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.09729249268443, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.42247117788924, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.42247117788924, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294350008, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294350008, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciJ-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974119, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9203, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00671, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 165.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 151, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975128, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.479233, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.007, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.014, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.006, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 571664995, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.79, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 42.433108000000004, "fastp_mqc-generalstats-fastp-pct_duplication": 36.8538, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.413, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.62, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.825, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.595, "fastp_mqc-generalstats-fastp-pct_surviving": 98.43693333333333, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590621600, "STAR_mqc-generalstats-star-uniquely_mapped": 282866584, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.780347, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.054451, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.932743, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 610.81792, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 300, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.669256, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.033392, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.966608, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5059194, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 146449171, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16851375, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 288660786, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 357849226, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.476018, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 309475172, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.562583, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78764622446, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590621600, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.24379428984808 }, { "Sample": "659_ciJ-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.55704468078372, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 379870111, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 165.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.6102634918872, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288253650, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciJ-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.75014070183896, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 379870111, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciJ-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.84859134173217, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.84859134173217, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.83642089141608, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.83642089141608, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295310800, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295310800, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciJ-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.94350863903387, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.94350863903387, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.39455392840831, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.39455392840831, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295310800, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295310800, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciJ-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974146, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9399, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006537, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 174.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 160, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975129, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.564177, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.006, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.002, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 572042436, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.9, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 38.374725166666664, "fastp_mqc-generalstats-fastp-pct_duplication": 44.1101, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.402, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.61, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.809, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.574, "fastp_mqc-generalstats-fastp-pct_surviving": 98.43358733333334, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590601524, "STAR_mqc-generalstats-star-uniquely_mapped": 283200071, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.766636, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.06172, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.923407, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 516.385364, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 252, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.647254, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.03796, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.96204, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4808451, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 121862273, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16020956, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 239694498, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 239516631, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.560489, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 259576108, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.559896, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 79991568475, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590601524, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.53508336006637 }, { "Sample": "659_ciJ-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.41440099212251, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 345246340, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 174.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.46632519695294, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 287818801, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciJ-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.50294577035247, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 345246340, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciJ-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 138.98791095906483, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 138.98791095906483, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.30400267301292, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.30400267301292, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295300762, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295300762, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciJ-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 139.07093930560194, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 139.07093930560194, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.62872147364237, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.62872147364237, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295300762, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295300762, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciZ-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.971729, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9508, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006362, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 136.3, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97287, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.631345, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.012, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.024, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 4.614, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 570104184, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.2, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 64.818753, "fastp_mqc-generalstats-fastp-pct_duplication": 42.8851, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.655, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.952, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.709, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.974, "fastp_mqc-generalstats-fastp-pct_surviving": 98.49971266666667, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590998276, "STAR_mqc-generalstats-star-uniquely_mapped": 281328012, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.704985, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.060284, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.922644, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 359.122039, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 161, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.578877, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.046969, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.953031, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5041612, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 102296831, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13277488, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 203210660, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 259275111, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.627329, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 220248127, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.530278, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73068470832, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590998276, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.72445922115207 }, { "Sample": "659_ciZ-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.91856974905994, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 304962074, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 136.3, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.11732378048426, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289935846, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciZ-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.7751188877204, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 304962074, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciZ-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.14442086798913, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.14442086798913, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.85039050263627, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.85039050263627, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295499138, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295499138, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciZ-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.30616517060703, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.30616517060703, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.89915752086405, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.89915752086405, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295499138, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295499138, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciZ-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.972972, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9611, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006254, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 132.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 125, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974061, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.771775, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.012, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.022, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 4.449, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 568719811, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.09, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 67.70288983333333, "fastp_mqc-generalstats-fastp-pct_duplication": 52.020900000000005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.738, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.081, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.875, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 5.401, "fastp_mqc-generalstats-fastp-pct_surviving": 98.43538, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590612280, "STAR_mqc-generalstats-star-uniquely_mapped": 280803017, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.646454, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.079846, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.893317, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 208.323403, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 86, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.470863, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.066511, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.933489, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4406209, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 61841813, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10990284, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 122959370, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 136499209, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.766948, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 137643535, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.539468, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71388705068, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590612280, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.35398712025648 }, { "Sample": "659_ciZ-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.91686564332088, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 326972626, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 132.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.09794913170448, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289689267, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciZ-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.45583892461657, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 326972626, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciZ-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.13278079487274, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.13278079487274, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.31719198885973, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.31719198885973, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295306140, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295306140, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ciZ-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.31321996555846, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.31321996555846, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.02031250190187, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.02031250190187, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295306140, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295306140, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_d01-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973969, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9121, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006295, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 155.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 143, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975035, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.554469, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.005, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 531312778, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.63, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 49.55876342180072, "fastp_mqc-generalstats-fastp-pct_duplication": 40.4391, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.367, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.571, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.923, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.003, "fastp_mqc-generalstats-fastp-pct_surviving": 98.43180901104662, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 550091604, "STAR_mqc-generalstats-star-uniquely_mapped": 263027568, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.754272, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.064035, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.921946, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 446.799081, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 234, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.637222, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.045858, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.954142, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5537956, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 115225578, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15816702, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 227723128, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 233990666, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.550979, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 247002771, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.552307, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71796078728, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 550091604, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.48656392194188 }, { "Sample": "659_d01-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.22580999973525, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 279427763, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 155.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.38979437322952, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 267866541, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_d01-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.59080574634835, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 279427763, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_d01-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 133.94068012715934, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 133.94068012715934, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.23392915085935, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.23392915085935, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 275045802, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 275045802, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_d01-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.05542330000733, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.05542330000733, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.79551023153583, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.79551023153583, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 275045802, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 275045802, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_d01-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973286, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9462, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006148, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 160.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 148, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974341, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.635258, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.008, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.005, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 406536977, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.7, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 44.94133320809668, "fastp_mqc-generalstats-fastp-pct_duplication": 48.5896, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.343, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.54, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.888, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.929, "fastp_mqc-generalstats-fastp-pct_surviving": 98.41498951758926, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 420786928, "STAR_mqc-generalstats-star-uniquely_mapped": 201348608, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.711088, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.072078, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.911245, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 279.627222, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 142, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.564046, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.052079, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.947921, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3932966, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 71585979, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11180911, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 141354299, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 142680172, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.631352, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 155122232, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.551033, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 55927814614, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 420786928, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.63040269500515 }, { "Sample": "659_d01-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.2221287189436, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 213781930, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 160.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.32004317396475, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 204755010, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_d01-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.20123699074203, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 213781930, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_d01-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.50224168560675, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.50224168560675, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.26525733938595, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.26525733938595, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 210393464, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 210393464, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_d01-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.60529504376618, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.60529504376618, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.35865487391946, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.35865487391946, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 210393464, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 210393464, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dES-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974824, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.924, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006535, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 153.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 144, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975775, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.499133, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.012, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.026, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.026, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 570539609, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.35, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 49.78917716666666, "fastp_mqc-generalstats-fastp-pct_duplication": 38.2365, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.384, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.632, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.221, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.844, "fastp_mqc-generalstats-fastp-pct_surviving": 98.61477400000001, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591688644, "STAR_mqc-generalstats-star-uniquely_mapped": 282077664, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.755172, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.058787, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.928251, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 555.861864, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 278, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.64884, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.042844, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.957156, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 6260766, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 139870173, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 17535357, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 276885191, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 332256656, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.495872, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 298287097, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.528465, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77454465072, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591688644, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.71587293958177 }, { "Sample": "659_dES-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.11648992395814, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 324361695, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 153.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.83992001036275, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289453848, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dES-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.54079783492311, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 324361695, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dES-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.22516507178395, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.22516507178395, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.55031521279236, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.55031521279236, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295844322, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295844322, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dES-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.33042197781305, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.33042197781305, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.10011358468185, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.10011358468185, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295844322, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295844322, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dES-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974281, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9473, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006669, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 154.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 143, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975279, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.598646, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.008, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 495412558, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.35, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 49.937510084484146, "fastp_mqc-generalstats-fastp-pct_duplication": 45.504, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.417, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.698, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.326, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.198, "fastp_mqc-generalstats-fastp-pct_surviving": 98.42102038783078, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 514089484, "STAR_mqc-generalstats-star-uniquely_mapped": 245092177, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.720682, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.066765, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.916783, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 379.045502, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 181, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.595197, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.050095, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.949905, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5090510, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 96527234, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13912806, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 191043305, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 183489136, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.594653, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 208384394, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.533218, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 67152923104, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 514089484, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.65575207516899 }, { "Sample": "659_dES-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.70474724378238, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 261168540, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 154.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.8030147763147, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 251397507, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dES-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.01184462631882, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 261168540, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dES-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 52, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.01233830723524, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.01233830723524, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.791854612224, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.791854612224, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 257044742, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 257044742, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dES-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.12017557239122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.12017557239122, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.26532431467442, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.26532431467442, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 257044742, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 257044742, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dc8-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974072, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9454, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00613, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 162.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 149, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975163, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.519489, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.022, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.048, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.123, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 570466449, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 44.20284266666666, "fastp_mqc-generalstats-fastp-pct_duplication": 38.873799999999996, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.471, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.733, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.527, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.647, "fastp_mqc-generalstats-fastp-pct_surviving": 98.43321866666666, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590599312, "STAR_mqc-generalstats-star-uniquely_mapped": 282138831, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.760891, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.056857, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.93047, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 553.759166, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 287, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.655414, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.036793, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.963207, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5145642, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 134707758, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16242296, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 265807654, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 292211343, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.516304, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 285670411, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.55084, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78312407738, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590599312, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.52393945521969 }, { "Sample": "659_dc8-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.8158955004168, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 327628596, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 162.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.60534668553763, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288228253, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dc8-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.87090570235677, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 327628596, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dc8-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.06763002798758, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.06763002798758, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.20761746069637, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.20761746069637, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295299656, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295299656, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dc8-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.1755221211636, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.1755221211636, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.47215065086553, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.47215065086553, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295299656, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295299656, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dc8-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973836, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9607, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006196, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 163.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 151, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974862, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.643112, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.018, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.037, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 4.99, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 569677742, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.43, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 43.380327, "fastp_mqc-generalstats-fastp-pct_duplication": 49.299, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.514, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.807, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.643, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 5.004, "fastp_mqc-generalstats-fastp-pct_surviving": 98.448313, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590689878, "STAR_mqc-generalstats-star-uniquely_mapped": 281845845, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.732558, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.066531, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.916301, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 402.807679, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 198, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.609446, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.044882, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.955118, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4654809, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 99057624, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14181970, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 195322195, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 179769744, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.639127, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 213163852, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.556833, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78529842546, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590689878, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.19814128787962 }, { "Sample": "659_dc8-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.46851918043875, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 346179532, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 163.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.3498147533857, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 287517751, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dc8-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.17947301131386, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 346179532, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dc8-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.45934022590447, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.45934022590447, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.44751270816269, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.44751270816269, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295344939, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295344939, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dc8-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.56397789501312, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.56397789501312, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.45871986480589, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.45871986480589, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295344939, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295344939, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dcz-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.972989, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9151, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009429, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 124.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 120, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974309, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.790754, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.024, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.325, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 171484063, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.01, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 75.74959857064104, "fastp_mqc-generalstats-fastp-pct_duplication": 53.4142, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.268, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.46, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.09, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.385, "fastp_mqc-generalstats-fastp-pct_surviving": 98.30878703910332, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 180081228, "STAR_mqc-generalstats-star-uniquely_mapped": 84651561, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.405464, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.143469, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.813019, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 46.973418, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 19, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.120187, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.138777, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.861223, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 2561351, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 15895236, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 5598751, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 31727290, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 46192447, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.783297, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 39024059, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.54582, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 21071780887, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 180081228, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.96760094664587 }, { "Sample": "659_dcz-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.51607186431131, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 91589589, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 124.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.60032638160375, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 86979527, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dcz-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.87702346673191, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 91589589, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dcz-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 120.14728579038788, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 120.14728579038788, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.47826410237055, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.47826410237055, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 90040614, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 90040614, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dcz-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 120.36244467413339, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 120.36244467413339, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.04783791235496, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.04783791235496, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 90040614, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 90040614, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dcz-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97343, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8677, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00923, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 121.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 117, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974806, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.835604, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.022, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.284, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 114256194, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 77.63344633908297, "fastp_mqc-generalstats-fastp-pct_duplication": 53.285700000000006, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.293, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.513, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.229, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.803, "fastp_mqc-generalstats-fastp-pct_surviving": 97.81594926246237, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 120151114, "STAR_mqc-generalstats-star-uniquely_mapped": 56473623, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.226596, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.180554, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.765816, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 23.175855, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 9, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.03656, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.179767, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.820233, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 1738217, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 7931071, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 3733691, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 15836368, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 26698224, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.827891, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 20679065, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.546864, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 13759770365, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 120151114, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.76642286297853 }, { "Sample": "659_dcz-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.48075510685946, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 61416934, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 121.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.29063614008606, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 57847136, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dcz-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.06720368425191, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 61416934, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dcz-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 117.52512626724376, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 117.52512626724376, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.41674713903845, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.41674713903845, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 60075557, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 60075557, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dcz-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 117.754702648866, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 117.754702648866, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.27608646859208, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.27608646859208, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 60075557, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 60075557, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_djb-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975408, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9336, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006328, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 145.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 136, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976402, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.551588, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.017, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.037, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.033, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 510359414, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.66, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 57.19218659030886, "fastp_mqc-generalstats-fastp-pct_duplication": 39.5981, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.556, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.862, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.601, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.848, "fastp_mqc-generalstats-fastp-pct_surviving": 98.56183071532989, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 527166558, "STAR_mqc-generalstats-star-uniquely_mapped": 252138946, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.710612, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.058355, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.927641, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 418.830639, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 183, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.590255, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.044197, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.955803, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5151834, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 111414575, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13901882, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 220989926, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 236554736, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.548097, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 238227941, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.534429, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 67379769268, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 527166558, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.61891685330173 }, { "Sample": "659_djb-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.91551574196019, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 267429366, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 145.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.0315504004334, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 258394775, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_djb-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.43293067634502, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 267429366, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_djb-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.9659989699119, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.9659989699119, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.94423004647018, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.94423004647018, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 263583279, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 263583279, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_djb-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.09419752305305, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.09419752305305, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.56917666488384, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.56917666488384, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 263583279, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 263583279, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_djb-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974055, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9402, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006486, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 136.3, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 127, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975108, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.698361, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.015, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.031, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.025, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 569532470, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.49, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 63.83628566666667, "fastp_mqc-generalstats-fastp-pct_duplication": 49.298199999999994, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.632, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.998, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.863, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 5.585, "fastp_mqc-generalstats-fastp-pct_surviving": 98.28928766666667, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589735726, "STAR_mqc-generalstats-star-uniquely_mapped": 281567573, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.673454, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.07368, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.905135, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 290.04435, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 120, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.530262, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.059725, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.940275, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5222696, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 82223547, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13303614, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 163429949, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 145334186, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.693831, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 180558576, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.537564, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 72432542747, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589735726, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.01434452159346 }, { "Sample": "659_djb-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.46304735968191, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 336084304, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 136.3, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.02224191518626, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289036090, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_djb-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.07560197987951, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 336084304, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_djb-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.99549759005104, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.99549759005104, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.6990920146624, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.6990920146624, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294867863, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294867863, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_djb-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 126.17842876624368, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 126.17842876624368, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.6748366887952, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.6748366887952, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294867863, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294867863, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dm4-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974387, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.8971, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007883, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 126, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975706, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.76586, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.014, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.029, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.385, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 321377341, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.35, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 68.35358766780433, "fastp_mqc-generalstats-fastp-pct_duplication": 55.6413, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.269, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.457, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.119, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.464, "fastp_mqc-generalstats-fastp-pct_surviving": 98.40200804486109, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 336261552, "STAR_mqc-generalstats-star-uniquely_mapped": 158636512, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.591544, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.111868, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.85531, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 111.499847, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 49, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.331256, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.102738, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.897263, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3971426, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 34684624, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 9034736, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 69076845, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 82623177, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.759823, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 80762386, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.545124, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 41017382394, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 336261552, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.9603802685034 }, { "Sample": "659_dm4-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.78818431980629, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 170861123, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 131.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.01913527122483, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 163119025, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dm4-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.22916486039608, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 170861123, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dm4-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.0889142389969, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.0889142389969, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.82589779901548, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.82589779901548, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 168130776, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 168130776, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dm4-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.27044978368505, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.27044978368505, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.4597941406604, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.4597941406604, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 168130776, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 168130776, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dm4-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.972647, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9163, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007963, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 129.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 124, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.839761, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.012, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.025, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.274, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 254364182, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.19, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 70.01405098373795, "fastp_mqc-generalstats-fastp-pct_duplication": 58.5596, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.303, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.525, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.268, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.906, "fastp_mqc-generalstats-fastp-pct_surviving": 98.056424910452, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 266778546, "STAR_mqc-generalstats-star-uniquely_mapped": 125645333, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.451615, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.150926, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.801369, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 55.961929, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 24, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.152031, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.144754, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.855246, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3029074, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 17896654, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 6721061, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 35686722, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 52672785, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.833074, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 44532196, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.553601, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 31951375388, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 266778546, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.14332277128545 }, { "Sample": "659_dm4-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.67856051532334, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 136033180, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 129.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.81776734775367, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 129144516, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dm4-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.0977393668829, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 136033180, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dm4-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.02854109565467, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.02854109565467, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.66379086317019, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.66379086317019, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 133389273, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 133389273, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dm4-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 123.22885323769626, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 123.22885323769626, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.32606536195492, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.32606536195492, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 133389273, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 133389273, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dts-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973774, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9165, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00789, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 144.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 136, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974829, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.60151, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.071, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 519985963, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.19, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 56.73817379971834, "fastp_mqc-generalstats-fastp-pct_duplication": 43.8164, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.451, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.686, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.807, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.552, "fastp_mqc-generalstats-fastp-pct_surviving": 98.49977007028092, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 539858052, "STAR_mqc-generalstats-star-uniquely_mapped": 256941061, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.745346, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.060028, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.920405, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 371.798039, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 188, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.612058, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.04495, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.95505, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4756064, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 101050932, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13067478, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 200362999, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 193305133, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.596764, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 217690041, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.560702, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 68821041300, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 539858052, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.54199240920947 }, { "Sample": "659_dts-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.39740313743123, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 274040260, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 144.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.91809014270292, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 264309347, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dts-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.40041552477211, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 274040260, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dts-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.8380619689266, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.8380619689266, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.42055712312155, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.42055712312155, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 269929026, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 269929026, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dts-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.97400763784478, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.97400763784478, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.61058252225837, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.61058252225837, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 269929026, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 269929026, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dts-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974238, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0.12, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9375, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007526, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 148.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 139, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975256, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.655732, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.008, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.114, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 569286019, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.26, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 54.691707333333326, "fastp_mqc-generalstats-fastp-pct_duplication": 49.4771, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.487, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.745, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.905, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.876, "fastp_mqc-generalstats-fastp-pct_surviving": 98.43102833333333, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590586170, "STAR_mqc-generalstats-star-uniquely_mapped": 281308494, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.74336, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.063774, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.914673, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 359.810753, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 184, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.608225, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.047266, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.952734, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4724590, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 95233857, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13152454, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 188637280, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 192477064, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.650797, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 206234705, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.554706, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75815306466, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590586170, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.83067324477778 }, { "Sample": "659_dts-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.20983868730607, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 408953705, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 148.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.82057951001461, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288857407, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dts-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.90634979850834, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 408953705, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dts-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.69672545159668, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.69672545159668, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.01335012520313, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.01335012520313, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295293085, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295293085, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_dts-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.82454096072044, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.82454096072044, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.10908736832093, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.10908736832093, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295293085, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295293085, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_eHw-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.971052, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9487, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00592, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 159.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 148, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.9722, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.689153, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.002, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.007, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 572403161, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.02, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 44.98372033333333, "fastp_mqc-generalstats-fastp-pct_duplication": 51.879200000000004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.611, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.993, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.469, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.686, "fastp_mqc-generalstats-fastp-pct_surviving": 98.26442233333333, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589586534, "STAR_mqc-generalstats-star-uniquely_mapped": 283052384, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.661067, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.057709, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.923494, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 348.727045, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 90, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.482588, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.039143, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.960857, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3526461, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 86564878, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10715141, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 171470935, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 165349972, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.685074, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 185676258, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.608991, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78171187670, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589586534, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.36548098221306 }, { "Sample": "659_eHw-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.80273404334203, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 483077510, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 159.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.3152155914063, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289826636, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_eHw-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 60, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.1418110751864, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 483077510, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_eHw-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 60, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 60, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.47672510105193, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.47672510105193, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.14781736477153, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.14781736477153, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294793267, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294793267, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_eHw-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 61, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 61, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.587623821137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.587623821137, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.11470733629197, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.11470733629197, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294793267, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294793267, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_eHw-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.971929, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9503, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005881, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 154.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 142, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.973017, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.77187, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.002, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.006, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.002, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 571447303, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.9, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 49.1043345, "fastp_mqc-generalstats-fastp-pct_duplication": 58.120400000000004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.676, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.116, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.527, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.914, "fastp_mqc-generalstats-fastp-pct_surviving": 98.244924, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589469544, "STAR_mqc-generalstats-star-uniquely_mapped": 282649610, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.613166, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.068153, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.906569, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 244.978073, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 61, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.41036, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.049637, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.950363, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3274852, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 62700526, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 9347350, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 124337406, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 121890925, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.76733, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 137151646, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.612802, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76833352433, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589469544, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.85284331247985 }, { "Sample": "659_eHw-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 91.7191988471433, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 426572365, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 154.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.25522690617584, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289592319, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_eHw-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 60, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.02261806021738, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 426572365, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_eHw-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 60, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 60, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.03791812524923, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.03791812524923, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.91238786944949, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 89.91238786944949, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294734772, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294734772, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_eHw-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 61, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 61, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.16529938652775, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.16529938652775, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.80792730266612, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 89.80792730266612, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294734772, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294734772, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ecd-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974604, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9007, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005402, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 162.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 149, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975531, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.455, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.025, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.183, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 523163259, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.91, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 43.86705129751754, "fastp_mqc-generalstats-fastp-pct_duplication": 34.025499999999994, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.341, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.521, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.734, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.327, "fastp_mqc-generalstats-fastp-pct_surviving": 98.61642978426458, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 540181198, "STAR_mqc-generalstats-star-uniquely_mapped": 259032830, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.760089, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.053828, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.936306, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 588.233182, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 281, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.648525, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.034219, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.965781, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4970689, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 140292117, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15918237, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 276890083, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 355461595, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.452543, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 295726141, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.544495, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71735988632, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 540181198, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.0912934486793 }, { "Sample": "659_ecd-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.19788238542672, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 273879920, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 162.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.93147224646646, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 264503700, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ecd-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.55144294329587, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 273879920, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ecd-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.20274865620183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.20274865620183, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.24212849635975, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.24212849635975, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 270090599, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 270090599, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ecd-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 136.30517842274102, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 136.30517842274102, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.65861762730631, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.65861762730631, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 270090599, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 270090599, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ecd-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973515, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.91, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005375, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 177.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 161, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974443, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.444403, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.019, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.145, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 441435255, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.01, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 35.71300754894062, "fastp_mqc-generalstats-fastp-pct_duplication": 33.861999999999995, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.377, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.592, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.799, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.611, "fastp_mqc-generalstats-fastp-pct_surviving": 98.49431170107957, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 455111232, "STAR_mqc-generalstats-star-uniquely_mapped": 218471953, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.748737, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.05359, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.936778, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 533.146964, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 245, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.632498, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.031036, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.968964, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3870026, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 120824118, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13608953, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 237890511, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 308195964, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.442014, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 253945574, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.543787, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 61985270071, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 455111232, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.52913621759512 }, { "Sample": "659_ecd-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.1100885731716, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 231034272, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 177.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.84435599251482, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 222650327, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ecd-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.49107392203555, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 231034272, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ecd-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 139.8614438283079, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 139.8614438283079, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.136120257664, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.136120257664, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 227555616, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 227555616, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ecd-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 139.9336136577706, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 139.9336136577706, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.67059988490034, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.67059988490034, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 227555616, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 227555616, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_epP-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97306, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9303, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006774, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 166.3, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 154, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974149, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.616584, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.007, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 563614865, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.6, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 40.49400283333333, "fastp_mqc-generalstats-fastp-pct_duplication": 47.5757, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.343, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.547, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.658, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.18, "fastp_mqc-generalstats-fastp-pct_surviving": 98.19392033333332, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589163522, "STAR_mqc-generalstats-star-uniquely_mapped": 278671932, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.72894, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.063376, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.919147, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 438.686962, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 205, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.61118, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.04156, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.95844, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4613840, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 106401802, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14472177, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 209892378, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 206110032, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.612407, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 228355632, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.567215, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 79380629252, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589163522, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.7970335034849 }, { "Sample": "659_epP-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.90468573613511, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 420825744, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 166.3, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.60975765230761, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 287540543, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_epP-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.40188673473972, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 420825744, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_epP-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 56, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 138.41340963061185, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 138.41340963061185, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.400283670455, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.400283670455, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294581761, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294581761, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_epP-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 138.50262491641496, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 138.50262491641496, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.54946129975629, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.54946129975629, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294581761, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294581761, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_epP-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.972126, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9282, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007074, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 167.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 154, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.973248, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.744044, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.006, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 561333539, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.4, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 40.510445, "fastp_mqc-generalstats-fastp-pct_duplication": 59.5163, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.369, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.595, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.708, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.362, "fastp_mqc-generalstats-fastp-pct_surviving": 98.02127266666668, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 588127636, "STAR_mqc-generalstats-star-uniquely_mapped": 277589144, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.684672, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.075844, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.897077, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 282.293143, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 123, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.537504, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.052156, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.947844, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3841612, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 69814260, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11651960, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 137818016, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 144132200, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.738781, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 153630121, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.575626, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 79100679796, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 588127636, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 86.21960949808076 }, { "Sample": "659_epP-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.856862512306, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 336868861, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 167.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.6110597190165, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 287038809, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_epP-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.88788205093356, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 336868861, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_epP-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 138.2980147765068, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 138.2980147765068, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.12493085342078, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 88.12493085342078, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294063818, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294063818, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_epP-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 138.39368544143707, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 138.39368544143707, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.70093098450063, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.70093098450063, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294063818, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294063818, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ezg-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974382, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9424, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006214, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 150.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 139, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975318, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.483825, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.02, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.008, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 571713349, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.51, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 52.3766745, "fastp_mqc-generalstats-fastp-pct_duplication": 33.9436, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.627, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.937, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.495, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.573, "fastp_mqc-generalstats-fastp-pct_surviving": 98.632046, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591792276, "STAR_mqc-generalstats-star-uniquely_mapped": 282614627, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.749865, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.050885, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.937146, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 576.002083, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 277, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.644843, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.034214, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.965786, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 5154111, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 145489772, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15634444, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 287935979, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 355721389, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.480818, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 307247791, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.548565, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 76308954456, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591792276, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.04885271370723 }, { "Sample": "659_ezg-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.56149214368189, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 361954601, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 150.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.83410049103108, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289487325, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ezg-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.04159887253358, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 361954601, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ezg-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.2704384874398, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.2704384874398, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.15138980163972, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.15138980163972, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295896138, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295896138, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ezg-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 132.38773461112223, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 132.38773461112223, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.7922346290747, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.7922346290747, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295896138, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295896138, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 147, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 147, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ezg-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974524, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9599, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006574, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 157.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 146, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975513, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.573077, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.008, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.016, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.006, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 570948814, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 47.89557533333333, "fastp_mqc-generalstats-fastp-pct_duplication": 43.025600000000004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.668, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.008, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.582, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.866, "fastp_mqc-generalstats-fastp-pct_surviving": 98.48919699999999, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590935182, "STAR_mqc-generalstats-star-uniquely_mapped": 282264699, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.733009, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.055699, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.929036, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 480.076222, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 223, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.61862, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.037433, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.962567, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4651053, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 119600400, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14175938, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 236449202, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 234797500, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.56931, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 254510161, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.551214, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 77793392399, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590935182, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.21584155615933 }, { "Sample": "659_ezg-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.90400953470886, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 453442873, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 157.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.6514270223295, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288528319, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ezg-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.68160217923797, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 453442873, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ezg-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.02914670597494, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.02914670597494, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.00707766248743, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.00707766248743, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295467591, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295467591, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_ezg-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 135.12919153288794, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 135.12919153288794, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.28376804045398, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.28376804045398, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295467591, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295467591, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_gK-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973903, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9494, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005905, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 172.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 158, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97489, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.510069, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.018, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.041, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.008, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 566244818, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.9, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 38.0906325, "fastp_mqc-generalstats-fastp-pct_duplication": 39.3975, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.463, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.727, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.269, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.085, "fastp_mqc-generalstats-fastp-pct_surviving": 98.56363266666666, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591381796, "STAR_mqc-generalstats-star-uniquely_mapped": 280609597, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.723485, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.05593, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.93209, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 594.402912, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 258, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.620051, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.033458, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.966542, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4776525, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 137984544, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16304555, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 271720937, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 309133788, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.507056, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 291517809, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9990000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.542927, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 80166630124, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591381796, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.96001423738113 }, { "Sample": "659_gK-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.77097191538411, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 375301244, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 172.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.89323545562773, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289461387, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_gK-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.1672267563187, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 375301244, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_gK-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 139.14561992368124, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 139.14561992368124, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.10428641594282, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.10428641594282, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295690898, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295690898, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_gK-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 139.22307470215063, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 139.22307470215063, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.801540305418, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.801540305418, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295690898, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295690898, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_gK-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974301, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9609, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006044, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 167, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 153, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975302, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.624889, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.016, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.034, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.006, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 565890921, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.94, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 42.011928, "fastp_mqc-generalstats-fastp-pct_duplication": 48.2767, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.525, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.823, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.462, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.605, "fastp_mqc-generalstats-fastp-pct_surviving": 98.47116866666667, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590827012, "STAR_mqc-generalstats-star-uniquely_mapped": 280475848, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.696158, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.063219, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.920828, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 435.625587, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 181, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.579258, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.040571, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.959429, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4426371, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 104675775, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14152066, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 206134356, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 190851317, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.621112, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 223857515, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.546747, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 78906074961, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590827012, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.02775333491687 }, { "Sample": "659_gK-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.80080823496498, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 367989892, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 167, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.89623667375587, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289198705, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_gK-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.59566708454943, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 367989892, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_gK-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.02339405903805, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.02339405903805, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.26802533835466, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.26802533835466, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295413506, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295413506, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_gK-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.11340906329448, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.11340906329448, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.42710207513329, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.42710207513329, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295413506, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295413506, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_rd-T1-TRNA-1_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975167, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9558, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005356, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 171.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 157, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976063, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.425976, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.003, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.007, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.686, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 461905879, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.31, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 39.88093942710136, "fastp_mqc-generalstats-fastp-pct_duplication": 32.2241, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.281, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.478, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.077, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.701, "fastp_mqc-generalstats-fastp-pct_surviving": 98.61008652742967, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 473600946, "STAR_mqc-generalstats-star-uniquely_mapped": 228068710, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.750051, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.05281, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.937897, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 560.554432, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 244, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.634906, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.032233, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.967767, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4323955, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 129824715, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 14413839, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 255988191, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 385722251, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.423695, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 272938635, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.534806, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 63711922130, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 473600946, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.83434628071161 }, { "Sample": "659_rd-T1-TRNA-1_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.6842244362536, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 240138186, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 171.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.85230116495586, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 231714712, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_rd-T1-TRNA-1_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.84259127833852, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 240138186, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_rd-T1-TRNA-1_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.90239429547086, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.90239429547086, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.72549791837385, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.72549791837385, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 236800473, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 236800473, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_rd-T1-TRNA-1_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 137.99007781542733, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 137.99007781542733, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.95372366064582, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.95372366064582, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 236800473, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 236800473, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_rd-T1-TRNA-1_A23MVY2LT4_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974627, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9656, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005472, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 171.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 157, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975552, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.560559, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.003, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.006, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.616, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 576581161, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.35, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 38.67555316666667, "fastp_mqc-generalstats-fastp-pct_duplication": 43.736000000000004, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.31, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.535, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.188, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.114, "fastp_mqc-generalstats-fastp-pct_surviving": 98.537423, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591224538, "STAR_mqc-generalstats-star-uniquely_mapped": 284823082, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.743965, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.060662, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.926971, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 530.381236, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 228, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.62616, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.038093, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.961907, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4878640, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 123193680, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15870480, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 242516064, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 246877463, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.557491, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 261621958, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.540328, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 79778445201, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591224538, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 91.90440430142903 }, { "Sample": "659_rd-T1-TRNA-1_A23MVY2LT4_2_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.94607106952287, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 361370207, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 171.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.78662907932282, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289069273, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_rd-T1-TRNA-1_A23MVY2LT4_2_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.88716636322802, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 361370207, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_rd-T1-TRNA-1_A23MVY2LT4_2_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 138.40444823688966, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 138.40444823688966, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.65308931946453, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.65308931946453, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295612269, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295612269, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "659_rd-T1-TRNA-1_A23MVY2LT4_2_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 138.4848693340262, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 138.4848693340262, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.73753415420347, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.73753415420347, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295612269, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295612269, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "FFPE_HD789_01_RNA_13_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973399, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 62.22, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9604, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005491, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 187, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 169, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974315, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.391002, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.018, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 3.948, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 496266010, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96.08, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 32.50729928948392, "fastp_mqc-generalstats-fastp-pct_duplication": 29.5777, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.76, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.083, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.69, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.967, "fastp_mqc-generalstats-fastp-pct_surviving": 98.56009432962855, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 512573856, "STAR_mqc-generalstats-star-uniquely_mapped": 246247376, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.713192, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.047892, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.943123, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 685.333758, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 274, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.615194, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.024261, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.975739, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3733130, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 150143084, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 15002380, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 295440108, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 493532943, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.388855, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 313257078, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.547517, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 70181275242, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 512573856, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.62413812422263 }, { "Sample": "FFPE_HD789_01_RNA_13_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.72385198315445, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 260031131, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 187, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.958011342662, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 251053578, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "FFPE_HD789_01_RNA_13_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.97149108033368, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 260031131, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "FFPE_HD789_01_RNA_13_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 140.62043315373464, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 140.62043315373464, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.77040209617446, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 83.77040209617446, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 256286928, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 256286928, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "FFPE_HD789_01_RNA_13_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 140.69150659919728, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 140.69150659919728, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.03033671714039, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.03033671714039, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 256286928, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 256286928, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "FFPE_V4_0002_RNA_0006_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.972641, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9669, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006876, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 177.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 163, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.973811, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.518234, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.018, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.827, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 570492025, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.77, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 34.4345825, "fastp_mqc-generalstats-fastp-pct_duplication": 39.7969, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.977, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.36, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.472, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.188, "fastp_mqc-generalstats-fastp-pct_surviving": 98.41751233333333, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590505074, "STAR_mqc-generalstats-star-uniquely_mapped": 282750668, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.605363, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.058514, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.927319, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 590.45513, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 151, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.52992, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.03388, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.96612, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4743714, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 135269748, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 16769580, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 265759634, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 314567026, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.514671, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 286589377, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.543103, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 80720599770, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590505074, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.89892533712003 }, { "Sample": "FFPE_V4_0002_RNA_0006_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.5205091903016, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 346754944, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 177.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.82656410163209, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 285882887, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "FFPE_V4_0002_RNA_0006_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.95626528478074, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 346754944, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "FFPE_V4_0002_RNA_0006_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 140.48995064181278, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 140.48995064181278, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.60900921797926, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.60900921797926, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295252537, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295252537, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "FFPE_V4_0002_RNA_0006_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 140.5837009420854, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 140.5837009420854, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.19097165902787, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.19097165902787, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295252537, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295252537, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "NTC_0001_0001_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.885273, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": "N/A", "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.4059, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.626635, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 81.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 72, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Skipped", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.93204, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.398089, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 179, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 9.39, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 50.10025358259126, "fastp_mqc-generalstats-fastp-pct_duplication": 44.029, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 3.797, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 9.889, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 3.797, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 9.889, "fastp_mqc-generalstats-fastp-pct_surviving": 2.4798018517426432, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 1682, "STAR_mqc-generalstats-star-uniquely_mapped": 79, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.219972, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.043994, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 9.2e-05, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.814208, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.185792, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 149, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 34, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 315, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 63, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 1993, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.148633, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 1432, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.712677, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 161943, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 1682, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 2.8825205295793532 }, { "Sample": "NTC_0001_0001_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 76, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 96.96585480922333, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 54.54545454545454, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 33914, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 81.1818, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 9.512485136741974, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 80, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "NTC_0001_0001_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 98, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 95.38243793123783, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 54.54545454545454, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 33914, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "NTC_0001_0001_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 67, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 67, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 108.06183115338882, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 108.06183115338882, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 34.958382877526745, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 34.958382877526745, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 45.45454545454545, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 45.45454545454545, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 841, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 841, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "NTC_0001_0001_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 75, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 75, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 109.53388822829965, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 109.53388822829965, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 42.92508917954816, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 42.92508917954816, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 45.45454545454545, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 45.45454545454545, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 841, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 841, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975559, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9527, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005269, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97652, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.551087, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.024, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.014, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 575608766, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 96, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 57.762034500000006, "fastp_mqc-generalstats-fastp-pct_duplication": 38.2737, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.613, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.904, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.324, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 4.181, "fastp_mqc-generalstats-fastp-pct_surviving": 98.599475, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 591596850, "STAR_mqc-generalstats-star-uniquely_mapped": 283975582, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.706244, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.051681, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.936658, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 474.662852, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 197, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.595617, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.03653, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.96347, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4787892, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 126279743, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13813898, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 250362333, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 267930339, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.548184, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 267293152, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.542822, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75019942258, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 591596850, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.63231366292975 }, { "Sample": "PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.50617499408119, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 391255470, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 143.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.27532178374513, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 290696854, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.15862605425512, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 391255470, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.90949344642385, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.90949344642385, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.64669590723108, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.64669590723108, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295798425, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295798425, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.04863743949954, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.04863743949954, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.40638345867524, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.40638345867524, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295798425, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295798425, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973842, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9585, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006391, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 130.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 124, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975049, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.725619, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.013, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.029, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.28, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 564511035, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.68, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 69.11044395754968, "fastp_mqc-generalstats-fastp-pct_duplication": 49.0301, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.796, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.148, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.981, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.092, "fastp_mqc-generalstats-fastp-pct_surviving": 98.31343028450243, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 581201710, "STAR_mqc-generalstats-star-uniquely_mapped": 278038265, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.640676, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.065967, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.911127, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 247.8056, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 92, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.486372, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.054166, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.945834, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4249465, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 74203312, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10697616, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 147754102, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 140801160, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.720981, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 162166354, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.54692, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 70271828618, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 581201710, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.82024299490423 }, { "Sample": "PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.40017933722135, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295586121, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 130.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.19177063329701, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 285346125, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.16684059800666, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295586121, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.04845203225572, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.04845203225572, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.42746086074696, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.42746086074696, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 290600855, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 290600855, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.248597382826, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.248597382826, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.4731119214783, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.4731119214783, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 290600855, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 290600855, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974578, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9588, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.005918, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 145.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 136, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.97563, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.609883, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.022, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.477, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 573931179, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.91, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 55.93517799999999, "fastp_mqc-generalstats-fastp-pct_duplication": 43.829499999999996, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.635, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.95, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.106, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.546, "fastp_mqc-generalstats-fastp-pct_surviving": 98.46511233333334, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590790674, "STAR_mqc-generalstats-star-uniquely_mapped": 283326973, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.700399, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.057444, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.927526, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 411.004802, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 167, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.579051, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.041929, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.958071, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4763109, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 108837206, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 13361963, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 215751774, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 209072602, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.606274, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 232609886, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.543792, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75569239959, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590790674, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.28227862132091 }, { "Sample": "PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.17115172300808, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 396121399, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 145.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.05561047160334, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289651701, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.8445277653924, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 396121399, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.1727705573091, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.1727705573091, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.22094110501001, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.22094110501001, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295395337, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295395337, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.3099249938397, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.3099249938397, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.14063586768508, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.14063586768508, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295395337, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295395337, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.972434, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9399, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006019, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 136.2, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 130, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.973518, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.738505, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.011, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.023, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.078, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 573020049, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.89, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 63.6546645, "fastp_mqc-generalstats-fastp-pct_duplication": 51.908100000000005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.702, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 1.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.108, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.55, "fastp_mqc-generalstats-fastp-pct_surviving": 98.35300500000001, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590118030, "STAR_mqc-generalstats-star-uniquely_mapped": 282934126, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.670454, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.065795, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.91157, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 251.117099, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 106, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.512503, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.052172, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.947828, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3957900, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 71905242, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10325682, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 143058327, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 143099493, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.73406, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 156936191, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.546897, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 73084420365, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590118030, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 90.19696616067337 }, { "Sample": "PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.24116557892546, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 376033679, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 136.2, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.31442906430091, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 290085586, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.4676253408186, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 376033679, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.26397219213926, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.26397219213926, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.7530604943095, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.7530604943095, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295059015, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295059015, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 127.4380887396374, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 127.4380887396374, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.31082981677777, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.31082981677777, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295059015, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295059015, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974047, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.926, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006628, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 131.8, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 125, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975239, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.773672, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.04, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.08, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.926, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 570115094, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.44, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 66.903368, "fastp_mqc-generalstats-fastp-pct_duplication": 56.962599999999995, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.48, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.705, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.928, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.711, "fastp_mqc-generalstats-fastp-pct_surviving": 98.20303700000001, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589218222, "STAR_mqc-generalstats-star-uniquely_mapped": 281180872, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.666029, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.068804, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.902558, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 208.916686, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 92, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.482764, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.056058, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.943942, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3672672, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 61843372, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 9383360, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 123089127, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 110205394, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.768544, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 136378033, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.544461, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 71708315576, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589218222, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 89.43174788827137 }, { "Sample": "PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.66510803944571, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 343252576, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 131.8, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.19443839264021, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289289762, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.10256667104119, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 343252576, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 124.84346425049971, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 124.84346425049971, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.75936617046303, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.75936617046303, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294609111, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294609111, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.0296387642947, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.0296387642947, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.62694977747294, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.62694977747294, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294609111, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294609111, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974436, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9697, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006973, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 140.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 133, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975506, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.601952, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.022, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.092, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 500611230, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.5, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 59.37235565051897, "fastp_mqc-generalstats-fastp-pct_duplication": 43.4356, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.354, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.571, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.618, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.108, "fastp_mqc-generalstats-fastp-pct_surviving": 98.41086407401777, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 523873694, "STAR_mqc-generalstats-star-uniquely_mapped": 247537885, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.736093, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.056646, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.926019, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 360.451635, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 181, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.607396, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.042831, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.957169, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4396448, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 98249155, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11936768, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 195136194, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 188477457, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.597754, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 210725942, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.553514, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 66216888245, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 523873694, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.03916862644013 }, { "Sample": "PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.46565134774497, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 266166596, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 140.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.20320353783598, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 257230375, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.93580092210462, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 266166596, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.63235681767216, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.63235681767216, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.52851972127962, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.52851972127962, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 261936847, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 261936847, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 129.78266609050235, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 129.78266609050235, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.23955635939858, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.23955635939858, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 261936847, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 261936847, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 137, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 137, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97328, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9564, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009919, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974584, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.706145, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.006, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.014, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.008, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 556411964, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.44, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 56.517392666666666, "fastp_mqc-generalstats-fastp-pct_duplication": 51.326899999999995, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.33, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.562, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.462, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.624, "fastp_mqc-generalstats-fastp-pct_surviving": 98.21028666666666, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589261720, "STAR_mqc-generalstats-star-uniquely_mapped": 275294245, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.723548, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.065632, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.901401, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 297.738636, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 143, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.572775, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.050678, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.949322, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4298157, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 80515073, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11635446, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 159804364, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 151989892, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.699141, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 177284433, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.574788, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74954734785, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589261720, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.73586101080795 }, { "Sample": "PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 56, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.45475469597967, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 363984098, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 143.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.94346084452931, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288571661, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.80731014333912, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 363984098, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.60358559860293, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.60358559860293, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 87.1230888205888, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 87.1230888205888, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294630860, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294630860, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 57, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.7692616075587, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.7692616075587, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.9249402456998, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.9249402456998, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 18.181818181818183, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294630860, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294630860, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97317, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9641, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007242, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 117.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 114, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974443, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.824061, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.069, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.139, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.056, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 211965309, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.96, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 80.49075292702967, "fastp_mqc-generalstats-fastp-pct_duplication": 51.0562, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.308, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.44, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.67, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.913, "fastp_mqc-generalstats-fastp-pct_surviving": 98.04663957734886, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 220127548, "STAR_mqc-generalstats-star-uniquely_mapped": 104512567, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.427027, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.108593, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.851597, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 48.947777, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 21, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.126971, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.100752, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.899249, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 1912315, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 17068194, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 4348347, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 34100284, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 41069821, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.818093, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 40042751, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.54921, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 24771882950, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 220127548, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.2110556897268 }, { "Sample": "PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.01801629235372, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 112256549, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 117.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.67349427796287, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 107503134, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.58614009283437, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 112256549, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 115.49352699826557, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 115.49352699826557, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.02966002972107, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.02966002972107, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 110063774, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 110063774, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 115.76835655299263, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 115.76835655299263, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.8710691772757, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.8710691772757, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 110063774, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 110063774, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 117, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 117, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.971123, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9454, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.0086, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 125.3, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 120, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.973016, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.86708, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.018, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.031, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.091, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 532874860, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.51, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 72.32099137217682, "fastp_mqc-generalstats-fastp-pct_duplication": 58.4393, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.545, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.788, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.461, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.294, "fastp_mqc-generalstats-fastp-pct_surviving": 97.91650457162645, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 557404190, "STAR_mqc-generalstats-star-uniquely_mapped": 263395866, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.472084, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.122602, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.816133, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 99.021782, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 25, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.243889, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.114367, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.885633, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4136212, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 32029863, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 9593228, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 63859710, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 74604231, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.859623, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 78246677, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.606657, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 65633834794, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 557404190, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.91390245911593 }, { "Sample": "PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.36141558965024, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 284632398, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 125.3, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.38224357445178, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 271406353, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 59, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.55068571972373, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 284632398, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 60, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 60, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 121.09303630817702, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 121.09303630817702, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.46344104894732, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 90.46344104894732, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 278702095, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 278702095, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 60, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 60, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 121.39540880379819, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 121.39540880379819, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.1449802838268, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 90.1449802838268, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 278702095, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 278702095, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97134, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9541, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009221, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 107.7, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 105, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.973071, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.824794, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.042, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.081, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.85, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 29035580, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.45, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 85.96307953689202, "fastp_mqc-generalstats-fastp-pct_duplication": 45.2151, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.443, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.619, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.699, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 1.904, "fastp_mqc-generalstats-fastp-pct_surviving": 95.02354878910747, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 30609244, "STAR_mqc-generalstats-star-uniquely_mapped": 14302248, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.035343, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.125851, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.823708, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 5.99177, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 1, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.005094, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.120512, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.879488, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 315636, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 2303496, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 704224, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 4609235, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 6221904, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.817189, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 5595717, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.58321, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 3208100783, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 30609244, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 82.9445533650978 }, { "Sample": "PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 57, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.01630770352101, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 16106136, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 107.7, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.95084269314198, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 14837960, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.03670760703814, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 36.36363636363637, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 16106136, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 107.69751288205616, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 107.69751288205616, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 82.4974888803342, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 82.4974888803342, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 15304622, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 15304622, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 107, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 107, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 58, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 58, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 108.09517405918291, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 108.09517405918291, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.98392572477452, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.98392572477452, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 15304622, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 15304622, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 107, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 107, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973148, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9739, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.007583, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 133.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 127, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974944, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.866177, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.016, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.026, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.009, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 429920456, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 92.05, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 66.44294597501086, "fastp_mqc-generalstats-fastp-pct_duplication": 60.287400000000005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.281, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.376, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.608, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.57, "fastp_mqc-generalstats-fastp-pct_surviving": 98.21712470780997, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 461742130, "STAR_mqc-generalstats-star-uniquely_mapped": 212518796, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.499913, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.102883, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.843101, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 92.221156, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 29, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.23136, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.092285, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.907715, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 2790304, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 27445528, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 6669365, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 54653854, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 58644573, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.859608, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 64824812, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.539334, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 56452513634, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 461742130, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 81.51991761088753 }, { "Sample": "PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.66133116903762, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 235061926, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 133.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.12184201168735, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 224226231, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.81608026954889, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 235061926, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.5116528136603, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.5116528136603, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.73156420803913, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 90.73156420803913, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 230871065, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 230871065, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.74087771458065, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.74087771458065, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.20757213998044, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 90.20757213998044, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 230871065, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 230871065, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.971172, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9674, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.009641, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 125.6, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 120, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.973163, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.869975, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.022, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.037, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.695, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 416258179, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 91.98, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 73.65883856285221, "fastp_mqc-generalstats-fastp-pct_duplication": 56.437000000000005, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.225, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.312, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.153, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.713, "fastp_mqc-generalstats-fastp-pct_surviving": 98.20842454261502, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 446469968, "STAR_mqc-generalstats-star-uniquely_mapped": 205326872, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.495315, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.12016, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.810186, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 78.367985, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 29, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.204631, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.114355, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.885645, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 3239179, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 25086417, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 7425565, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 50067171, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 60087708, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.861587, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 61797160, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.546248, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 52582860047, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 446469968, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 80.57075930122825 }, { "Sample": "PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.01853275026957, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 227307367, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 125.6, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.02564719873835, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 216595188, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 88.15364703217023, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 227307367, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 121.12787815999306, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 121.12787815999306, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 90.08563606562478, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 90.08563606562478, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 223234984, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 223234984, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 121.40039303606643, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 121.40039303606643, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 89.53221466492292, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 89.53221466492292, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 223234984, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 223234984, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 122, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 122, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.974337, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9744, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006764, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 133.9, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 126, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975611, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.682232, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.009, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.015, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 5.859, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 539973790, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.82, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 66.38576696910273, "fastp_mqc-generalstats-fastp-pct_duplication": 46.1137, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.465, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.645, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 2.135, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 5.206, "fastp_mqc-generalstats-fastp-pct_surviving": 98.3470923300022, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 562945688, "STAR_mqc-generalstats-star-uniquely_mapped": 266897825, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.684546, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.05961, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.919408, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 292.567364, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 120, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.532142, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.046635, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.953365, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4104017, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 83899157, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 10818305, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 166858062, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 145763366, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.677617, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 181484166, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.536669, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 68845680093, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 562945688, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.71900338098642 }, { "Sample": "PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.06175767211514, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 286203524, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 133.9, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.82222898916672, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 275343010, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 83.56486527181994, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 27.27272727272727, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 286203524, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.41374446410184, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.41374446410184, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.1191670043629, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.1191670043629, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 281472844, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 281472844, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 125.60544579213474, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 125.60544579213474, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.89858588764716, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 84.89858588764716, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 281472844, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 281472844, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 132, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 132, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.975099, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9393, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006562, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 127.5, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 121, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.976303, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.752295, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.014, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.031, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.306, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 513973521, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 95.38, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 70.97846074967134, "fastp_mqc-generalstats-fastp-pct_duplication": 53.7845, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.446, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.702, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 1.189, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 3.61, "fastp_mqc-generalstats-fastp-pct_surviving": 98.24477910205611, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 531990824, "STAR_mqc-generalstats-star-uniquely_mapped": 253706104, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.687725, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.085737, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.888291, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 192.653635, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 99, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.499556, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.075062, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.924938, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4863982, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 59935219, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11523256, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 119388667, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 124133890, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.747359, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 134402616, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.539305, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 63358500423, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 531990824, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 88.81071181327954 }, { "Sample": "PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.73787957767598, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 270747631, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 127.5, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.71081126767706, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 259906275, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.46701173800426, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 270747631, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.02891899503891, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.02891899503891, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.75851199362893, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.75851199362893, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 265995412, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 265995412, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 54, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 122.23508809994061, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 122.23508809994061, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.75175943584821, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.75175943584821, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 265995412, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 265995412, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 127, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 127, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973788, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.952, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.00853, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 146.1, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 138, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975082, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.717617, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.034, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.066, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 0.035, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 558676453, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.57, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 55.795457000000006, "fastp_mqc-generalstats-fastp-pct_duplication": 52.5532, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.274, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.399, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.726, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.138, "fastp_mqc-generalstats-fastp-pct_surviving": 98.403994, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 590423964, "STAR_mqc-generalstats-star-uniquely_mapped": 276239855, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.704608, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.069104, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.901329, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 287.084367, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 132, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.550267, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.053968, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.946032, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4415414, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 77400363, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11771102, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 153532138, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 140476655, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.711496, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 170339723, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.554929, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 75718722945, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 590423964, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 85.06150585281127 }, { "Sample": "PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.98789445246271, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 303261243, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 146.1, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.86283031018706, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 288902801, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.56073915598854, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 303261243, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.60941267282303, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.60941267282303, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.98729425542672, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.98729425542672, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295211982, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295211982, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 131.7689436264142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 131.7689436264142, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.80538245886623, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 86.80538245886623, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 295211982, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 295211982, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.973374, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9678, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.008476, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 154, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 143, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.974751, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.571927, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.031, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.064, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.26, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 313203563, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 93.48, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 49.727784032868385, "fastp_mqc-generalstats-fastp-pct_duplication": 41.55, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.28, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.418, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.768, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.314, "fastp_mqc-generalstats-fastp-pct_surviving": 98.37063342624323, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 331671720, "STAR_mqc-generalstats-star-uniquely_mapped": 155018059, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.69135, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.056036, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.924385, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 263.821236, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 119, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.533042, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.03927, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.96073, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 2739352, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 67017579, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 8046006, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 132730244, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 134894619, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.567079, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 143587602, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.553422, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 43409900436, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 331671720, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 84.82035914715821 }, { "Sample": "PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.78418623643759, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 168582690, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 154, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 97.75638031484867, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 162115134, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 80.54995920417993, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 168582690, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.3755720385205, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.3755720385205, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.79585818154933, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.79585818154933, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 165835860, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 165835860, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 55, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 55, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 134.53485445186584, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 134.53485445186584, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 81.7481662472185, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 81.7481662472185, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 165835860, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 165835860, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 151, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.97379, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 0, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": 0.9667, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": 0.006654, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 143.4, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 135, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "No", "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": 0.975007, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.655172, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.027, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.051, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": 6.429, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": 565989784, "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.75, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": 0, "fastp_mqc-generalstats-fastp-pct_adapter": 58.466139166666665, "fastp_mqc-generalstats-fastp-pct_duplication": 45.7788, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 0.476, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 0.662, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 0.99, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 2.803, "fastp_mqc-generalstats-fastp-pct_surviving": 98.31210566666667, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": 589872634, "STAR_mqc-generalstats-star-uniquely_mapped": 279450177, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": 0.689639, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": 0.055321, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": 0.925623, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": 353.414113, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": 146, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": 0.55808, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": 0.040415, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": 0.959585, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": 4044154, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": 96021517, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": 11394865, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": 190656428, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 174431406, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": 0.650812, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": 205976336, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.535812, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 74765364446, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 589872634, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 87.87987936555255 }, { "Sample": "PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 86.18099401315703, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 334141844, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": 143.4, "Kallisto_mqc-generalstats-kallisto-percent_aligned": 98.10760029257435, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 289354943, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 54, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 84.85348625042745, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 334141844, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 151, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1_trimmed_1", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.07227109979814, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.07227109979814, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.38459224039865, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.38459224039865, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294936317, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294936317, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null }, { "Sample": "PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1_trimmed_2", "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-frac_antisense": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_unmapped": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null, "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null, "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-n_q30": null, "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-score_log2tpm1_mean_chry_signature": null, "Custom content: RSeQC_mqc-generalstats-custom_content_rseqc-unique_reads_rseqc": null, "STAR_mqc-generalstats-star-uniquely_mapped_percent": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-gc_bias": null, "fastp_mqc-generalstats-fastp-pct_adapter": null, "fastp_mqc-generalstats-fastp-pct_duplication": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null, "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null, "fastp_mqc-generalstats-fastp-pct_surviving": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": 53, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads": null, "STAR_mqc-generalstats-star-uniquely_mapped": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 130.23297564945182, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": 130.23297564945182, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 85.35130768810595, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": 85.35130768810595, "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": 9.090909090909092, "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 294936317, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": 294936317, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt30x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_reads_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-mean_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-q50_depth": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_bases_gt100x": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-pairs_on_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_off_target": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-reads_on_target": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-frac_dupes": null, "Custom content: SeqTools (general stats)_mqc-generalstats-custom_content_seqtools_general_stats-unique_reads": null, "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null, "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null, "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null, "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null, "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 142, "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": 142, "Kallisto_mqc-generalstats-kallisto-fragment_length": null, "Kallisto_mqc-generalstats-kallisto-percent_aligned": null, "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null, "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null } ] }