File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0014_0015/A23MVY2LT4/nfcore_rnafusion__73d51683--20260607-225254/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0014_exp0015-73d51683
- Published
- Jun 08, 2026 7:31 AM
Content
View in new tab| sample_id | AFTER_FILTERING_Q30_RATE | CONTAMINATION_PCT | FRAC_ANTISENSE | FRAC_UNMAPPED | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | IS_CONTAMINATED | N_Q30 | PERCENT_DUPLICATION | PCT_MITO_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | SCORE_LOG2TPM1_MEAN_CHRY_SIGNATURE | UNIQUE_READS_RSEQC | UNIQUELY_MAPPED_PERCENT | GC_BIAS | PCT_ADAPTER | PCT_DUPLICATION | PCT_HK_EST_COUNTS | PCT_HK_TPM | PCT_MALE_EST_COUNTS | PCT_MALE_TPM | PCT_RIBO_EST_COUNTS | RIBOSOMAL_CONTAMINATION | PCT_SURVIVING | PERCENT_GC | READS | MAPPED_READS | AVG_SEQUENCE_LENGTH | PERCENT_DUPLICATES | PERCENT_FAILS | TOTAL_SEQUENCES | FRAC_BASES_GT30X | FRAC_READS_OFF_TARGET | FRAC_READS_ON_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT100X | FRAC_PAIRS_OFF_TARGET | FRAC_PAIRS_ON_TARGET | PAIRS_OFF_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | READS_ON_TARGET | EXPECTED_DISTINCT | FRAC_DUPES | UNIQUE_READS | TOTAL_READS | AFTER_FILTERING_GC_CONTENT | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | FRAGMENT_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_ALIGNED | PROPER_PAIRS_PERCENT | PSEUDOALIGNED_READS |
| FFPE_HD789_01_RNA_13_A23MVY2LT4_1 | 0.973399 | 62.22 | 0.9604 | 0.005491 | 187.0 | 169.0 | Yes | 0.974315 | 0.391002 | 0.009 | 0.018 | 3.948 | 496266010.0 | 96.08 | 0.0 | 32.50729928948392 | 29.5777 | 0.76 | 1.083 | 0.0 | 0.0 | 1.69 | 4.967 | 98.56009432962855 | 512573856.0 | 246247376.0 | 0.713192 | 0.047892 | 0.943123 | 685.333758 | 274.0 | 0.615194 | 0.024261 | 0.975739 | 3733130.0 | 150143084.0 | 15002380.0 | 295440108.0 | 493532943.0 | 0.388855 | 313257078.0 | 9999000000.0 | 0.547517 | 70181275242.0 | 512573856.0 | 90.62413812422263 | |||||||||
| NTC_0001_0001_A23MVY2LT4_1 | 0.885273 | N/A | 0.4059 | 0.626635 | 81.2 | 72.0 | Skipped | 0.93204 | 0.398089 | 0.0 | 0.0 | 0.0 | 179.0 | 9.39 | 0.0 | 50.10025358259126 | 44.029 | 3.797 | 9.889 | 0.0 | 0.0 | 3.797 | 9.889 | 2.4798018517426432 | 1682.0 | 79.0 | 0.0 | 0.219972 | 0.043994 | 9.2e-05 | 0.0 | 0.0 | 0.814208 | 0.185792 | 149.0 | 34.0 | 315.0 | 63.0 | 1993.0 | 0.148633 | 1432.0 | 9999000000.0 | 0.712677 | 161943.0 | 1682.0 | 2.8825205295793532 |
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