Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/bd6dc175885b6667b6947486249f01/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/bd6dc175885b6667b6947486249f01/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/7e57c12f40721ea7f2b771c2fe0e8e/659_c95-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_c95-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_c95-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_c95-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:58:34.201 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:58:34 GMT 2026] MarkDuplicates --INPUT 659_c95-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_c95-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_c95-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:58:34 GMT 2026] Executing as ?@nf-66bd6dc175885b6667b6947486249f01-17499-k94b5 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:58:34 MarkDuplicates Start of doWork freeMemory: 105827744; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:58:34 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:58:34 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:58:38 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,387,493
INFO 2026-06-08 08:58:38 MarkDuplicates Tracking 5640 as yet unmatched pairs. 2323 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:3,512,029
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 6811 as yet unmatched pairs. 422 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:8,861,393
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 11560 as yet unmatched pairs. 2216 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:11,091,055
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 12930 as yet unmatched pairs. 786 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:13,780,649
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 15715 as yet unmatched pairs. 558 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 3s. Last read position: chr1:16,976,720
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 17898 as yet unmatched pairs. 188 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:19,597,085
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 21967 as yet unmatched pairs. 1322 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:21,864,893
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 24598 as yet unmatched pairs. 1094 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:22,661,070
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 30399 as yet unmatched pairs. 4028 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:25,456,828
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 29025 as yet unmatched pairs. 94 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:27,355,719
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 32092 as yet unmatched pairs. 438 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:30,874,378
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 34926 as yet unmatched pairs. 355 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:32,695,792
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 37620 as yet unmatched pairs. 124 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:35,636,341
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 41039 as yet unmatched pairs. 624 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:39,310,385
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 43845 as yet unmatched pairs. 600 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:40,301,315
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 45960 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:43,591,170
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 50592 as yet unmatched pairs. 2034 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:45,511,285
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 56697 as yet unmatched pairs. 5271 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:47,314,080
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 54046 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:53,015,024
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 58244 as yet unmatched pairs. 1503 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:61,352,552
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 60130 as yet unmatched pairs. 579 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:75,743,440
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 63053 as yet unmatched pairs. 1024 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:88,949,835
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 64945 as yet unmatched pairs. 367 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:94,926,905
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 67585 as yet unmatched pairs. 420 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:109,172,525
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 70311 as yet unmatched pairs. 756 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:111,441,352
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 73006 as yet unmatched pairs. 701 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:113,968,528
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 75396 as yet unmatched pairs. 504 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:117,623,308
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 78999 as yet unmatched pairs. 1464 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:119,949,090
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 81798 as yet unmatched pairs. 1710 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:120,825,524
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 82899 as yet unmatched pairs. 685 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:146,102,626
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 83759 as yet unmatched pairs. 144 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:148,536,268
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 85043 as yet unmatched pairs. 187 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:149,455,497
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 87115 as yet unmatched pairs. 1151 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:150,267,368
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 89050 as yet unmatched pairs. 1475 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:151,055,677
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 90736 as yet unmatched pairs. 545 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:153,618,947
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 93047 as yet unmatched pairs. 361 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:154,183,000
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 96619 as yet unmatched pairs. 1418 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:155,052,658
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 99534 as yet unmatched pairs. 1625 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:155,438,357
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 100910 as yet unmatched pairs. 348 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:156,136,009
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 106221 as yet unmatched pairs. 2848 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:157,797,892
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 106480 as yet unmatched pairs. 245 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:160,824,180
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 108913 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:161,607,548
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 112541 as yet unmatched pairs. 1102 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:169,977,997
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 114460 as yet unmatched pairs. 390 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:176,081,189
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 117215 as yet unmatched pairs. 761 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:183,547,151
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 119970 as yet unmatched pairs. 856 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:186,353,788
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 123505 as yet unmatched pairs. 1994 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 2s. Last read position: chr1:200,665,986
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 124323 as yet unmatched pairs. 316 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:203,219,685
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 127400 as yet unmatched pairs. 499 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:205,616,585
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 130289 as yet unmatched pairs. 974 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:210,242,216
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 132010 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:220,153,369
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 134742 as yet unmatched pairs. 499 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:225,514,785
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 137949 as yet unmatched pairs. 1219 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:228,145,380
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 142095 as yet unmatched pairs. 2746 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr1:232,955,696
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 142716 as yet unmatched pairs. 179 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:236,803,445
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 145734 as yet unmatched pairs. 395 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:246,849,620
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 148177 as yet unmatched pairs. 264 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr2:9,432,622
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 151026 as yet unmatched pairs. 148606 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:20,202,892
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 155494 as yet unmatched pairs. 153034 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:26,127,863
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 156541 as yet unmatched pairs. 154045 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:28,788,792
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 162172 as yet unmatched pairs. 159645 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,257
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 229645 as yet unmatched pairs. 154842 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 635532 as yet unmatched pairs. 135191 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,265
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 1312984 as yet unmatched pairs. 103605 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 1421708 as yet unmatched pairs. 98277 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,413
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 1463451 as yet unmatched pairs. 96389 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:42,048,164
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 1505411 as yet unmatched pairs. 92043 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:46,543,038
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 1503008 as yet unmatched pairs. 89579 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:55,312,471
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 1501106 as yet unmatched pairs. 87648 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:61,878,911
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 1498929 as yet unmatched pairs. 85433 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:69,482,614
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 1495688 as yet unmatched pairs. 82125 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:73,766,581
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 1493155 as yet unmatched pairs. 79566 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:84,906,048
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 1491375 as yet unmatched pairs. 77751 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:86,789,676
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 1487398 as yet unmatched pairs. 73746 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:95,935,493
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 1486257 as yet unmatched pairs. 72530 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:97,724,328
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 1483286 as yet unmatched pairs. 69530 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:105,855,134
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 1480856 as yet unmatched pairs. 67032 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,410
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 1480292 as yet unmatched pairs. 66444 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:110,567,912
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 1479697 as yet unmatched pairs. 65834 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:113,942,301
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 1476339 as yet unmatched pairs. 62426 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:128,318,189
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 1473161 as yet unmatched pairs. 59193 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:143,033,276
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 1471916 as yet unmatched pairs. 57871 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:159,349,068
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 1468375 as yet unmatched pairs. 54264 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:173,182,918
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 1465664 as yet unmatched pairs. 51490 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:178,578,157
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 1463258 as yet unmatched pairs. 49041 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:188,974,488
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 1462325 as yet unmatched pairs. 48057 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:189,575,288
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 1458689 as yet unmatched pairs. 44382 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:197,401,522
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 1456676 as yet unmatched pairs. 42311 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:202,297,380
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 1453374 as yet unmatched pairs. 38955 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:208,324,208
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 1450973 as yet unmatched pairs. 36503 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,610
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 1464659 as yet unmatched pairs. 50164 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,368
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 1462936 as yet unmatched pairs. 48420 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr2:215,379,283
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 1465750 as yet unmatched pairs. 51223 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:215,388,240
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 1465034 as yet unmatched pairs. 50484 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,245
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 1448720 as yet unmatched pairs. 34156 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,414,837
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 1447379 as yet unmatched pairs. 32784 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,430,725
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 1442273 as yet unmatched pairs. 27654 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:217,818,715
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 1431854 as yet unmatched pairs. 17206 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:219,251,134
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 1429220 as yet unmatched pairs. 14522 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:229,789,603
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 1426740 as yet unmatched pairs. 12001 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:232,087,666
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 1424195 as yet unmatched pairs. 9424 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:237,365,832
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 1421933 as yet unmatched pairs. 7127 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr2:240,131,069
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 1418348 as yet unmatched pairs. 3489 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr2:241,702,099
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 1415436 as yet unmatched pairs. 540 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr3:9,933,549
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 1412416 as yet unmatched pairs. 69696 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:13,483,527
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 1409772 as yet unmatched pairs. 67012 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:25,642,367
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 1408292 as yet unmatched pairs. 65475 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:36,874,230
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 1404783 as yet unmatched pairs. 61924 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:40,461,426
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 1404455 as yet unmatched pairs. 61545 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:45,594,982
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 1399662 as yet unmatched pairs. 56710 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:47,407,592
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 1397180 as yet unmatched pairs. 54192 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:48,599,029
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 1394616 as yet unmatched pairs. 51576 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:49,099,118
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 1392225 as yet unmatched pairs. 49157 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr3:50,070,527
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 1388982 as yet unmatched pairs. 45884 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 2s. Last read position: chr3:52,488,427
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 1385748 as yet unmatched pairs. 42618 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:58,077,258
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 1383237 as yet unmatched pairs. 40038 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:88,055,720
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 1380997 as yet unmatched pairs. 37732 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:101,853,289
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 1378444 as yet unmatched pairs. 35153 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:112,639,510
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 1376465 as yet unmatched pairs. 33126 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:121,695,361
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 1373276 as yet unmatched pairs. 29890 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:124,773,712
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 1371320 as yet unmatched pairs. 27896 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:128,879,696
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 1368215 as yet unmatched pairs. 24734 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:132,457,274
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 1365409 as yet unmatched pairs. 21881 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:139,358,224
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 1364217 as yet unmatched pairs. 20647 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:149,572,988
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 1360605 as yet unmatched pairs. 16985 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:158,823,444
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 1359336 as yet unmatched pairs. 15654 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:177,051,531
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 1355164 as yet unmatched pairs. 11415 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:184,178,853
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 1353704 as yet unmatched pairs. 9922 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:186,572,094
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 1349998 as yet unmatched pairs. 6188 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:195,523,692
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 1347586 as yet unmatched pairs. 3736 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:196,939,367
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 1344891 as yet unmatched pairs. 1012 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr4:1,236,801
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 1344085 as yet unmatched pairs. 43190 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:3,105,417
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 1339540 as yet unmatched pairs. 38621 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:8,452,936
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 1336142 as yet unmatched pairs. 35178 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr4:25,804,591
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 1333825 as yet unmatched pairs. 32810 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr4:40,243,597
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 1331374 as yet unmatched pairs. 30316 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr4:54,267,589
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 1329560 as yet unmatched pairs. 28428 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:67,670,592
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 1326982 as yet unmatched pairs. 25812 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:75,812,237
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 1324478 as yet unmatched pairs. 23272 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:82,356,795
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 1321482 as yet unmatched pairs. 20229 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:87,975,755
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 1321989 as yet unmatched pairs. 20684 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:102,607,189
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 1316654 as yet unmatched pairs. 15291 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:113,214,102
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 1314317 as yet unmatched pairs. 12911 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:128,091,130
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 1311837 as yet unmatched pairs. 10380 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:146,187,322
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 1309338 as yet unmatched pairs. 7823 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:155,713,497
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 1307149 as yet unmatched pairs. 5599 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:174,491,822
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 1305943 as yet unmatched pairs. 4345 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 3s. Last read position: chr5:250,980
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 1301807 as yet unmatched pairs. 91433 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:14,143,841
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 1300830 as yet unmatched pairs. 90414 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:16,681,391
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 1296041 as yet unmatched pairs. 85598 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:37,024,632
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 1293950 as yet unmatched pairs. 83459 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:43,294,725
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 1292154 as yet unmatched pairs. 81640 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr5:62,366,449
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 1288834 as yet unmatched pairs. 78250 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:70,109,319
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 1286623 as yet unmatched pairs. 76014 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:73,505,209
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 1287697 as yet unmatched pairs. 77044 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:80,437,132
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 1283127 as yet unmatched pairs. 72441 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:87,268,414
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 1279942 as yet unmatched pairs. 69216 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:95,898,286
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 1277702 as yet unmatched pairs. 66940 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:111,224,579
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 1274974 as yet unmatched pairs. 64139 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:122,808,288
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 1272906 as yet unmatched pairs. 62024 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr5:132,557,157
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 1269875 as yet unmatched pairs. 58946 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 2s. Last read position: chr5:134,703,871
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 1267793 as yet unmatched pairs. 56830 records in RAM.
INFO 2026-06-08 09:03:38 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:138,561,754
INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 1265566 as yet unmatched pairs. 54568 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:140,529,594
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 1262330 as yet unmatched pairs. 51285 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:141,319,278
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 1259887 as yet unmatched pairs. 48805 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:141,864,323
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 1256837 as yet unmatched pairs. 45719 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:149,525,076
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 1258792 as yet unmatched pairs. 47643 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,095
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 1275965 as yet unmatched pairs. 64785 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,617
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 1297440 as yet unmatched pairs. 86251 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,127
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 1315873 as yet unmatched pairs. 104670 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,264
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 1273323 as yet unmatched pairs. 62101 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:151,664,225
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 1241330 as yet unmatched pairs. 30084 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:159,272,079
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 1237427 as yet unmatched pairs. 26128 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:171,390,100
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 1244113 as yet unmatched pairs. 32772 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:172,914,741
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 1233734 as yet unmatched pairs. 22364 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:177,096,110
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 1232044 as yet unmatched pairs. 20642 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:177,466,808
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 1226805 as yet unmatched pairs. 15382 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:178,605,336
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 1224292 as yet unmatched pairs. 12819 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:179,724,661
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 1226379 as yet unmatched pairs. 14886 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:179,823,907
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 1234959 as yet unmatched pairs. 23438 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 2s. Last read position: chr5:179,869,773
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 1216540 as yet unmatched pairs. 4992 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:181,238,202
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 1223642 as yet unmatched pairs. 12063 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr6:7,210,914
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 1212437 as yet unmatched pairs. 68994 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:10,695,026
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 1207281 as yet unmatched pairs. 63813 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:21,595,679
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 1204810 as yet unmatched pairs. 61285 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:26,445,809
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 1202632 as yet unmatched pairs. 59087 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:29,943,310
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 1201924 as yet unmatched pairs. 58352 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:30,892,306
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 1197247 as yet unmatched pairs. 53645 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:31,634,241
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 1194325 as yet unmatched pairs. 50716 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,081
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 1193372 as yet unmatched pairs. 49739 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr6:32,187,261
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 1189503 as yet unmatched pairs. 45857 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:32,847,972
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 1187443 as yet unmatched pairs. 43779 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:33,276,019
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 1187990 as yet unmatched pairs. 44305 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:34,247,752
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 1181408 as yet unmatched pairs. 37694 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:36,598,918
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 1179866 as yet unmatched pairs. 36111 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:42,964,319
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 1176191 as yet unmatched pairs. 32391 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:44,136,354
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 1173671 as yet unmatched pairs. 29838 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:53,269,114
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 1174051 as yet unmatched pairs. 30105 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:73,519,922
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 1168149 as yet unmatched pairs. 24165 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:82,365,919
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 1165444 as yet unmatched pairs. 21440 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:99,410,837
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 1164400 as yet unmatched pairs. 20355 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:111,376,583
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 1160575 as yet unmatched pairs. 16459 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:122,796,926
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 1158104 as yet unmatched pairs. 13968 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:137,198,149
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 1155839 as yet unmatched pairs. 11674 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:144,793,888
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 1152797 as yet unmatched pairs. 8586 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:157,110,486
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 1150510 as yet unmatched pairs. 6259 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:160,047,897
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 1147624 as yet unmatched pairs. 3362 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:170,317,568
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 1145364 as yet unmatched pairs. 1044 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr7:2,938,758
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 1141315 as yet unmatched pairs. 67185 records in RAM.
INFO 2026-06-08 09:04:58 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,321
INFO 2026-06-08 09:04:58 MarkDuplicates Tracking 1150745 as yet unmatched pairs. 76591 records in RAM.
INFO 2026-06-08 09:05:00 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:6,469,518
INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 1136729 as yet unmatched pairs. 62552 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:23,260,773
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 1134830 as yet unmatched pairs. 60614 records in RAM.
INFO 2026-06-08 09:05:04 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:32,838,478
INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 1130434 as yet unmatched pairs. 56157 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:44,058,441
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 1129518 as yet unmatched pairs. 55184 records in RAM.
INFO 2026-06-08 09:05:07 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:45,917,272
INFO 2026-06-08 09:05:07 MarkDuplicates Tracking 1125815 as yet unmatched pairs. 51435 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:66,554,594
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 1122599 as yet unmatched pairs. 48179 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:73,831,291
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 1121601 as yet unmatched pairs. 47150 records in RAM.
INFO 2026-06-08 09:05:12 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:75,553,579
INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 1118852 as yet unmatched pairs. 44370 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:77,052,830
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 1115991 as yet unmatched pairs. 41464 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:92,016,234
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 1115170 as yet unmatched pairs. 40616 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:94,400,233
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 1114021 as yet unmatched pairs. 39448 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:98,192,436
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 1108415 as yet unmatched pairs. 33809 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:99,967,247
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 1108207 as yet unmatched pairs. 33580 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:100,575,093
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 1103427 as yet unmatched pairs. 28770 records in RAM.
INFO 2026-06-08 09:05:24 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:102,446,863
INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 1100381 as yet unmatched pairs. 25697 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:106,263,490
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 1098460 as yet unmatched pairs. 23760 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:118,191,952
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 1095931 as yet unmatched pairs. 21168 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:128,085,714
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 1098379 as yet unmatched pairs. 23592 records in RAM.
INFO 2026-06-08 09:05:31 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:134,965,347
INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 1091684 as yet unmatched pairs. 16839 records in RAM.
INFO 2026-06-08 09:05:33 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr7:139,374,409
INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 1088785 as yet unmatched pairs. 13907 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr7:143,135,180
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 1105913 as yet unmatched pairs. 31008 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:144,282,290
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 1082720 as yet unmatched pairs. 7797 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:150,625,620
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 1080146 as yet unmatched pairs. 5197 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:152,180,783
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 1079003 as yet unmatched pairs. 3984 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr8:6,502,370
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 1074812 as yet unmatched pairs. 80776 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr8:17,243,128
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 1073045 as yet unmatched pairs. 78986 records in RAM.
INFO 2026-06-08 09:05:45 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr8:22,618,382
INFO 2026-06-08 09:05:45 MarkDuplicates Tracking 1071251 as yet unmatched pairs. 77165 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr8:30,070,031
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 1066832 as yet unmatched pairs. 72723 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr8:38,413,652
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 1065129 as yet unmatched pairs. 70991 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr8:42,048,600
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 1061855 as yet unmatched pairs. 67682 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr8:47,862,087
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 1059892 as yet unmatched pairs. 65682 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr8:56,073,204
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 1067484 as yet unmatched pairs. 73245 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr8:65,747,615
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 1053986 as yet unmatched pairs. 59721 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr8:70,156,786
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 1052561 as yet unmatched pairs. 58269 records in RAM.
INFO 2026-06-08 09:06:00 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr8:81,679,160
INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 1048925 as yet unmatched pairs. 54598 records in RAM.
INFO 2026-06-08 09:06:02 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr8:94,526,801
INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 1046524 as yet unmatched pairs. 52174 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 57s. Last read position: chr8:98,547,995
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 1044442 as yet unmatched pairs. 50075 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:100,706,972
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 1048596 as yet unmatched pairs. 54198 records in RAM.
INFO 2026-06-08 09:07:04 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:102,272,620
INFO 2026-06-08 09:07:04 MarkDuplicates Tracking 1039421 as yet unmatched pairs. 44990 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:109,334,393
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 1037559 as yet unmatched pairs. 43098 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:122,953,340
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 1034110 as yet unmatched pairs. 39614 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 2s. Last read position: chr8:127,740,754
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 1032036 as yet unmatched pairs. 37516 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:141,357,357
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 1028412 as yet unmatched pairs. 33798 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,606,516
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 1025634 as yet unmatched pairs. 30991 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,194
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 1024940 as yet unmatched pairs. 30271 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,956
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 1024750 as yet unmatched pairs. 30081 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,928
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 1022993 as yet unmatched pairs. 28323 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,889
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 1026363 as yet unmatched pairs. 31687 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,554
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 1020100 as yet unmatched pairs. 25419 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,316
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 1022612 as yet unmatched pairs. 27930 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 2s. Last read position: chr8:143,863,092
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 1028444 as yet unmatched pairs. 33753 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 2s. Last read position: chr8:143,863,854
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 1014245 as yet unmatched pairs. 19542 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,806
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 1017531 as yet unmatched pairs. 22827 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,807
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 1012510 as yet unmatched pairs. 17806 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,421
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 1014147 as yet unmatched pairs. 19443 records in RAM.
INFO 2026-06-08 09:07:30 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,872,714
INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 1011752 as yet unmatched pairs. 17033 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,927,667
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 1006843 as yet unmatched pairs. 12081 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 3s. Last read position: chr8:144,099,192
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 1003057 as yet unmatched pairs. 8271 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr8:144,399,449
INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 1000210 as yet unmatched pairs. 5403 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:144,791,881
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 998233 as yet unmatched pairs. 3396 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 2s. Last read position: chr9:6,015,505
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 992888 as yet unmatched pairs. 50907 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:20,933,038
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 990515 as yet unmatched pairs. 48437 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:34,690,330
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 988750 as yet unmatched pairs. 46650 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:36,837,937
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 985261 as yet unmatched pairs. 43142 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:78,236,520
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 982915 as yet unmatched pairs. 40764 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:90,878,935
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 980541 as yet unmatched pairs. 38353 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:97,617,861
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 977609 as yet unmatched pairs. 35385 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:107,311,680
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 975891 as yet unmatched pairs. 33644 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr9:113,388,239
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 972595 as yet unmatched pairs. 30330 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:121,141,494
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 969915 as yet unmatched pairs. 27619 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:125,236,601
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 967633 as yet unmatched pairs. 25316 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:128,068,411
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 964081 as yet unmatched pairs. 21741 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:128,819,158
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 961141 as yet unmatched pairs. 18784 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:130,612,997
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 958244 as yet unmatched pairs. 15847 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:132,326,573
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 956376 as yet unmatched pairs. 13959 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:134,141,582
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 952988 as yet unmatched pairs. 10549 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:136,475,739
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 950051 as yet unmatched pairs. 7590 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:137,041,083
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 946672 as yet unmatched pairs. 4186 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:137,813,515
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 943117 as yet unmatched pairs. 609 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:5,102,537
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 940970 as yet unmatched pairs. 45614 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr10:13,610,088
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 937739 as yet unmatched pairs. 42349 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr10:24,586,043
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 935496 as yet unmatched pairs. 40082 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:32,022,220
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 936338 as yet unmatched pairs. 40896 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:37,169,683
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 939087 as yet unmatched pairs. 43624 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr10:45,463,351
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 928529 as yet unmatched pairs. 33045 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:48,873,514
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 926638 as yet unmatched pairs. 31139 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:62,197,995
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 924068 as yet unmatched pairs. 28539 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:70,217,870
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 922047 as yet unmatched pairs. 26489 records in RAM.
INFO 2026-06-08 09:08:29 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:73,769,352
INFO 2026-06-08 09:08:29 MarkDuplicates Tracking 919068 as yet unmatched pairs. 23497 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,358
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 918626 as yet unmatched pairs. 23008 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:87,521,109
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 913859 as yet unmatched pairs. 18218 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:92,239,930
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 911495 as yet unmatched pairs. 15839 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:96,983,478
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 908605 as yet unmatched pairs. 12914 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:101,002,683
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 906668 as yet unmatched pairs. 10943 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:103,326,541
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 903035 as yet unmatched pairs. 7274 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:116,921,495
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 902718 as yet unmatched pairs. 6937 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:124,972,057
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 898068 as yet unmatched pairs. 2260 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr11:314,218
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 897657 as yet unmatched pairs. 91996 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr11:684,937
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 892423 as yet unmatched pairs. 86745 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 2s. Last read position: chr11:1,754,049
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 893755 as yet unmatched pairs. 88038 records in RAM.
INFO 2026-06-08 09:08:54 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 4s. Last read position: chr11:3,724,970
INFO 2026-06-08 09:08:54 MarkDuplicates Tracking 886255 as yet unmatched pairs. 80521 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:6,640,776
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 882866 as yet unmatched pairs. 77103 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:10,801,702
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 881235 as yet unmatched pairs. 75444 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr11:18,089,441
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 877661 as yet unmatched pairs. 71840 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:34,052,492
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 876382 as yet unmatched pairs. 70533 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:45,969,883
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 872624 as yet unmatched pairs. 66730 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:47,572,884
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 869607 as yet unmatched pairs. 63689 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:57,739,121
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 867405 as yet unmatched pairs. 61473 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:59,658,895
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 864477 as yet unmatched pairs. 58514 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:61,346,415
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 861659 as yet unmatched pairs. 55678 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:62,522,932
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 861195 as yet unmatched pairs. 55195 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:62,560,300
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 857797 as yet unmatched pairs. 51784 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:62,885,176
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 854652 as yet unmatched pairs. 48616 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:64,317,071
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 851554 as yet unmatched pairs. 45504 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:65,130,672
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 848325 as yet unmatched pairs. 42258 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:65,658,348
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 845755 as yet unmatched pairs. 39630 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:66,567,613
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 842013 as yet unmatched pairs. 35869 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:67,438,415
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 840115 as yet unmatched pairs. 33950 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr11:68,554,225
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 835844 as yet unmatched pairs. 29654 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:72,014,471
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 833372 as yet unmatched pairs. 27138 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr11:74,098,143
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 829743 as yet unmatched pairs. 23488 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:78,069,968
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 830169 as yet unmatched pairs. 23898 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:93,759,720
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 824611 as yet unmatched pairs. 18310 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:108,143,981
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 822075 as yet unmatched pairs. 15743 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:114,254,283
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 819336 as yet unmatched pairs. 12986 records in RAM.
INFO 2026-06-08 09:09:39 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:118,504,545
INFO 2026-06-08 09:09:39 MarkDuplicates Tracking 817526 as yet unmatched pairs. 11159 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:119,134,315
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 814172 as yet unmatched pairs. 7783 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:123,060,128
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 815310 as yet unmatched pairs. 8906 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:128,973,105
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 809845 as yet unmatched pairs. 3428 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 3s. Last read position: chr12:753,695
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 807791 as yet unmatched pairs. 82383 records in RAM.
INFO 2026-06-08 09:09:50 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr12:5,994,497
INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 804075 as yet unmatched pairs. 78652 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 2s. Last read position: chr12:6,748,821
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 801028 as yet unmatched pairs. 75597 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:7,191,319
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 798081 as yet unmatched pairs. 72645 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:10,715,716
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 796097 as yet unmatched pairs. 70639 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:15,569,414
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 793191 as yet unmatched pairs. 67701 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:29,270,541
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 790653 as yet unmatched pairs. 65139 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:45,851,067
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 788425 as yet unmatched pairs. 62888 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 2s. Last read position: chr12:48,823,419
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 785752 as yet unmatched pairs. 60188 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:49,185,178
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 784335 as yet unmatched pairs. 58761 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:50,925,462
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 781287 as yet unmatched pairs. 55703 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,796
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 779749 as yet unmatched pairs. 54147 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:53,467,247
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 778001 as yet unmatched pairs. 52388 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:54,854,551
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 821214 as yet unmatched pairs. 95584 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:54,858,233
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 774006 as yet unmatched pairs. 48357 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:56,164,494
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 767778 as yet unmatched pairs. 42115 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 2s. Last read position: chr12:56,712,454
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 768666 as yet unmatched pairs. 42983 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:57,185,779
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 763289 as yet unmatched pairs. 37592 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:57,737,498
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 759655 as yet unmatched pairs. 33946 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:66,169,804
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 757361 as yet unmatched pairs. 31633 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:75,506,831
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 755005 as yet unmatched pairs. 29238 records in RAM.
INFO 2026-06-08 09:10:26 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:93,409,947
INFO 2026-06-08 09:10:26 MarkDuplicates Tracking 753411 as yet unmatched pairs. 27622 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:100,338,866
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 750369 as yet unmatched pairs. 24558 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:105,011,761
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 747440 as yet unmatched pairs. 21609 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:110,327,567
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 745453 as yet unmatched pairs. 19597 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:112,254,049
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 742421 as yet unmatched pairs. 16547 records in RAM.
INFO 2026-06-08 09:10:34 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:113,957,855
INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 740079 as yet unmatched pairs. 14183 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:120,222,926
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 737544 as yet unmatched pairs. 11603 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:122,377,767
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 734328 as yet unmatched pairs. 8378 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 2s. Last read position: chr12:124,362,192
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 731196 as yet unmatched pairs. 5229 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:132,581,489
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 728846 as yet unmatched pairs. 2862 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr13:20,034,383
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 726936 as yet unmatched pairs. 22928 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr13:27,427,109
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 723331 as yet unmatched pairs. 19299 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr13:37,029,704
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 720330 as yet unmatched pairs. 16281 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr13:44,434,757
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 719043 as yet unmatched pairs. 14974 records in RAM.
INFO 2026-06-08 09:10:49 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr13:49,207,097
INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 716351 as yet unmatched pairs. 12272 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr13:77,081,427
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 712869 as yet unmatched pairs. 8761 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr13:99,501,768
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 712413 as yet unmatched pairs. 8283 records in RAM.
INFO 2026-06-08 09:10:55 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr13:110,466,025
INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 707598 as yet unmatched pairs. 3448 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr14:20,289,570
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 704229 as yet unmatched pairs. 56284 records in RAM.
INFO 2026-06-08 09:10:58 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr14:22,766,710
INFO 2026-06-08 09:10:58 MarkDuplicates Tracking 702221 as yet unmatched pairs. 54257 records in RAM.
INFO 2026-06-08 09:11:00 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr14:23,566,668
INFO 2026-06-08 09:11:00 MarkDuplicates Tracking 699631 as yet unmatched pairs. 51659 records in RAM.
INFO 2026-06-08 09:11:03 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 3s. Last read position: chr14:24,440,260
INFO 2026-06-08 09:11:03 MarkDuplicates Tracking 696985 as yet unmatched pairs. 49007 records in RAM.
INFO 2026-06-08 09:11:05 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:35,313,004
INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 696276 as yet unmatched pairs. 48287 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr14:49,622,058
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 691348 as yet unmatched pairs. 43269 records in RAM.
INFO 2026-06-08 09:11:08 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:54,760,222
INFO 2026-06-08 09:11:08 MarkDuplicates Tracking 688682 as yet unmatched pairs. 40521 records in RAM.
INFO 2026-06-08 09:11:10 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr14:61,727,464
INFO 2026-06-08 09:11:10 MarkDuplicates Tracking 686772 as yet unmatched pairs. 38573 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:65,076,469
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 684020 as yet unmatched pairs. 35813 records in RAM.
INFO 2026-06-08 09:11:13 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr14:69,771,355
INFO 2026-06-08 09:11:13 MarkDuplicates Tracking 681302 as yet unmatched pairs. 33051 records in RAM.
INFO 2026-06-08 09:11:15 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:74,585,893
INFO 2026-06-08 09:11:15 MarkDuplicates Tracking 678775 as yet unmatched pairs. 30493 records in RAM.
INFO 2026-06-08 09:11:16 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr14:77,866,832
INFO 2026-06-08 09:11:16 MarkDuplicates Tracking 675336 as yet unmatched pairs. 27035 records in RAM.
INFO 2026-06-08 09:11:18 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:91,975,181
INFO 2026-06-08 09:11:18 MarkDuplicates Tracking 672821 as yet unmatched pairs. 24486 records in RAM.
INFO 2026-06-08 09:11:20 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:95,710,385
INFO 2026-06-08 09:11:20 MarkDuplicates Tracking 670669 as yet unmatched pairs. 22323 records in RAM.
INFO 2026-06-08 09:11:22 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr14:102,005,205
INFO 2026-06-08 09:11:22 MarkDuplicates Tracking 668203 as yet unmatched pairs. 19832 records in RAM.
INFO 2026-06-08 09:11:25 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 3s. Last read position: chr14:103,127,110
INFO 2026-06-08 09:11:25 MarkDuplicates Tracking 664420 as yet unmatched pairs. 16037 records in RAM.
INFO 2026-06-08 09:11:27 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:105,155,751
INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 661401 as yet unmatched pairs. 12986 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,416
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 668134 as yet unmatched pairs. 19701 records in RAM.
INFO 2026-06-08 09:11:29 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,470
INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 681565 as yet unmatched pairs. 33116 records in RAM.
INFO 2026-06-08 09:11:31 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,892
INFO 2026-06-08 09:11:31 MarkDuplicates Tracking 683475 as yet unmatched pairs. 35023 records in RAM.
INFO 2026-06-08 09:11:33 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,852
INFO 2026-06-08 09:11:33 MarkDuplicates Tracking 680097 as yet unmatched pairs. 31623 records in RAM.
INFO 2026-06-08 09:11:34 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr14:105,771,225
INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 655006 as yet unmatched pairs. 6520 records in RAM.
INFO 2026-06-08 09:11:36 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,669
INFO 2026-06-08 09:11:36 MarkDuplicates Tracking 658120 as yet unmatched pairs. 9625 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr15:28,218,642
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 647209 as yet unmatched pairs. 45207 records in RAM.
INFO 2026-06-08 09:11:39 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr15:34,528,678
INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 645225 as yet unmatched pairs. 43209 records in RAM.
INFO 2026-06-08 09:11:40 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr15:40,844,816
INFO 2026-06-08 09:11:40 MarkDuplicates Tracking 643737 as yet unmatched pairs. 41693 records in RAM.
INFO 2026-06-08 09:11:42 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr15:42,237,508
INFO 2026-06-08 09:11:42 MarkDuplicates Tracking 640929 as yet unmatched pairs. 38876 records in RAM.
INFO 2026-06-08 09:11:44 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr15:43,792,374
INFO 2026-06-08 09:11:44 MarkDuplicates Tracking 644744 as yet unmatched pairs. 42677 records in RAM.
INFO 2026-06-08 09:11:46 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr15:48,331,668
INFO 2026-06-08 09:11:46 MarkDuplicates Tracking 634777 as yet unmatched pairs. 32690 records in RAM.
INFO 2026-06-08 09:11:48 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr15:51,568,487
INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 632572 as yet unmatched pairs. 30476 records in RAM.
INFO 2026-06-08 09:11:50 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr15:58,610,296
INFO 2026-06-08 09:11:50 MarkDuplicates Tracking 630031 as yet unmatched pairs. 27920 records in RAM.
INFO 2026-06-08 09:11:52 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:63,062,518
INFO 2026-06-08 09:11:52 MarkDuplicates Tracking 629330 as yet unmatched pairs. 27197 records in RAM.
INFO 2026-06-08 09:11:53 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:65,197,121
INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 625010 as yet unmatched pairs. 22863 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:69,452,835
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 621875 as yet unmatched pairs. 19718 records in RAM.
INFO 2026-06-08 09:11:57 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:73,708,424
INFO 2026-06-08 09:11:57 MarkDuplicates Tracking 619220 as yet unmatched pairs. 17046 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr15:75,208,290
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 616356 as yet unmatched pairs. 14171 records in RAM.
INFO 2026-06-08 09:12:00 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr15:78,873,035
INFO 2026-06-08 09:12:00 MarkDuplicates Tracking 614297 as yet unmatched pairs. 12105 records in RAM.
INFO 2026-06-08 09:12:01 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:84,687,624
INFO 2026-06-08 09:12:01 MarkDuplicates Tracking 612358 as yet unmatched pairs. 10146 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr15:89,903,821
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 608447 as yet unmatched pairs. 6225 records in RAM.
INFO 2026-06-08 09:12:05 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr15:90,918,361
INFO 2026-06-08 09:12:05 MarkDuplicates Tracking 605226 as yet unmatched pairs. 2995 records in RAM.
INFO 2026-06-08 09:12:06 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:101,975,079
INFO 2026-06-08 09:12:06 MarkDuplicates Tracking 602416 as yet unmatched pairs. 157 records in RAM.
INFO 2026-06-08 09:12:08 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 2s. Last read position: chr16:730,571
INFO 2026-06-08 09:12:08 MarkDuplicates Tracking 599399 as yet unmatched pairs. 77649 records in RAM.
INFO 2026-06-08 09:12:10 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:1,984,776
INFO 2026-06-08 09:12:10 MarkDuplicates Tracking 595833 as yet unmatched pairs. 74078 records in RAM.
INFO 2026-06-08 09:12:12 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:2,496,955
INFO 2026-06-08 09:12:12 MarkDuplicates Tracking 592642 as yet unmatched pairs. 70875 records in RAM.
INFO 2026-06-08 09:12:14 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,330
INFO 2026-06-08 09:12:14 MarkDuplicates Tracking 591667 as yet unmatched pairs. 69892 records in RAM.
INFO 2026-06-08 09:12:16 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:3,674,437
INFO 2026-06-08 09:12:16 MarkDuplicates Tracking 587331 as yet unmatched pairs. 65548 records in RAM.
INFO 2026-06-08 09:12:18 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:8,917,141
INFO 2026-06-08 09:12:18 MarkDuplicates Tracking 584206 as yet unmatched pairs. 62407 records in RAM.
INFO 2026-06-08 09:12:20 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:14,246,853
INFO 2026-06-08 09:12:20 MarkDuplicates Tracking 582001 as yet unmatched pairs. 60189 records in RAM.
INFO 2026-06-08 09:12:21 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:15,104,429
INFO 2026-06-08 09:12:21 MarkDuplicates Tracking 579579 as yet unmatched pairs. 57758 records in RAM.
INFO 2026-06-08 09:12:22 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:16,340,350
INFO 2026-06-08 09:12:22 MarkDuplicates Tracking 578856 as yet unmatched pairs. 57027 records in RAM.
INFO 2026-06-08 09:12:24 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:18,387,260
INFO 2026-06-08 09:12:24 MarkDuplicates Tracking 577293 as yet unmatched pairs. 55464 records in RAM.
INFO 2026-06-08 09:12:25 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:19,510,847
INFO 2026-06-08 09:12:25 MarkDuplicates Tracking 574915 as yet unmatched pairs. 53085 records in RAM.
INFO 2026-06-08 09:12:26 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,966
INFO 2026-06-08 09:12:26 MarkDuplicates Tracking 575240 as yet unmatched pairs. 53408 records in RAM.
INFO 2026-06-08 09:12:28 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,973
INFO 2026-06-08 09:12:28 MarkDuplicates Tracking 571896 as yet unmatched pairs. 50060 records in RAM.
INFO 2026-06-08 09:12:30 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:21,953,373
INFO 2026-06-08 09:12:30 MarkDuplicates Tracking 571209 as yet unmatched pairs. 49371 records in RAM.
INFO 2026-06-08 09:12:31 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,057
INFO 2026-06-08 09:12:31 MarkDuplicates Tracking 572582 as yet unmatched pairs. 50739 records in RAM.
INFO 2026-06-08 09:12:32 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:24,123,968
INFO 2026-06-08 09:12:32 MarkDuplicates Tracking 569138 as yet unmatched pairs. 47292 records in RAM.
INFO 2026-06-08 09:12:34 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:28,496,856
INFO 2026-06-08 09:12:34 MarkDuplicates Tracking 566447 as yet unmatched pairs. 44585 records in RAM.
INFO 2026-06-08 09:12:36 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 2s. Last read position: chr16:29,381,897
INFO 2026-06-08 09:12:36 MarkDuplicates Tracking 564853 as yet unmatched pairs. 42990 records in RAM.
INFO 2026-06-08 09:12:38 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:29,495,524
INFO 2026-06-08 09:12:38 MarkDuplicates Tracking 565478 as yet unmatched pairs. 43615 records in RAM.
INFO 2026-06-08 09:12:39 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:30,082,815
INFO 2026-06-08 09:12:39 MarkDuplicates Tracking 561923 as yet unmatched pairs. 40053 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:30,335,036
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 560179 as yet unmatched pairs. 38303 records in RAM.
INFO 2026-06-08 09:12:42 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:30,764,197
INFO 2026-06-08 09:12:42 MarkDuplicates Tracking 557707 as yet unmatched pairs. 35824 records in RAM.
INFO 2026-06-08 09:12:44 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:31,191,442
INFO 2026-06-08 09:12:44 MarkDuplicates Tracking 555209 as yet unmatched pairs. 33313 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:48,200,357
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 553743 as yet unmatched pairs. 31838 records in RAM.
INFO 2026-06-08 09:12:47 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:53,461,807
INFO 2026-06-08 09:12:47 MarkDuplicates Tracking 549585 as yet unmatched pairs. 27675 records in RAM.
INFO 2026-06-08 09:12:49 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:57,069,835
INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 546439 as yet unmatched pairs. 24511 records in RAM.
INFO 2026-06-08 09:12:51 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr16:66,813,588
INFO 2026-06-08 09:12:51 MarkDuplicates Tracking 543673 as yet unmatched pairs. 21740 records in RAM.
INFO 2026-06-08 09:12:53 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:67,958,007
INFO 2026-06-08 09:12:53 MarkDuplicates Tracking 540149 as yet unmatched pairs. 18199 records in RAM.
INFO 2026-06-08 09:12:54 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:70,024,655
INFO 2026-06-08 09:12:54 MarkDuplicates Tracking 537934 as yet unmatched pairs. 15975 records in RAM.
INFO 2026-06-08 09:12:56 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:72,787,462
INFO 2026-06-08 09:12:56 MarkDuplicates Tracking 534587 as yet unmatched pairs. 12611 records in RAM.
INFO 2026-06-08 09:12:57 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:81,908,534
INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 531820 as yet unmatched pairs. 9822 records in RAM.
INFO 2026-06-08 09:12:59 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:85,921,121
INFO 2026-06-08 09:12:59 MarkDuplicates Tracking 529683 as yet unmatched pairs. 7653 records in RAM.
INFO 2026-06-08 09:13:01 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:88,741,605
INFO 2026-06-08 09:13:01 MarkDuplicates Tracking 527058 as yet unmatched pairs. 5013 records in RAM.
INFO 2026-06-08 09:13:02 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:89,911,113
INFO 2026-06-08 09:13:02 MarkDuplicates Tracking 523116 as yet unmatched pairs. 1058 records in RAM.
INFO 2026-06-08 09:13:06 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 3s. Last read position: chr17:1,591,410
INFO 2026-06-08 09:13:06 MarkDuplicates Tracking 519771 as yet unmatched pairs. 244849 records in RAM.
INFO 2026-06-08 09:13:08 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:2,377,055
INFO 2026-06-08 09:13:08 MarkDuplicates Tracking 517655 as yet unmatched pairs. 242731 records in RAM.
INFO 2026-06-08 09:13:10 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr17:4,560,434
INFO 2026-06-08 09:13:10 MarkDuplicates Tracking 513636 as yet unmatched pairs. 238704 records in RAM.
INFO 2026-06-08 09:13:12 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr17:5,432,530
INFO 2026-06-08 09:13:12 MarkDuplicates Tracking 511131 as yet unmatched pairs. 236194 records in RAM.
INFO 2026-06-08 09:13:14 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:7,501,635
INFO 2026-06-08 09:13:14 MarkDuplicates Tracking 508521 as yet unmatched pairs. 233582 records in RAM.
INFO 2026-06-08 09:13:16 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:8,039,136
INFO 2026-06-08 09:13:16 MarkDuplicates Tracking 507788 as yet unmatched pairs. 232846 records in RAM.
INFO 2026-06-08 09:13:17 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:16,101,675
INFO 2026-06-08 09:13:17 MarkDuplicates Tracking 503779 as yet unmatched pairs. 228834 records in RAM.
INFO 2026-06-08 09:13:19 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:18,254,634
INFO 2026-06-08 09:13:19 MarkDuplicates Tracking 501236 as yet unmatched pairs. 226283 records in RAM.
INFO 2026-06-08 09:13:21 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:28,353,753
INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 498030 as yet unmatched pairs. 223072 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:30,461,189
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 495267 as yet unmatched pairs. 220304 records in RAM.
INFO 2026-06-08 09:13:24 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:35,422,484
INFO 2026-06-08 09:13:24 MarkDuplicates Tracking 492436 as yet unmatched pairs. 217457 records in RAM.
INFO 2026-06-08 09:13:27 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 3s. Last read position: chr17:37,978,881
INFO 2026-06-08 09:13:27 MarkDuplicates Tracking 490635 as yet unmatched pairs. 215652 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:39,462,245
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 488093 as yet unmatched pairs. 213108 records in RAM.
INFO 2026-06-08 09:13:30 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:39,670,350
INFO 2026-06-08 09:13:30 MarkDuplicates Tracking 485006 as yet unmatched pairs. 209973 records in RAM.
INFO 2026-06-08 09:13:32 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:39,700,235
INFO 2026-06-08 09:13:32 MarkDuplicates Tracking 589543 as yet unmatched pairs. 314504 records in RAM.
INFO 2026-06-08 09:13:34 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:39,707,034
INFO 2026-06-08 09:13:34 MarkDuplicates Tracking 604838 as yet unmatched pairs. 329798 records in RAM.
INFO 2026-06-08 09:13:36 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:39,708,345
INFO 2026-06-08 09:13:36 MarkDuplicates Tracking 533428 as yet unmatched pairs. 258379 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,313
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 518764 as yet unmatched pairs. 243706 records in RAM.
INFO 2026-06-08 09:13:39 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,813
INFO 2026-06-08 09:13:39 MarkDuplicates Tracking 641779 as yet unmatched pairs. 366717 records in RAM.
INFO 2026-06-08 09:13:42 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr17:39,710,115
INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 616864 as yet unmatched pairs. 341782 records in RAM.
INFO 2026-06-08 09:13:44 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr17:39,710,384
INFO 2026-06-08 09:13:44 MarkDuplicates Tracking 530369 as yet unmatched pairs. 255287 records in RAM.
INFO 2026-06-08 09:13:46 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:39,711,970
INFO 2026-06-08 09:13:46 MarkDuplicates Tracking 566235 as yet unmatched pairs. 291140 records in RAM.
INFO 2026-06-08 09:13:47 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:39,712,398
INFO 2026-06-08 09:13:47 MarkDuplicates Tracking 603543 as yet unmatched pairs. 328380 records in RAM.
INFO 2026-06-08 09:13:49 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,345
INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 539696 as yet unmatched pairs. 264467 records in RAM.
INFO 2026-06-08 09:13:51 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,819
INFO 2026-06-08 09:13:51 MarkDuplicates Tracking 522799 as yet unmatched pairs. 247564 records in RAM.
INFO 2026-06-08 09:13:53 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:39,716,334
INFO 2026-06-08 09:13:53 MarkDuplicates Tracking 581578 as yet unmatched pairs. 306319 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 2s. Last read position: chr17:39,716,542
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 603079 as yet unmatched pairs. 327655 records in RAM.
INFO 2026-06-08 09:13:57 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr17:39,717,369
INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 547575 as yet unmatched pairs. 271578 records in RAM.
INFO 2026-06-08 09:13:59 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,330
INFO 2026-06-08 09:13:59 MarkDuplicates Tracking 558609 as yet unmatched pairs. 282609 records in RAM.
INFO 2026-06-08 09:14:01 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,582
INFO 2026-06-08 09:14:01 MarkDuplicates Tracking 570245 as yet unmatched pairs. 294235 records in RAM.
INFO 2026-06-08 09:14:02 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:39,724,726
INFO 2026-06-08 09:14:02 MarkDuplicates Tracking 491878 as yet unmatched pairs. 215864 records in RAM.
INFO 2026-06-08 09:14:04 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,086
INFO 2026-06-08 09:14:04 MarkDuplicates Tracking 500346 as yet unmatched pairs. 224326 records in RAM.
INFO 2026-06-08 09:14:06 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,753
INFO 2026-06-08 09:14:06 MarkDuplicates Tracking 496575 as yet unmatched pairs. 220555 records in RAM.
INFO 2026-06-08 09:14:08 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,644
INFO 2026-06-08 09:14:08 MarkDuplicates Tracking 524826 as yet unmatched pairs. 248805 records in RAM.
INFO 2026-06-08 09:14:09 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,342
INFO 2026-06-08 09:14:09 MarkDuplicates Tracking 482662 as yet unmatched pairs. 206641 records in RAM.
INFO 2026-06-08 09:14:12 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 2s. Last read position: chr17:39,727,775
INFO 2026-06-08 09:14:12 MarkDuplicates Tracking 464104 as yet unmatched pairs. 188081 records in RAM.
INFO 2026-06-08 09:14:13 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr17:39,746,073
INFO 2026-06-08 09:14:13 MarkDuplicates Tracking 420446 as yet unmatched pairs. 144416 records in RAM.
INFO 2026-06-08 09:14:15 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:41,523,740
INFO 2026-06-08 09:14:15 MarkDuplicates Tracking 415852 as yet unmatched pairs. 139816 records in RAM.
INFO 2026-06-08 09:14:17 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr17:42,565,478
INFO 2026-06-08 09:14:17 MarkDuplicates Tracking 411839 as yet unmatched pairs. 135803 records in RAM.
INFO 2026-06-08 09:14:19 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr17:44,352,696
INFO 2026-06-08 09:14:19 MarkDuplicates Tracking 412015 as yet unmatched pairs. 135978 records in RAM.
INFO 2026-06-08 09:14:20 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:46,674,512
INFO 2026-06-08 09:14:20 MarkDuplicates Tracking 406840 as yet unmatched pairs. 130803 records in RAM.
INFO 2026-06-08 09:14:23 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 2s. Last read position: chr17:49,703,003
INFO 2026-06-08 09:14:23 MarkDuplicates Tracking 408835 as yet unmatched pairs. 132788 records in RAM.
INFO 2026-06-08 09:14:25 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 2s. Last read position: chr17:50,185,949
INFO 2026-06-08 09:14:25 MarkDuplicates Tracking 414848 as yet unmatched pairs. 138799 records in RAM.
INFO 2026-06-08 09:14:27 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,938
INFO 2026-06-08 09:14:27 MarkDuplicates Tracking 430218 as yet unmatched pairs. 154165 records in RAM.
INFO 2026-06-08 09:14:29 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,400
INFO 2026-06-08 09:14:29 MarkDuplicates Tracking 417789 as yet unmatched pairs. 141727 records in RAM.
INFO 2026-06-08 09:14:31 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,817
INFO 2026-06-08 09:14:31 MarkDuplicates Tracking 402430 as yet unmatched pairs. 126349 records in RAM.
INFO 2026-06-08 09:14:33 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,832
INFO 2026-06-08 09:14:33 MarkDuplicates Tracking 424555 as yet unmatched pairs. 148473 records in RAM.
INFO 2026-06-08 09:15:33 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 60s. Last read position: chr17:50,194,720
INFO 2026-06-08 09:15:33 MarkDuplicates Tracking 413603 as yet unmatched pairs. 137518 records in RAM.
INFO 2026-06-08 09:16:47 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 74s. Last read position: chr17:50,196,154
INFO 2026-06-08 09:16:47 MarkDuplicates Tracking 416638 as yet unmatched pairs. 140546 records in RAM.
INFO 2026-06-08 09:16:49 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,751
INFO 2026-06-08 09:16:49 MarkDuplicates Tracking 419031 as yet unmatched pairs. 142928 records in RAM.
INFO 2026-06-08 09:16:51 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,923
INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 387005 as yet unmatched pairs. 110895 records in RAM.
INFO 2026-06-08 09:16:53 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,463,127
INFO 2026-06-08 09:16:53 MarkDuplicates Tracking 376204 as yet unmatched pairs. 100089 records in RAM.
INFO 2026-06-08 09:16:54 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,676,369
INFO 2026-06-08 09:16:54 MarkDuplicates Tracking 374491 as yet unmatched pairs. 98369 records in RAM.
INFO 2026-06-08 09:16:56 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:51,160,009
INFO 2026-06-08 09:16:56 MarkDuplicates Tracking 376170 as yet unmatched pairs. 100037 records in RAM.
INFO 2026-06-08 09:16:58 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:57,105,807
INFO 2026-06-08 09:16:58 MarkDuplicates Tracking 366343 as yet unmatched pairs. 90194 records in RAM.
INFO 2026-06-08 09:17:00 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr17:59,644,286
INFO 2026-06-08 09:17:00 MarkDuplicates Tracking 378362 as yet unmatched pairs. 102202 records in RAM.
INFO 2026-06-08 09:17:01 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr17:59,666,885
INFO 2026-06-08 09:17:01 MarkDuplicates Tracking 375201 as yet unmatched pairs. 99041 records in RAM.
INFO 2026-06-08 09:17:03 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,525
INFO 2026-06-08 09:17:03 MarkDuplicates Tracking 370443 as yet unmatched pairs. 94277 records in RAM.
INFO 2026-06-08 09:17:05 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:60,868,650
INFO 2026-06-08 09:17:05 MarkDuplicates Tracking 356412 as yet unmatched pairs. 80235 records in RAM.
INFO 2026-06-08 09:17:06 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr17:63,471,713
INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 353162 as yet unmatched pairs. 76977 records in RAM.
INFO 2026-06-08 09:17:09 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr17:64,213,897
INFO 2026-06-08 09:17:09 MarkDuplicates Tracking 350784 as yet unmatched pairs. 74593 records in RAM.
INFO 2026-06-08 09:17:10 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr17:64,896,614
INFO 2026-06-08 09:17:10 MarkDuplicates Tracking 348037 as yet unmatched pairs. 71836 records in RAM.
INFO 2026-06-08 09:17:12 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:68,515,402
INFO 2026-06-08 09:17:12 MarkDuplicates Tracking 349912 as yet unmatched pairs. 73698 records in RAM.
INFO 2026-06-08 09:17:14 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:74,696,199
INFO 2026-06-08 09:17:14 MarkDuplicates Tracking 342590 as yet unmatched pairs. 66355 records in RAM.
INFO 2026-06-08 09:17:15 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr17:75,629,339
INFO 2026-06-08 09:17:15 MarkDuplicates Tracking 339468 as yet unmatched pairs. 63229 records in RAM.
INFO 2026-06-08 09:17:17 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:77,191,170
INFO 2026-06-08 09:17:17 MarkDuplicates Tracking 337062 as yet unmatched pairs. 60813 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr17:78,993,518
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 333639 as yet unmatched pairs. 57370 records in RAM.
INFO 2026-06-08 09:17:20 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:80,214,652
INFO 2026-06-08 09:17:20 MarkDuplicates Tracking 331758 as yet unmatched pairs. 55474 records in RAM.
INFO 2026-06-08 09:17:22 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr17:80,345,589
INFO 2026-06-08 09:17:22 MarkDuplicates Tracking 329701 as yet unmatched pairs. 53406 records in RAM.
INFO 2026-06-08 09:17:24 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 2s. Last read position: chr17:80,545,349
INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 324551 as yet unmatched pairs. 48250 records in RAM.
INFO 2026-06-08 09:17:26 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,962
INFO 2026-06-08 09:17:26 MarkDuplicates Tracking 324851 as yet unmatched pairs. 48543 records in RAM.
INFO 2026-06-08 09:17:28 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr17:81,707,163
INFO 2026-06-08 09:17:28 MarkDuplicates Tracking 321232 as yet unmatched pairs. 44915 records in RAM.
INFO 2026-06-08 09:17:30 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 2s. Last read position: chr17:81,855,172
INFO 2026-06-08 09:17:30 MarkDuplicates Tracking 327919 as yet unmatched pairs. 51600 records in RAM.
INFO 2026-06-08 09:17:32 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr17:81,933,213
INFO 2026-06-08 09:17:32 MarkDuplicates Tracking 316815 as yet unmatched pairs. 40487 records in RAM.
INFO 2026-06-08 09:17:33 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr17:82,036,571
INFO 2026-06-08 09:17:33 MarkDuplicates Tracking 314302 as yet unmatched pairs. 37958 records in RAM.
INFO 2026-06-08 09:17:35 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:82,079,193
INFO 2026-06-08 09:17:35 MarkDuplicates Tracking 321566 as yet unmatched pairs. 45218 records in RAM.
INFO 2026-06-08 09:17:37 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr17:82,081,650
INFO 2026-06-08 09:17:37 MarkDuplicates Tracking 321577 as yet unmatched pairs. 45223 records in RAM.
INFO 2026-06-08 09:17:39 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr17:82,083,836
INFO 2026-06-08 09:17:39 MarkDuplicates Tracking 331409 as yet unmatched pairs. 55051 records in RAM.
INFO 2026-06-08 09:17:40 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr17:82,085,280
INFO 2026-06-08 09:17:40 MarkDuplicates Tracking 309355 as yet unmatched pairs. 32989 records in RAM.
INFO 2026-06-08 09:17:42 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr17:82,087,156
INFO 2026-06-08 09:17:42 MarkDuplicates Tracking 316887 as yet unmatched pairs. 40515 records in RAM.
INFO 2026-06-08 09:17:44 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr17:82,088,988
INFO 2026-06-08 09:17:44 MarkDuplicates Tracking 305823 as yet unmatched pairs. 29447 records in RAM.
INFO 2026-06-08 09:17:45 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr17:82,091,525
INFO 2026-06-08 09:17:45 MarkDuplicates Tracking 309750 as yet unmatched pairs. 33373 records in RAM.
INFO 2026-06-08 09:17:47 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr17:82,095,338
INFO 2026-06-08 09:17:47 MarkDuplicates Tracking 300083 as yet unmatched pairs. 23699 records in RAM.
INFO 2026-06-08 09:17:49 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr17:82,519,945
INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 279111 as yet unmatched pairs. 2717 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr18:2,703,832
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 276555 as yet unmatched pairs. 16212 records in RAM.
INFO 2026-06-08 09:17:52 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr18:11,899,069
INFO 2026-06-08 09:17:52 MarkDuplicates Tracking 273370 as yet unmatched pairs. 13017 records in RAM.
INFO 2026-06-08 09:17:54 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr18:26,052,625
INFO 2026-06-08 09:17:54 MarkDuplicates Tracking 271896 as yet unmatched pairs. 11532 records in RAM.
INFO 2026-06-08 09:17:57 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 3s. Last read position: chr18:46,087,365
INFO 2026-06-08 09:17:57 MarkDuplicates Tracking 269831 as yet unmatched pairs. 9463 records in RAM.
INFO 2026-06-08 09:17:59 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr18:57,554,883
INFO 2026-06-08 09:17:59 MarkDuplicates Tracking 265824 as yet unmatched pairs. 5441 records in RAM.
INFO 2026-06-08 09:18:02 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 2s. Last read position: chr18:63,954,482
INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 262717 as yet unmatched pairs. 2326 records in RAM.
INFO 2026-06-08 09:18:05 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 2s. Last read position: chr19:582,562
INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 260563 as yet unmatched pairs. 106538 records in RAM.
INFO 2026-06-08 09:18:06 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:1,106,617
INFO 2026-06-08 09:18:06 MarkDuplicates Tracking 259861 as yet unmatched pairs. 105832 records in RAM.
INFO 2026-06-08 09:18:08 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:1,599,442
INFO 2026-06-08 09:18:08 MarkDuplicates Tracking 256185 as yet unmatched pairs. 102150 records in RAM.
INFO 2026-06-08 09:18:10 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:2,351,464
INFO 2026-06-08 09:18:10 MarkDuplicates Tracking 250308 as yet unmatched pairs. 96269 records in RAM.
INFO 2026-06-08 09:18:11 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:4,028,945
INFO 2026-06-08 09:18:11 MarkDuplicates Tracking 246314 as yet unmatched pairs. 92267 records in RAM.
INFO 2026-06-08 09:18:13 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:5,594,078
INFO 2026-06-08 09:18:13 MarkDuplicates Tracking 242898 as yet unmatched pairs. 88849 records in RAM.
INFO 2026-06-08 09:18:15 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:6,694,460
INFO 2026-06-08 09:18:15 MarkDuplicates Tracking 240222 as yet unmatched pairs. 86170 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:7,689,390
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 236708 as yet unmatched pairs. 82654 records in RAM.
INFO 2026-06-08 09:18:18 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:10,111,008
INFO 2026-06-08 09:18:18 MarkDuplicates Tracking 233736 as yet unmatched pairs. 79680 records in RAM.
INFO 2026-06-08 09:18:20 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:10,825,063
INFO 2026-06-08 09:18:20 MarkDuplicates Tracking 231379 as yet unmatched pairs. 77318 records in RAM.
INFO 2026-06-08 09:18:22 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr19:12,076,480
INFO 2026-06-08 09:18:22 MarkDuplicates Tracking 227997 as yet unmatched pairs. 73929 records in RAM.
INFO 2026-06-08 09:18:24 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:13,081,817
INFO 2026-06-08 09:18:24 MarkDuplicates Tracking 225218 as yet unmatched pairs. 71141 records in RAM.
INFO 2026-06-08 09:18:25 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,963
INFO 2026-06-08 09:18:25 MarkDuplicates Tracking 223956 as yet unmatched pairs. 69874 records in RAM.
INFO 2026-06-08 09:18:28 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 2s. Last read position: chr19:15,268,992
INFO 2026-06-08 09:18:28 MarkDuplicates Tracking 219152 as yet unmatched pairs. 65065 records in RAM.
INFO 2026-06-08 09:18:30 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr19:17,195,191
INFO 2026-06-08 09:18:30 MarkDuplicates Tracking 216405 as yet unmatched pairs. 62315 records in RAM.
INFO 2026-06-08 09:18:32 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:18,149,488
INFO 2026-06-08 09:18:32 MarkDuplicates Tracking 212535 as yet unmatched pairs. 58438 records in RAM.
INFO 2026-06-08 09:18:33 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr19:18,910,987
INFO 2026-06-08 09:18:33 MarkDuplicates Tracking 210625 as yet unmatched pairs. 56527 records in RAM.
INFO 2026-06-08 09:18:35 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr19:23,827,986
INFO 2026-06-08 09:18:35 MarkDuplicates Tracking 206349 as yet unmatched pairs. 52244 records in RAM.
INFO 2026-06-08 09:18:38 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 2s. Last read position: chr19:35,123,481
INFO 2026-06-08 09:18:38 MarkDuplicates Tracking 206113 as yet unmatched pairs. 52003 records in RAM.
INFO 2026-06-08 09:18:40 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:36,143,088
INFO 2026-06-08 09:18:40 MarkDuplicates Tracking 202752 as yet unmatched pairs. 48640 records in RAM.
INFO 2026-06-08 09:18:41 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:38,727,067
INFO 2026-06-08 09:18:41 MarkDuplicates Tracking 198093 as yet unmatched pairs. 43978 records in RAM.
INFO 2026-06-08 09:18:43 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:39,891,646
INFO 2026-06-08 09:18:43 MarkDuplicates Tracking 194667 as yet unmatched pairs. 40544 records in RAM.
INFO 2026-06-08 09:18:45 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:41,292,347
INFO 2026-06-08 09:18:45 MarkDuplicates Tracking 192008 as yet unmatched pairs. 37882 records in RAM.
INFO 2026-06-08 09:18:46 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:42,273,097
INFO 2026-06-08 09:18:46 MarkDuplicates Tracking 189449 as yet unmatched pairs. 35323 records in RAM.
INFO 2026-06-08 09:18:49 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 2s. Last read position: chr19:44,658,838
INFO 2026-06-08 09:18:49 MarkDuplicates Tracking 185555 as yet unmatched pairs. 31423 records in RAM.
INFO 2026-06-08 09:18:51 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:45,067,483
INFO 2026-06-08 09:18:51 MarkDuplicates Tracking 181730 as yet unmatched pairs. 27597 records in RAM.
INFO 2026-06-08 09:18:52 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:46,704,254
INFO 2026-06-08 09:18:52 MarkDuplicates Tracking 178595 as yet unmatched pairs. 24455 records in RAM.
INFO 2026-06-08 09:18:54 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr19:48,330,373
INFO 2026-06-08 09:18:54 MarkDuplicates Tracking 175697 as yet unmatched pairs. 21548 records in RAM.
INFO 2026-06-08 09:18:56 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:49,338,745
INFO 2026-06-08 09:18:56 MarkDuplicates Tracking 173126 as yet unmatched pairs. 18972 records in RAM.
INFO 2026-06-08 09:18:57 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:49,767,121
INFO 2026-06-08 09:18:57 MarkDuplicates Tracking 169468 as yet unmatched pairs. 15309 records in RAM.
INFO 2026-06-08 09:18:59 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:51,900,096
INFO 2026-06-08 09:18:59 MarkDuplicates Tracking 166256 as yet unmatched pairs. 12092 records in RAM.
INFO 2026-06-08 09:19:01 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:54,188,269
INFO 2026-06-08 09:19:01 MarkDuplicates Tracking 164118 as yet unmatched pairs. 9947 records in RAM.
INFO 2026-06-08 09:19:03 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:55,239,593
INFO 2026-06-08 09:19:03 MarkDuplicates Tracking 160797 as yet unmatched pairs. 6623 records in RAM.
INFO 2026-06-08 09:19:04 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr19:57,493,347
INFO 2026-06-08 09:19:04 MarkDuplicates Tracking 157638 as yet unmatched pairs. 3456 records in RAM.
INFO 2026-06-08 09:19:06 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 2s. Last read position: chr19:58,471,125
INFO 2026-06-08 09:19:06 MarkDuplicates Tracking 155219 as yet unmatched pairs. 1033 records in RAM.
INFO 2026-06-08 09:19:09 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 2s. Last read position: chr20:2,795,295
INFO 2026-06-08 09:19:09 MarkDuplicates Tracking 152183 as yet unmatched pairs. 36615 records in RAM.
INFO 2026-06-08 09:19:10 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr20:5,570,212
INFO 2026-06-08 09:19:10 MarkDuplicates Tracking 150760 as yet unmatched pairs. 35192 records in RAM.
INFO 2026-06-08 09:19:12 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr20:18,560,687
INFO 2026-06-08 09:19:12 MarkDuplicates Tracking 146868 as yet unmatched pairs. 31294 records in RAM.
INFO 2026-06-08 09:19:14 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr20:32,073,739
INFO 2026-06-08 09:19:14 MarkDuplicates Tracking 144024 as yet unmatched pairs. 28439 records in RAM.
INFO 2026-06-08 09:19:15 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr20:34,928,652
INFO 2026-06-08 09:19:15 MarkDuplicates Tracking 141042 as yet unmatched pairs. 25452 records in RAM.
INFO 2026-06-08 09:19:17 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr20:36,793,256
INFO 2026-06-08 09:19:17 MarkDuplicates Tracking 138698 as yet unmatched pairs. 23108 records in RAM.
INFO 2026-06-08 09:19:19 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr20:41,169,103
INFO 2026-06-08 09:19:19 MarkDuplicates Tracking 135780 as yet unmatched pairs. 20187 records in RAM.
INFO 2026-06-08 09:19:21 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr20:45,894,824
INFO 2026-06-08 09:19:21 MarkDuplicates Tracking 133889 as yet unmatched pairs. 18294 records in RAM.
INFO 2026-06-08 09:19:23 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 2s. Last read position: chr20:49,089,712
INFO 2026-06-08 09:19:23 MarkDuplicates Tracking 130469 as yet unmatched pairs. 14860 records in RAM.
INFO 2026-06-08 09:19:25 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr20:56,368,164
INFO 2026-06-08 09:19:25 MarkDuplicates Tracking 127302 as yet unmatched pairs. 11687 records in RAM.
INFO 2026-06-08 09:19:27 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr20:58,909,178
INFO 2026-06-08 09:19:27 MarkDuplicates Tracking 134505 as yet unmatched pairs. 18889 records in RAM.
INFO 2026-06-08 09:19:29 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr20:62,200,783
INFO 2026-06-08 09:19:29 MarkDuplicates Tracking 121440 as yet unmatched pairs. 5819 records in RAM.
INFO 2026-06-08 09:19:30 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr20:63,565,458
INFO 2026-06-08 09:19:30 MarkDuplicates Tracking 118494 as yet unmatched pairs. 2867 records in RAM.
INFO 2026-06-08 09:19:32 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr21:8,208,787
INFO 2026-06-08 09:19:32 MarkDuplicates Tracking 115054 as yet unmatched pairs. 21423 records in RAM.
INFO 2026-06-08 09:19:34 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,601
INFO 2026-06-08 09:19:34 MarkDuplicates Tracking 113477 as yet unmatched pairs. 19838 records in RAM.
INFO 2026-06-08 09:19:36 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr21:30,215,455
INFO 2026-06-08 09:19:36 MarkDuplicates Tracking 111072 as yet unmatched pairs. 17424 records in RAM.
INFO 2026-06-08 09:19:37 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr21:33,554,357
INFO 2026-06-08 09:19:37 MarkDuplicates Tracking 108583 as yet unmatched pairs. 14933 records in RAM.
INFO 2026-06-08 09:19:39 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr21:37,151,980
INFO 2026-06-08 09:19:39 MarkDuplicates Tracking 105835 as yet unmatched pairs. 12180 records in RAM.
INFO 2026-06-08 09:19:41 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr21:41,458,786
INFO 2026-06-08 09:19:41 MarkDuplicates Tracking 102555 as yet unmatched pairs. 8898 records in RAM.
INFO 2026-06-08 09:19:43 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr21:44,418,486
INFO 2026-06-08 09:19:43 MarkDuplicates Tracking 99313 as yet unmatched pairs. 5653 records in RAM.
INFO 2026-06-08 09:19:44 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr21:46,115,908
INFO 2026-06-08 09:19:44 MarkDuplicates Tracking 96987 as yet unmatched pairs. 3325 records in RAM.
INFO 2026-06-08 09:19:46 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 2s. Last read position: chr22:17,727,298
INFO 2026-06-08 09:19:46 MarkDuplicates Tracking 93204 as yet unmatched pairs. 44708 records in RAM.
INFO 2026-06-08 09:19:48 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 2s. Last read position: chr22:20,585,225
INFO 2026-06-08 09:19:48 MarkDuplicates Tracking 90937 as yet unmatched pairs. 42439 records in RAM.
INFO 2026-06-08 09:19:50 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr22:23,182,052
INFO 2026-06-08 09:19:50 MarkDuplicates Tracking 88044 as yet unmatched pairs. 39546 records in RAM.
INFO 2026-06-08 09:19:52 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 2s. Last read position: chr22:24,248,769
INFO 2026-06-08 09:19:52 MarkDuplicates Tracking 84382 as yet unmatched pairs. 35883 records in RAM.
INFO 2026-06-08 09:19:54 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,574
INFO 2026-06-08 09:19:54 MarkDuplicates Tracking 92094 as yet unmatched pairs. 43584 records in RAM.
INFO 2026-06-08 09:19:55 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,736
INFO 2026-06-08 09:19:55 MarkDuplicates Tracking 80276 as yet unmatched pairs. 31766 records in RAM.
INFO 2026-06-08 09:19:58 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 2s. Last read position: chr22:31,259,128
INFO 2026-06-08 09:19:58 MarkDuplicates Tracking 76238 as yet unmatched pairs. 27728 records in RAM.
INFO 2026-06-08 09:19:59 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr22:36,284,246
INFO 2026-06-08 09:19:59 MarkDuplicates Tracking 73765 as yet unmatched pairs. 25252 records in RAM.
INFO 2026-06-08 09:20:02 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 2s. Last read position: chr22:37,301,003
INFO 2026-06-08 09:20:02 MarkDuplicates Tracking 70428 as yet unmatched pairs. 21914 records in RAM.
INFO 2026-06-08 09:20:04 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr22:38,505,954
INFO 2026-06-08 09:20:04 MarkDuplicates Tracking 70446 as yet unmatched pairs. 21932 records in RAM.
INFO 2026-06-08 09:20:05 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr22:40,411,886
INFO 2026-06-08 09:20:05 MarkDuplicates Tracking 64826 as yet unmatched pairs. 16312 records in RAM.
INFO 2026-06-08 09:20:07 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr22:41,878,083
INFO 2026-06-08 09:20:07 MarkDuplicates Tracking 62452 as yet unmatched pairs. 13936 records in RAM.
INFO 2026-06-08 09:20:09 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr22:42,560,224
INFO 2026-06-08 09:20:09 MarkDuplicates Tracking 77299 as yet unmatched pairs. 28780 records in RAM.
INFO 2026-06-08 09:20:10 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chr22:46,095,258
INFO 2026-06-08 09:20:10 MarkDuplicates Tracking 56376 as yet unmatched pairs. 7857 records in RAM.
INFO 2026-06-08 09:20:12 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chr22:50,287,751
INFO 2026-06-08 09:20:12 MarkDuplicates Tracking 54840 as yet unmatched pairs. 6321 records in RAM.
INFO 2026-06-08 09:20:14 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr22:50,579,458
INFO 2026-06-08 09:20:14 MarkDuplicates Tracking 49965 as yet unmatched pairs. 1445 records in RAM.
INFO 2026-06-08 09:20:17 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 3s. Last read position: chrX:3,311,571
INFO 2026-06-08 09:20:17 MarkDuplicates Tracking 47266 as yet unmatched pairs. 44169 records in RAM.
INFO 2026-06-08 09:20:19 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chrX:12,976,815
INFO 2026-06-08 09:20:19 MarkDuplicates Tracking 46340 as yet unmatched pairs. 43242 records in RAM.
INFO 2026-06-08 09:20:21 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chrX:16,755,014
INFO 2026-06-08 09:20:21 MarkDuplicates Tracking 41336 as yet unmatched pairs. 38238 records in RAM.
INFO 2026-06-08 09:20:22 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chrX:30,320,931
INFO 2026-06-08 09:20:22 MarkDuplicates Tracking 38234 as yet unmatched pairs. 35135 records in RAM.
INFO 2026-06-08 09:20:24 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chrX:41,216,088
INFO 2026-06-08 09:20:24 MarkDuplicates Tracking 35899 as yet unmatched pairs. 32800 records in RAM.
INFO 2026-06-08 09:20:26 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chrX:47,206,394
INFO 2026-06-08 09:20:26 MarkDuplicates Tracking 35525 as yet unmatched pairs. 32426 records in RAM.
INFO 2026-06-08 09:20:29 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 2s. Last read position: chrX:49,033,751
INFO 2026-06-08 09:20:29 MarkDuplicates Tracking 31774 as yet unmatched pairs. 28675 records in RAM.
INFO 2026-06-08 09:20:30 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: chrX:53,432,367
INFO 2026-06-08 09:20:30 MarkDuplicates Tracking 28175 as yet unmatched pairs. 25076 records in RAM.
INFO 2026-06-08 09:20:32 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chrX:55,007,270
INFO 2026-06-08 09:20:32 MarkDuplicates Tracking 25718 as yet unmatched pairs. 22619 records in RAM.
INFO 2026-06-08 09:20:33 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chrX:68,193,908
INFO 2026-06-08 09:20:33 MarkDuplicates Tracking 22168 as yet unmatched pairs. 19069 records in RAM.
INFO 2026-06-08 09:20:35 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chrX:72,205,713
INFO 2026-06-08 09:20:35 MarkDuplicates Tracking 19621 as yet unmatched pairs. 16522 records in RAM.
INFO 2026-06-08 09:20:37 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 1s. Last read position: chrX:78,125,329
INFO 2026-06-08 09:20:37 MarkDuplicates Tracking 17812 as yet unmatched pairs. 14711 records in RAM.
INFO 2026-06-08 09:20:38 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chrX:111,726,945
INFO 2026-06-08 09:20:38 MarkDuplicates Tracking 14902 as yet unmatched pairs. 11801 records in RAM.
INFO 2026-06-08 09:20:40 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 1s. Last read position: chrX:125,685,926
INFO 2026-06-08 09:20:40 MarkDuplicates Tracking 12117 as yet unmatched pairs. 9016 records in RAM.
INFO 2026-06-08 09:20:42 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 1s. Last read position: chrX:151,955,059
INFO 2026-06-08 09:20:42 MarkDuplicates Tracking 9943 as yet unmatched pairs. 6842 records in RAM.
INFO 2026-06-08 09:20:45 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 2s. Last read position: chrX:154,354,150
INFO 2026-06-08 09:20:45 MarkDuplicates Tracking 7224 as yet unmatched pairs. 4123 records in RAM.
INFO 2026-06-08 09:20:46 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 1s. Last read position: chrX:154,764,926
INFO 2026-06-08 09:20:46 MarkDuplicates Tracking 3999 as yet unmatched pairs. 898 records in RAM.
INFO 2026-06-08 09:20:48 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 1s. Last read position: KI270711.1:18,232
INFO 2026-06-08 09:20:48 MarkDuplicates Tracking 1831 as yet unmatched pairs. 184 records in RAM.
INFO 2026-06-08 09:20:49 MarkDuplicates Read 633710687 records. 0 pairs never matched.
INFO 2026-06-08 09:21:43 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141088; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:21:43 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:21:48 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:21:48 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:22:07 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 09:22:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,320
INFO 2026-06-08 09:22:07 OpticalDuplicateFinder Large duplicate set. size = 1799
INFO 2026-06-08 09:22:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,521
INFO 2026-06-08 09:22:07 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-08 09:22:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,324
INFO 2026-06-08 09:22:13 OpticalDuplicateFinder Large duplicate set. size = 1505
INFO 2026-06-08 09:22:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,112
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,566
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,392
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1630
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,508
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1361
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,544
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 2096
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,614
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,045
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,103
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,568
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 2079
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,633
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,815
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1767
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,272
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,704
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1393
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,063
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,367
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,614
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1104
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,646
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1319
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,292
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,849
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,043
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,113
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,356
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,549
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1339
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,359
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,626
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,815
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,161
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1836
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,652
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 2662
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,985
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,635
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 2151
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,768
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,953
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1324
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,272
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,916
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,680
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1713
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,294
INFO 2026-06-08 09:22:37 OpticalDuplicateFinder Large duplicate set. size = 1359
INFO 2026-06-08 09:22:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,602
INFO 2026-06-08 09:22:38 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 09:22:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,221
INFO 2026-06-08 09:22:38 OpticalDuplicateFinder Large duplicate set. size = 1223
INFO 2026-06-08 09:22:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,735
INFO 2026-06-08 09:22:38 OpticalDuplicateFinder Large duplicate set. size = 1506
INFO 2026-06-08 09:22:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,182
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,765
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,609
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 2154
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,818
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,488
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 2323
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,721
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,861
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1883
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,506
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1992
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,220
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1843
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,828
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1821
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,564
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1227
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,271
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,195
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1662
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,794
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1537
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,960
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1258
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,219
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 2161
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,933
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,720
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 2422
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,168
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,621
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,591
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,121
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1387
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,706
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder Large duplicate set. size = 1287
INFO 2026-06-08 09:22:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,783
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder Large duplicate set. size = 1295
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,795
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,948
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder Large duplicate set. size = 1140
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,365
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder Large duplicate set. size = 1538
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,837
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder Large duplicate set. size = 2067
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,292
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,512
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder Large duplicate set. size = 2184
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,556
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,133
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder Large duplicate set. size = 1126
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,081
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder Large duplicate set. size = 1158
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,687
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 09:22:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,080
INFO 2026-06-08 09:23:14 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:23:14 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:24:18 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:24:19 MarkDuplicates After generateDuplicateIndexes freeMemory: 203918768; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:24:19 MarkDuplicates Marking 275838062 records as duplicates.
INFO 2026-06-08 09:24:19 MarkDuplicates Found 17787051 optical duplicate clusters.
INFO 2026-06-08 09:24:19 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:24:39 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:20s. Time for last 10,000,000: 20s. Last read position: chr1:25,456,828
INFO 2026-06-08 09:24:59 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:40s. Time for last 10,000,000: 19s. Last read position: chr1:53,015,024
INFO 2026-06-08 09:25:19 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:01:00s. Time for last 10,000,000: 20s. Last read position: chr1:120,825,524
INFO 2026-06-08 09:25:39 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:20s. Time for last 10,000,000: 19s. Last read position: chr1:156,136,009
INFO 2026-06-08 09:26:01 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:41s. Time for last 10,000,000: 21s. Last read position: chr1:205,616,585
INFO 2026-06-08 09:26:21 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:02:02s. Time for last 10,000,000: 20s. Last read position: chr2:26,127,863
INFO 2026-06-08 09:26:40 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:21s. Time for last 10,000,000: 19s. Last read position: chr2:61,878,911
INFO 2026-06-08 09:27:02 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:42s. Time for last 10,000,000: 21s. Last read position: chr2:113,942,301
INFO 2026-06-08 09:27:21 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:03:02s. Time for last 10,000,000: 19s. Last read position: chr2:208,324,208
INFO 2026-06-08 09:27:41 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:22s. Time for last 10,000,000: 19s. Last read position: chr2:229,789,603
INFO 2026-06-08 09:28:01 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:42s. Time for last 10,000,000: 19s. Last read position: chr3:45,594,982
INFO 2026-06-08 09:28:20 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:04:01s. Time for last 10,000,000: 18s. Last read position: chr3:121,695,361
INFO 2026-06-08 09:28:40 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:04:20s. Time for last 10,000,000: 19s. Last read position: chr3:195,523,692
INFO 2026-06-08 09:28:59 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:40s. Time for last 10,000,000: 19s. Last read position: chr4:82,356,795
INFO 2026-06-08 09:29:19 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:05:00s. Time for last 10,000,000: 19s. Last read position: chr5:16,681,391
INFO 2026-06-08 09:29:38 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:05:19s. Time for last 10,000,000: 19s. Last read position: chr5:122,808,288
INFO 2026-06-08 09:29:58 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:38s. Time for last 10,000,000: 19s. Last read position: chr5:150,405,127
INFO 2026-06-08 09:30:17 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:58s. Time for last 10,000,000: 19s. Last read position: chr5:179,823,907
INFO 2026-06-08 09:30:35 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:06:16s. Time for last 10,000,000: 18s. Last read position: chr6:31,829,081
INFO 2026-06-08 09:30:55 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:06:36s. Time for last 10,000,000: 19s. Last read position: chr6:82,365,919
INFO 2026-06-08 09:31:15 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:56s. Time for last 10,000,000: 19s. Last read position: chr7:5,528,321
INFO 2026-06-08 09:31:34 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:07:15s. Time for last 10,000,000: 19s. Last read position: chr7:92,016,234
INFO 2026-06-08 09:31:54 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:07:34s. Time for last 10,000,000: 19s. Last read position: chr7:139,374,409
INFO 2026-06-08 09:32:14 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:55s. Time for last 10,000,000: 20s. Last read position: chr8:42,048,600
INFO 2026-06-08 09:32:35 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:08:15s. Time for last 10,000,000: 20s. Last read position: chr8:109,334,393
INFO 2026-06-08 09:32:54 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:08:35s. Time for last 10,000,000: 19s. Last read position: chr8:143,862,316
INFO 2026-06-08 09:33:15 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:56s. Time for last 10,000,000: 20s. Last read position: chr8:144,791,881
INFO 2026-06-08 09:33:37 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:09:17s. Time for last 10,000,000: 21s. Last read position: chr9:121,141,494
INFO 2026-06-08 09:33:59 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 21s. Last read position: chr10:5,102,537
INFO 2026-06-08 09:34:20 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:10:01s. Time for last 10,000,000: 21s. Last read position: chr10:78,035,358
INFO 2026-06-08 09:34:41 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:10:22s. Time for last 10,000,000: 21s. Last read position: chr11:1,754,049
INFO 2026-06-08 09:35:02 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:10:43s. Time for last 10,000,000: 20s. Last read position: chr11:61,346,415
INFO 2026-06-08 09:35:22 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:11:03s. Time for last 10,000,000: 20s. Last read position: chr11:72,014,471
INFO 2026-06-08 09:35:43 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:11:24s. Time for last 10,000,000: 21s. Last read position: chr12:753,695
INFO 2026-06-08 09:36:05 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:11:46s. Time for last 10,000,000: 21s. Last read position: chr12:50,925,462
INFO 2026-06-08 09:36:26 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:12:07s. Time for last 10,000,000: 20s. Last read position: chr12:75,506,831
INFO 2026-06-08 09:36:46 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:12:27s. Time for last 10,000,000: 20s. Last read position: chr12:132,581,489
INFO 2026-06-08 09:37:06 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:12:47s. Time for last 10,000,000: 20s. Last read position: chr14:22,766,710
INFO 2026-06-08 09:37:28 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:13:09s. Time for last 10,000,000: 21s. Last read position: chr14:77,866,832
INFO 2026-06-08 09:37:49 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:13:30s. Time for last 10,000,000: 21s. Last read position: chr14:105,771,225
INFO 2026-06-08 09:38:10 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:13:51s. Time for last 10,000,000: 20s. Last read position: chr15:63,062,518
INFO 2026-06-08 09:38:31 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:14:12s. Time for last 10,000,000: 21s. Last read position: chr16:730,571
INFO 2026-06-08 09:38:53 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:14:33s. Time for last 10,000,000: 21s. Last read position: chr16:19,510,847
INFO 2026-06-08 09:39:14 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:14:55s. Time for last 10,000,000: 21s. Last read position: chr16:30,335,036
INFO 2026-06-08 09:39:34 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:15:15s. Time for last 10,000,000: 20s. Last read position: chr16:81,908,534
INFO 2026-06-08 09:39:55 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:15:36s. Time for last 10,000,000: 20s. Last read position: chr17:16,101,675
INFO 2026-06-08 09:40:16 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:15:57s. Time for last 10,000,000: 21s. Last read position: chr17:39,708,345
INFO 2026-06-08 09:40:39 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:16:20s. Time for last 10,000,000: 22s. Last read position: chr17:39,716,542
INFO 2026-06-08 09:41:00 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:16:41s. Time for last 10,000,000: 21s. Last read position: chr17:39,746,073
INFO 2026-06-08 09:41:24 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:17:05s. Time for last 10,000,000: 23s. Last read position: chr17:50,192,832
INFO 2026-06-08 09:41:45 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:17:26s. Time for last 10,000,000: 21s. Last read position: chr17:59,666,885
INFO 2026-06-08 09:42:07 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:17:48s. Time for last 10,000,000: 21s. Last read position: chr17:78,993,518
INFO 2026-06-08 09:42:28 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:18:09s. Time for last 10,000,000: 21s. Last read position: chr17:82,081,650
INFO 2026-06-08 09:42:50 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:18:31s. Time for last 10,000,000: 21s. Last read position: chr18:26,052,625