Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/e429cb1dc1f02cb5b7cdf4939e4840/659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/c1fbe88b58104059dc9bf10a09cf8d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/c1fbe88b58104059dc9bf10a09cf8d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/51245fe44ac7ff1f52b5e094f5a41f/659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (18812086) splicing reads. 285347 splicing junctions. 189848 known splicing junctions. 95499 novel splicing junctions.
sampling 10% (37624172) splicing reads. 356439 splicing junctions. 202563 known splicing junctions. 153876 novel splicing junctions.
sampling 15% (56436259) splicing reads. 407032 splicing junctions. 209368 known splicing junctions. 197664 novel splicing junctions.
sampling 20% (75248345) splicing reads. 446351 splicing junctions. 213714 known splicing junctions. 232637 novel splicing junctions.
sampling 25% (94060432) splicing reads. 478530 splicing junctions. 216839 known splicing junctions. 261691 novel splicing junctions.
sampling 30% (112872518) splicing reads. 505047 splicing junctions. 219215 known splicing junctions. 285832 novel splicing junctions.
sampling 35% (131684604) splicing reads. 527840 splicing junctions. 221126 known splicing junctions. 306714 novel splicing junctions.
sampling 40% (150496691) splicing reads. 546994 splicing junctions. 222584 known splicing junctions. 324410 novel splicing junctions.
sampling 45% (169308777) splicing reads. 563625 splicing junctions. 223865 known splicing junctions. 339760 novel splicing junctions.
sampling 50% (188120864) splicing reads. 578145 splicing junctions. 224940 known splicing junctions. 353205 novel splicing junctions.
sampling 55% (206932950) splicing reads. 591104 splicing junctions. 225871 known splicing junctions. 365233 novel splicing junctions.
sampling 60% (225745036) splicing reads. 602328 splicing junctions. 226563 known splicing junctions. 375765 novel splicing junctions.
sampling 65% (244557123) splicing reads. 612157 splicing junctions. 227184 known splicing junctions. 384973 novel splicing junctions.
sampling 70% (263369209) splicing reads. 620503 splicing junctions. 227717 known splicing junctions. 392786 novel splicing junctions.
sampling 75% (282181296) splicing reads. 628049 splicing junctions. 228197 known splicing junctions. 399852 novel splicing junctions.
sampling 80% (300993382) splicing reads. 634363 splicing junctions. 228622 known splicing junctions. 405741 novel splicing junctions.
sampling 85% (319805468) splicing reads. 639848 splicing junctions. 228968 known splicing junctions. 410880 novel splicing junctions.
sampling 90% (338617555) splicing reads. 644563 splicing junctions. 229243 known splicing junctions. 415320 novel splicing junctions.
sampling 95% (357429641) splicing reads. 648409 splicing junctions. 229481 known splicing junctions. 418928 novel splicing junctions.
sampling 100% (376241728) splicing reads. 651496 splicing junctions. 229685 known splicing junctions. 421811 novel splicing junctions.
null device 
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