Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/1a8098ad494c049c6fd20d5d8e685c/659_buD-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/282761f242c1af66bf830836a2f925/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/282761f242c1af66bf830836a2f925/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/8df73a6e798a091d16b00bc0149c15/659_buD-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 367261942
[W::hts_idx_load3] The index file is older than the data file: 659_buD-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	367261942
Known Splicing Events:	363586369
Partial Novel Splicing Events:	1887299
Novel Splicing Events:	1635529
Filtered Splicing Events:	152745

Total splicing  Junctions:	705181
Known Splicing Junctions:	294933
Partial Novel Splicing Junctions:	200918
Novel Splicing Junctions:	209330

===================================================================
Create BED file ...
Create Interact file ...