Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bTo-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bTo-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_bTo-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:58:33.444 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:58:33 GMT 2026] MarkDuplicates --INPUT 659_bTo-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bTo-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_bTo-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:58:33 GMT 2026] Executing as ?@nf-c756b2e884b791f7251da1ad2f108a99-f117d-8tzw6 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:58:33 MarkDuplicates Start of doWork freeMemory: 105492064; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:58:33 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:58:33 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,047,649
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 6506 as yet unmatched pairs. 2828 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,355,572
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 7449 as yet unmatched pairs. 243 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:2,504,056
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 11096 as yet unmatched pairs. 534 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:6,792,272
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 16844 as yet unmatched pairs. 2857 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:9,733,427
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 19459 as yet unmatched pairs. 2665 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:11,676,107
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 20916 as yet unmatched pairs. 1160 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:13,779,616
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 23049 as yet unmatched pairs. 377 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:16,969,326
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 25893 as yet unmatched pairs. 281 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:19,344,378
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 30996 as yet unmatched pairs. 2497 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:21,823,658
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 34816 as yet unmatched pairs. 3527 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:21,857,075
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 36155 as yet unmatched pairs. 1764 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:22,638,832
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 52851 as yet unmatched pairs. 15522 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:22,661,034
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 46409 as yet unmatched pairs. 6223 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:24,902,076
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 43121 as yet unmatched pairs. 224 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:26,863,446
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 51857 as yet unmatched pairs. 6202 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:27,879,976
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 49608 as yet unmatched pairs. 1048 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:31,426,671
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 53644 as yet unmatched pairs. 1929 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:32,194,920
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 55252 as yet unmatched pairs. 465 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:34,785,407
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 59137 as yet unmatched pairs. 1379 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:36,457,952
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 62414 as yet unmatched pairs. 1767 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:39,448,702
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 63720 as yet unmatched pairs. 336 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:42,683,403
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 71138 as yet unmatched pairs. 5008 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:43,569,710
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 71671 as yet unmatched pairs. 2443 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:44,803,938
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 73673 as yet unmatched pairs. 1299 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:51,403,476
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 75750 as yet unmatched pairs. 535 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:55,125,521
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 78461 as yet unmatched pairs. 498 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:66,963,126
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 81438 as yet unmatched pairs. 777 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:85,582,472
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 84822 as yet unmatched pairs. 1638 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:92,843,689
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 86061 as yet unmatched pairs. 352 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:100,275,673
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 88819 as yet unmatched pairs. 553 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:111,703,443
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 91439 as yet unmatched pairs. 443 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:116,393,532
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 94415 as yet unmatched pairs. 866 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:119,955,047
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 98711 as yet unmatched pairs. 2402 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:145,994,357
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 99401 as yet unmatched pairs. 1177 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:148,952,835
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 100227 as yet unmatched pairs. 704 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:150,072,189
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 101810 as yet unmatched pairs. 620 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:150,963,608
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 104238 as yet unmatched pairs. 192 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:153,561,389
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 118994 as yet unmatched pairs. 12384 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,634
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 127784 as yet unmatched pairs. 18391 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:154,584,612
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 112049 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:155,213,300
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 114965 as yet unmatched pairs. 213 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,115,157
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 122416 as yet unmatched pairs. 4542 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 3s. Last read position: chr1:156,137,665
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 136673 as yet unmatched pairs. 15549 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 4s. Last read position: chr1:156,910,332
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 124700 as yet unmatched pairs. 271 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:160,354,150
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 128244 as yet unmatched pairs. 1041 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:161,525,025
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 130835 as yet unmatched pairs. 762 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:167,415,541
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 132683 as yet unmatched pairs. 283 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:171,796,489
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 135312 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr1:180,884,017
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 138523 as yet unmatched pairs. 616 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:183,218,434
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 143007 as yet unmatched pairs. 2095 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:183,240,090
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 152098 as yet unmatched pairs. 8183 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:186,318,593
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 148652 as yet unmatched pairs. 2151 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:197,902,653
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 148935 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:201,812,592
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 153167 as yet unmatched pairs. 1503 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:203,865,083
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 155267 as yet unmatched pairs. 995 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 3s. Last read position: chr1:207,580,347
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 157019 as yet unmatched pairs. 402 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr1:209,625,867
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 170161 as yet unmatched pairs. 10495 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:211,372,171
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 162818 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:222,724,136
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 165687 as yet unmatched pairs. 282 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:226,889,021
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 168170 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr1:231,337,067
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 171245 as yet unmatched pairs. 162 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr1:243,126,332
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 174288 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 3s. Last read position: chr2:1,644,633
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 177623 as yet unmatched pairs. 176026 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr2:10,440,708
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 180490 as yet unmatched pairs. 178871 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:20,202,923
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 190274 as yet unmatched pairs. 188625 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:24,068,381
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 186330 as yet unmatched pairs. 184668 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 2s. Last read position: chr2:27,083,754
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 188843 as yet unmatched pairs. 187154 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:28,776,937
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 199208 as yet unmatched pairs. 197495 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,253
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 212854 as yet unmatched pairs. 190854 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 416335 as yet unmatched pairs. 180391 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 1113136 as yet unmatched pairs. 145534 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 1431670 as yet unmatched pairs. 129297 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 1438023 as yet unmatched pairs. 128971 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:36,477,062
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 1520597 as yet unmatched pairs. 125197 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:42,284,692
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 1518026 as yet unmatched pairs. 122597 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:46,382,429
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 1514704 as yet unmatched pairs. 119232 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:54,643,030
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 1511424 as yet unmatched pairs. 115906 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:55,636,366
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 1508398 as yet unmatched pairs. 112863 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:63,983,989
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 1505623 as yet unmatched pairs. 110067 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:70,276,734
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 1503617 as yet unmatched pairs. 108002 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:74,208,563
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 1502022 as yet unmatched pairs. 106376 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:85,046,141
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 1498398 as yet unmatched pairs. 102717 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:95,100,873
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 1495608 as yet unmatched pairs. 99885 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:99,360,262
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 1492848 as yet unmatched pairs. 97095 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:107,866,265
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 1490095 as yet unmatched pairs. 94280 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:108,783,780
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 1489367 as yet unmatched pairs. 93530 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:112,081,438
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 1486998 as yet unmatched pairs. 91134 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr2:113,957,349
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 1485252 as yet unmatched pairs. 89352 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:130,156,641
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 1482352 as yet unmatched pairs. 86397 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:144,403,980
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 1479762 as yet unmatched pairs. 83767 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:159,780,006
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 1477196 as yet unmatched pairs. 81156 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:170,387,267
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 1474120 as yet unmatched pairs. 78021 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:172,491,475
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 1477189 as yet unmatched pairs. 81054 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:178,553,221
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 1469162 as yet unmatched pairs. 72994 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:182,982,875
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 1468729 as yet unmatched pairs. 72538 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:188,994,233
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 1471798 as yet unmatched pairs. 75576 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:189,007,590
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 1473595 as yet unmatched pairs. 77332 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:189,088,731
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 1459273 as yet unmatched pairs. 62977 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:197,487,041
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 1456330 as yet unmatched pairs. 60001 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:203,144,687
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 1453252 as yet unmatched pairs. 56903 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,464
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 1484543 as yet unmatched pairs. 88155 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr2:215,365,564
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 1477005 as yet unmatched pairs. 80605 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr2:215,371,996
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 1490995 as yet unmatched pairs. 94590 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,365
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 1484022 as yet unmatched pairs. 87602 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,522
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 1487881 as yet unmatched pairs. 91458 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:215,380,817
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 1495603 as yet unmatched pairs. 99163 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,101
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 1458571 as yet unmatched pairs. 62118 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr2:215,391,695
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 1454857 as yet unmatched pairs. 58383 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr2:215,397,777
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 1444778 as yet unmatched pairs. 48296 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,124
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 1452103 as yet unmatched pairs. 55606 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,717
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 1444195 as yet unmatched pairs. 47690 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr2:215,420,737
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 1445841 as yet unmatched pairs. 49329 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr2:215,425,241
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 1438014 as yet unmatched pairs. 41495 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr2:215,434,723
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 1439896 as yet unmatched pairs. 43368 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr2:218,238,824
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 1418380 as yet unmatched pairs. 21818 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr2:219,283,132
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 1413342 as yet unmatched pairs. 16768 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr2:224,495,922
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 1409542 as yet unmatched pairs. 12939 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr2:231,460,171
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 1408808 as yet unmatched pairs. 12177 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr2:237,340,903
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 1405484 as yet unmatched pairs. 8823 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr2:237,763,831
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 1402988 as yet unmatched pairs. 6302 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr2:241,255,051
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 1398937 as yet unmatched pairs. 2227 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr3:9,914,452
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 1395201 as yet unmatched pairs. 82714 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:15,670,153
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 1392415 as yet unmatched pairs. 79896 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:37,054,475
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 1390054 as yet unmatched pairs. 77495 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr3:42,638,358
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 1387275 as yet unmatched pairs. 74684 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:47,872,000
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 1384733 as yet unmatched pairs. 72104 records in RAM.
INFO 2026-06-08 09:02:53 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr3:48,572,002
INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 1386053 as yet unmatched pairs. 73404 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 2s. Last read position: chr3:48,587,206
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 1381894 as yet unmatched pairs. 69230 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr3:49,032,653
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 1373810 as yet unmatched pairs. 61129 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr3:50,236,422
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 1373152 as yet unmatched pairs. 60451 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:52,504,777
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 1368907 as yet unmatched pairs. 56189 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:56,646,737
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 1365209 as yet unmatched pairs. 52470 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:64,686,847
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 1363390 as yet unmatched pairs. 50619 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:98,881,714
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 1361113 as yet unmatched pairs. 48300 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:101,659,939
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 1357411 as yet unmatched pairs. 44594 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:112,116,652
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 1354887 as yet unmatched pairs. 42032 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr3:121,633,118
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 1353124 as yet unmatched pairs. 40236 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr3:123,947,264
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 1349880 as yet unmatched pairs. 36961 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr3:127,032,434
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 1347952 as yet unmatched pairs. 35017 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:129,252,360
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 1344953 as yet unmatched pairs. 31989 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr3:132,511,195
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 1341036 as yet unmatched pairs. 28023 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr3:139,518,511
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 1343195 as yet unmatched pairs. 30152 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr3:149,140,137
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 1335646 as yet unmatched pairs. 22565 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr3:155,870,829
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 1332986 as yet unmatched pairs. 19881 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr3:169,127,988
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 1330075 as yet unmatched pairs. 16947 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr3:179,230,334
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 1328340 as yet unmatched pairs. 15169 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr3:184,174,925
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 1326446 as yet unmatched pairs. 13245 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr3:184,322,888
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 1323081 as yet unmatched pairs. 9869 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 2s. Last read position: chr3:188,341,656
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 1322168 as yet unmatched pairs. 8917 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr3:194,427,108
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 1318219 as yet unmatched pairs. 4933 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr3:197,027,837
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 1314757 as yet unmatched pairs. 1437 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr4:1,338,566
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 1312144 as yet unmatched pairs. 42559 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr4:2,928,223
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 1308661 as yet unmatched pairs. 39036 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr4:6,611,198
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 1306071 as yet unmatched pairs. 36428 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr4:10,077,394
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 1304976 as yet unmatched pairs. 35308 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr4:24,808,557
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 1299685 as yet unmatched pairs. 30004 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr4:39,327,658
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 1297585 as yet unmatched pairs. 27874 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr4:48,515,245
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 1294895 as yet unmatched pairs. 25142 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr4:57,110,212
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 1293736 as yet unmatched pairs. 23965 records in RAM.
INFO 2026-06-08 09:03:56 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr4:75,657,614
INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 1291043 as yet unmatched pairs. 21243 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr4:82,827,565
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 1287465 as yet unmatched pairs. 17648 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr4:88,739,029
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 1283891 as yet unmatched pairs. 14062 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr4:105,234,680
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 1281922 as yet unmatched pairs. 12067 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr4:121,668,411
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 1282251 as yet unmatched pairs. 12360 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr4:140,661,894
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 1276341 as yet unmatched pairs. 6438 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr4:154,540,841
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 1273885 as yet unmatched pairs. 3933 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr4:184,763,160
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 1272058 as yet unmatched pairs. 2078 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 2s. Last read position: chr5:1,501,485
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 1269049 as yet unmatched pairs. 63349 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:14,290,991
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 1269157 as yet unmatched pairs. 63422 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:14,481,274
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 1263746 as yet unmatched pairs. 58000 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:31,526,555
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 1260180 as yet unmatched pairs. 54415 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr5:37,479,914
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 1257930 as yet unmatched pairs. 52148 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:50,667,172
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 1255485 as yet unmatched pairs. 49667 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr5:67,166,629
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 1252741 as yet unmatched pairs. 46895 records in RAM.
INFO 2026-06-08 09:04:26 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr5:75,505,998
INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 1250655 as yet unmatched pairs. 44789 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr5:83,539,971
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 1248975 as yet unmatched pairs. 43089 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:98,899,567
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 1245563 as yet unmatched pairs. 39643 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:126,603,659
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 1243328 as yet unmatched pairs. 37342 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:135,010,510
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 1240253 as yet unmatched pairs. 34233 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:138,556,009
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 1237961 as yet unmatched pairs. 31922 records in RAM.
INFO 2026-06-08 09:04:37 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:141,246,210
INFO 2026-06-08 09:04:37 MarkDuplicates Tracking 1234909 as yet unmatched pairs. 28831 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr5:147,896,985
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 1232279 as yet unmatched pairs. 26183 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,040
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 1239417 as yet unmatched pairs. 33293 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,096
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 1249827 as yet unmatched pairs. 43691 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr5:150,648,555
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 1224891 as yet unmatched pairs. 18745 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr5:151,664,169
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 1225254 as yet unmatched pairs. 19076 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr5:167,876,001
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 1219236 as yet unmatched pairs. 13042 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr5:171,400,914
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 1218566 as yet unmatched pairs. 12344 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 3s. Last read position: chr5:177,332,120
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 1214772 as yet unmatched pairs. 8526 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr5:179,726,735
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 1213783 as yet unmatched pairs. 7506 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr5:180,792,627
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 1209059 as yet unmatched pairs. 2764 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr6:6,174,846
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 1206977 as yet unmatched pairs. 83942 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:7,580,435
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 1203717 as yet unmatched pairs. 80659 records in RAM.
INFO 2026-06-08 09:05:03 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:15,496,976
INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 1199340 as yet unmatched pairs. 76265 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:26,124,374
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 1199073 as yet unmatched pairs. 75969 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:27,831,390
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 1196662 as yet unmatched pairs. 73539 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:30,491,183
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 1192778 as yet unmatched pairs. 69633 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:30,899,170
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 1189671 as yet unmatched pairs. 66508 records in RAM.
INFO 2026-06-08 09:05:12 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:31,632,042
INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 1186193 as yet unmatched pairs. 63017 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,197
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 1183212 as yet unmatched pairs. 60013 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr6:31,828,959
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 1183558 as yet unmatched pairs. 60357 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 2s. Last read position: chr6:32,084,573
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 1179378 as yet unmatched pairs. 56166 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:32,972,818
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 1177038 as yet unmatched pairs. 53799 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:33,414,724
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 1175306 as yet unmatched pairs. 52046 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:35,470,222
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 1171488 as yet unmatched pairs. 48219 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:41,638,355
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 1169076 as yet unmatched pairs. 45770 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 2s. Last read position: chr6:43,225,789
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 1165546 as yet unmatched pairs. 42218 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:44,253,515
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 1165000 as yet unmatched pairs. 41658 records in RAM.
INFO 2026-06-08 09:05:31 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr6:56,605,862
INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 1159877 as yet unmatched pairs. 36476 records in RAM.
INFO 2026-06-08 09:05:33 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:56,639,942
INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 1162963 as yet unmatched pairs. 39551 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr6:75,119,062
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 1154691 as yet unmatched pairs. 31249 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr6:85,536,827
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 1152071 as yet unmatched pairs. 28605 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr6:106,099,355
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 1149731 as yet unmatched pairs. 26228 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr6:111,390,087
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 1146725 as yet unmatched pairs. 23186 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr6:121,447,368
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 1146153 as yet unmatched pairs. 22593 records in RAM.
INFO 2026-06-08 09:05:45 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr6:135,394,861
INFO 2026-06-08 09:05:45 MarkDuplicates Tracking 1141295 as yet unmatched pairs. 17702 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr6:142,761,532
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 1138749 as yet unmatched pairs. 15149 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr6:150,865,939
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 1136034 as yet unmatched pairs. 12405 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr6:157,207,326
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 1133738 as yet unmatched pairs. 10095 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr6:158,789,361
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 1130727 as yet unmatched pairs. 7064 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr6:161,097,082
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 1128589 as yet unmatched pairs. 4897 records in RAM.
INFO 2026-06-08 09:05:55 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr6:169,237,733
INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 1128092 as yet unmatched pairs. 4382 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr7:1,475,945
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 1122827 as yet unmatched pairs. 91578 records in RAM.
INFO 2026-06-08 09:06:00 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:4,682,669
INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 1119278 as yet unmatched pairs. 87995 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr7:5,527,865
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 1138470 as yet unmatched pairs. 107162 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,699
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 1126185 as yet unmatched pairs. 94860 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr7:5,605,317
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 1112719 as yet unmatched pairs. 81368 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:17,299,242
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 1108066 as yet unmatched pairs. 76694 records in RAM.
INFO 2026-06-08 09:06:10 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:26,192,219
INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 1106684 as yet unmatched pairs. 75292 records in RAM.
INFO 2026-06-08 09:06:12 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr7:32,975,265
INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 1103278 as yet unmatched pairs. 71859 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:42,223,160
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 1099209 as yet unmatched pairs. 67764 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 2s. Last read position: chr7:44,572,980
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 1096592 as yet unmatched pairs. 65133 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr7:48,276,023
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 1093893 as yet unmatched pairs. 62415 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr7:55,146,651
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 1124022 as yet unmatched pairs. 92526 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr7:55,157,677
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 1103157 as yet unmatched pairs. 71649 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr7:55,173,967
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 1108778 as yet unmatched pairs. 77266 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 2s. Last read position: chr7:55,201,264
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 1104571 as yet unmatched pairs. 73049 records in RAM.
INFO 2026-06-08 09:06:28 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 2s. Last read position: chr7:66,082,878
INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 1079333 as yet unmatched pairs. 47788 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr7:74,224,183
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 1076871 as yet unmatched pairs. 45301 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,819
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 1088454 as yet unmatched pairs. 56864 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr7:77,627,161
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 1072557 as yet unmatched pairs. 40933 records in RAM.
INFO 2026-06-08 09:06:35 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr7:92,319,345
INFO 2026-06-08 09:06:35 MarkDuplicates Tracking 1069634 as yet unmatched pairs. 37999 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr7:94,415,225
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 1071390 as yet unmatched pairs. 39731 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 64s. Last read position: chr7:95,592,885
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 1065566 as yet unmatched pairs. 33872 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 2s. Last read position: chr7:100,111,283
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 1060719 as yet unmatched pairs. 29001 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr7:101,128,492
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 1069574 as yet unmatched pairs. 37826 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr7:102,510,179
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 1054999 as yet unmatched pairs. 23218 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr7:106,660,234
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 1052845 as yet unmatched pairs. 21036 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr7:116,558,967
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 1053133 as yet unmatched pairs. 21311 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr7:127,591,022
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 1048922 as yet unmatched pairs. 17081 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr7:128,754,406
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 1046049 as yet unmatched pairs. 14195 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr7:135,626,292
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 1042551 as yet unmatched pairs. 10657 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr7:141,743,598
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 1040537 as yet unmatched pairs. 8631 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr7:149,004,097
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 1040043 as yet unmatched pairs. 8117 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr7:151,467,187
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 1035838 as yet unmatched pairs. 3904 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 2s. Last read position: chr8:9,556,263
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 1031659 as yet unmatched pairs. 64794 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 3s. Last read position: chr8:17,543,347
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 1028889 as yet unmatched pairs. 62014 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr8:23,028,339
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 1026467 as yet unmatched pairs. 59571 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr8:30,703,203
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 1023343 as yet unmatched pairs. 56434 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr8:38,842,435
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 1021865 as yet unmatched pairs. 54935 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr8:47,830,711
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 1017556 as yet unmatched pairs. 50611 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr8:56,074,082
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 1019847 as yet unmatched pairs. 52880 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr8:67,276,096
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 1012729 as yet unmatched pairs. 45735 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 2s. Last read position: chr8:81,478,813
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 1010647 as yet unmatched pairs. 43627 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr8:96,309,575
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 1008464 as yet unmatched pairs. 41414 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:100,709,697
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 1012857 as yet unmatched pairs. 45792 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr8:102,651,332
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 1003193 as yet unmatched pairs. 36112 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr8:116,856,253
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 1000126 as yet unmatched pairs. 33029 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr8:124,539,178
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 997131 as yet unmatched pairs. 30006 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr8:132,798,791
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 994450 as yet unmatched pairs. 27296 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr8:133,264,558
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 1011255 as yet unmatched pairs. 44081 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr8:143,440,211
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 988331 as yet unmatched pairs. 21134 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,527
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 984734 as yet unmatched pairs. 17516 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,917,646
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 990713 as yet unmatched pairs. 23491 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr8:143,921,998
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 979524 as yet unmatched pairs. 12293 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr8:143,932,427
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 977858 as yet unmatched pairs. 10605 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr8:144,243,889
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 971582 as yet unmatched pairs. 4316 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr8:144,791,384
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 969845 as yet unmatched pairs. 2548 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 2s. Last read position: chr9:19,116,350
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 966813 as yet unmatched pairs. 59492 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr9:33,278,135
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 963547 as yet unmatched pairs. 56201 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr9:35,555,497
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 960507 as yet unmatched pairs. 53140 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 2s. Last read position: chr9:35,708,347
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 959778 as yet unmatched pairs. 52394 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr9:35,812,964
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 953768 as yet unmatched pairs. 46373 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr9:65,289,704
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 951150 as yet unmatched pairs. 43737 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr9:77,276,165
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 949200 as yet unmatched pairs. 41773 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr9:89,112,567
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 946405 as yet unmatched pairs. 38958 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr9:96,488,227
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 943751 as yet unmatched pairs. 36289 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr9:100,442,322
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 940914 as yet unmatched pairs. 33420 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr9:110,244,776
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 943983 as yet unmatched pairs. 36471 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 3s. Last read position: chr9:114,310,980
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 934959 as yet unmatched pairs. 27438 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr9:115,076,032
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 935038 as yet unmatched pairs. 27505 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr9:120,923,727
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 929903 as yet unmatched pairs. 22339 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr9:124,257,981
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 927078 as yet unmatched pairs. 19487 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr9:127,843,185
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 924821 as yet unmatched pairs. 17204 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr9:129,111,586
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 921763 as yet unmatched pairs. 14139 records in RAM.
INFO 2026-06-08 09:09:22 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr9:132,326,904
INFO 2026-06-08 09:09:22 MarkDuplicates Tracking 918537 as yet unmatched pairs. 10892 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr9:134,758,254
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 916945 as yet unmatched pairs. 9286 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr9:136,443,736
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 912204 as yet unmatched pairs. 4519 records in RAM.
INFO 2026-06-08 09:09:29 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr9:137,256,065
INFO 2026-06-08 09:09:29 MarkDuplicates Tracking 908686 as yet unmatched pairs. 986 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 2s. Last read position: chr10:5,456,838
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 906273 as yet unmatched pairs. 57579 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr10:12,014,089
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 902935 as yet unmatched pairs. 54212 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr10:17,872,104
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 901090 as yet unmatched pairs. 52356 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr10:27,504,412
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 899683 as yet unmatched pairs. 50928 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr10:32,037,305
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 898641 as yet unmatched pairs. 49864 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr10:32,930,014
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 910314 as yet unmatched pairs. 61515 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr10:45,975,460
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 890472 as yet unmatched pairs. 41652 records in RAM.
INFO 2026-06-08 09:09:43 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr10:49,932,141
INFO 2026-06-08 09:09:43 MarkDuplicates Tracking 888219 as yet unmatched pairs. 39376 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr10:68,742,472
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 886207 as yet unmatched pairs. 37344 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr10:72,274,279
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 888128 as yet unmatched pairs. 39236 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr10:73,912,958
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 881344 as yet unmatched pairs. 32435 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr10:79,306,143
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 877524 as yet unmatched pairs. 28576 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr10:88,935,237
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 874988 as yet unmatched pairs. 26022 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr10:95,237,991
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 874651 as yet unmatched pairs. 25673 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr10:97,714,107
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 871364 as yet unmatched pairs. 22369 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr10:102,141,705
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 867149 as yet unmatched pairs. 18140 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr10:103,898,877
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 863789 as yet unmatched pairs. 14762 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr10:104,053,030
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 862795 as yet unmatched pairs. 13753 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr10:110,502,967
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 858222 as yet unmatched pairs. 9159 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr10:119,108,118
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 855452 as yet unmatched pairs. 6378 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr10:124,706,636
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 852898 as yet unmatched pairs. 3807 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 3s. Last read position: chr10:133,273,987
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 850084 as yet unmatched pairs. 972 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 2s. Last read position: chr11:319,943
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 878415 as yet unmatched pairs. 142715 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:726,346
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 844044 as yet unmatched pairs. 108332 records in RAM.
INFO 2026-06-08 09:10:16 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:1,761,308
INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 849104 as yet unmatched pairs. 113375 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:6,223,654
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 837923 as yet unmatched pairs. 102168 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:9,286,549
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 835077 as yet unmatched pairs. 99311 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr11:10,803,064
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 836758 as yet unmatched pairs. 100982 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:14,869,480
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 829024 as yet unmatched pairs. 93235 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:27,372,369
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 826598 as yet unmatched pairs. 90790 records in RAM.
INFO 2026-06-08 09:10:26 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr11:35,139,242
INFO 2026-06-08 09:10:26 MarkDuplicates Tracking 829575 as yet unmatched pairs. 93749 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 2s. Last read position: chr11:44,126,807
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 822321 as yet unmatched pairs. 86473 records in RAM.
INFO 2026-06-08 09:10:31 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:47,288,803
INFO 2026-06-08 09:10:31 MarkDuplicates Tracking 818417 as yet unmatched pairs. 82554 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr11:57,332,231
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 816376 as yet unmatched pairs. 80504 records in RAM.
INFO 2026-06-08 09:10:34 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:59,639,082
INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 813149 as yet unmatched pairs. 77269 records in RAM.
INFO 2026-06-08 09:10:36 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr11:61,350,995
INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 810859 as yet unmatched pairs. 74964 records in RAM.
INFO 2026-06-08 09:10:38 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,046
INFO 2026-06-08 09:10:38 MarkDuplicates Tracking 810236 as yet unmatched pairs. 74326 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr11:62,524,956
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 807499 as yet unmatched pairs. 71581 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr11:62,531,111
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 806925 as yet unmatched pairs. 70999 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr11:62,629,846
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 801181 as yet unmatched pairs. 65249 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr11:63,839,363
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 796924 as yet unmatched pairs. 60978 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 3s. Last read position: chr11:64,317,118
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 796602 as yet unmatched pairs. 60641 records in RAM.
INFO 2026-06-08 09:10:50 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr11:65,108,211
INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 791042 as yet unmatched pairs. 55069 records in RAM.
INFO 2026-06-08 09:10:52 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:65,552,385
INFO 2026-06-08 09:10:52 MarkDuplicates Tracking 788542 as yet unmatched pairs. 52480 records in RAM.
INFO 2026-06-08 09:10:54 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr11:65,658,214
INFO 2026-06-08 09:10:54 MarkDuplicates Tracking 787216 as yet unmatched pairs. 51147 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr11:66,061,694
INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 781978 as yet unmatched pairs. 45897 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr11:66,844,897
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 778255 as yet unmatched pairs. 42160 records in RAM.
INFO 2026-06-08 09:11:00 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr11:67,498,256
INFO 2026-06-08 09:11:00 MarkDuplicates Tracking 775355 as yet unmatched pairs. 39250 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr11:69,079,838
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 771683 as yet unmatched pairs. 35567 records in RAM.
INFO 2026-06-08 09:11:04 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr11:70,435,915
INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 768598 as yet unmatched pairs. 32479 records in RAM.
INFO 2026-06-08 09:11:05 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr11:72,726,773
INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 766508 as yet unmatched pairs. 30349 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr11:75,404,028
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 766986 as yet unmatched pairs. 30816 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr11:78,073,086
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 761968 as yet unmatched pairs. 25784 records in RAM.
INFO 2026-06-08 09:11:11 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr11:88,293,993
INFO 2026-06-08 09:11:11 MarkDuplicates Tracking 761459 as yet unmatched pairs. 25252 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr11:96,341,635
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 755432 as yet unmatched pairs. 19203 records in RAM.
INFO 2026-06-08 09:11:15 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr11:102,795,581
INFO 2026-06-08 09:11:15 MarkDuplicates Tracking 754334 as yet unmatched pairs. 18103 records in RAM.
INFO 2026-06-08 09:11:17 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr11:114,253,052
INFO 2026-06-08 09:11:17 MarkDuplicates Tracking 749574 as yet unmatched pairs. 13329 records in RAM.
INFO 2026-06-08 09:11:19 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr11:118,584,589
INFO 2026-06-08 09:11:19 MarkDuplicates Tracking 747671 as yet unmatched pairs. 11416 records in RAM.
INFO 2026-06-08 09:11:21 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr11:119,335,144
INFO 2026-06-08 09:11:21 MarkDuplicates Tracking 744932 as yet unmatched pairs. 8663 records in RAM.
INFO 2026-06-08 09:11:23 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr11:123,058,791
INFO 2026-06-08 09:11:23 MarkDuplicates Tracking 742942 as yet unmatched pairs. 6668 records in RAM.
INFO 2026-06-08 09:11:25 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr11:128,936,619
INFO 2026-06-08 09:11:25 MarkDuplicates Tracking 738615 as yet unmatched pairs. 2336 records in RAM.
INFO 2026-06-08 09:11:27 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 2s. Last read position: chr12:754,218
INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 736618 as yet unmatched pairs. 97373 records in RAM.
INFO 2026-06-08 09:11:29 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr12:5,967,491
INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 733573 as yet unmatched pairs. 94300 records in RAM.
INFO 2026-06-08 09:11:31 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr12:6,537,100
INFO 2026-06-08 09:11:31 MarkDuplicates Tracking 735203 as yet unmatched pairs. 95920 records in RAM.
INFO 2026-06-08 09:11:33 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr12:6,872,796
INFO 2026-06-08 09:11:33 MarkDuplicates Tracking 727567 as yet unmatched pairs. 88269 records in RAM.
INFO 2026-06-08 09:11:36 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr12:7,479,953
INFO 2026-06-08 09:11:36 MarkDuplicates Tracking 728166 as yet unmatched pairs. 88862 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr12:9,070,497
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 722626 as yet unmatched pairs. 83314 records in RAM.
INFO 2026-06-08 09:11:39 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:13,213,799
INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 720438 as yet unmatched pairs. 81088 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:26,974,038
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 717086 as yet unmatched pairs. 77724 records in RAM.
INFO 2026-06-08 09:11:42 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:42,161,706
INFO 2026-06-08 09:11:42 MarkDuplicates Tracking 714336 as yet unmatched pairs. 74963 records in RAM.
INFO 2026-06-08 09:11:44 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:47,785,853
INFO 2026-06-08 09:11:44 MarkDuplicates Tracking 712307 as yet unmatched pairs. 72919 records in RAM.
INFO 2026-06-08 09:11:46 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,258
INFO 2026-06-08 09:11:46 MarkDuplicates Tracking 719812 as yet unmatched pairs. 80417 records in RAM.
INFO 2026-06-08 09:11:48 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr12:49,558,922
INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 706760 as yet unmatched pairs. 67363 records in RAM.
INFO 2026-06-08 09:11:50 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr12:51,240,898
INFO 2026-06-08 09:11:50 MarkDuplicates Tracking 705210 as yet unmatched pairs. 65798 records in RAM.
INFO 2026-06-08 09:11:51 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr12:52,487,679
INFO 2026-06-08 09:11:51 MarkDuplicates Tracking 717468 as yet unmatched pairs. 78055 records in RAM.
INFO 2026-06-08 09:11:53 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr12:52,491,659
INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 713533 as yet unmatched pairs. 74099 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr12:52,515,218
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 718763 as yet unmatched pairs. 79310 records in RAM.
INFO 2026-06-08 09:11:56 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr12:52,519,973
INFO 2026-06-08 09:11:56 MarkDuplicates Tracking 711605 as yet unmatched pairs. 72139 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr12:53,446,032
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 692202 as yet unmatched pairs. 52733 records in RAM.
INFO 2026-06-08 09:12:00 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr12:54,399,697
INFO 2026-06-08 09:12:00 MarkDuplicates Tracking 693813 as yet unmatched pairs. 54327 records in RAM.
INFO 2026-06-08 09:12:02 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr12:55,837,067
INFO 2026-06-08 09:12:02 MarkDuplicates Tracking 687866 as yet unmatched pairs. 48373 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr12:56,254,892
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 683765 as yet unmatched pairs. 44266 records in RAM.
INFO 2026-06-08 09:12:05 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr12:57,092,556
INFO 2026-06-08 09:12:05 MarkDuplicates Tracking 682496 as yet unmatched pairs. 42990 records in RAM.
INFO 2026-06-08 09:12:07 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr12:57,178,484
INFO 2026-06-08 09:12:07 MarkDuplicates Tracking 678875 as yet unmatched pairs. 39357 records in RAM.
INFO 2026-06-08 09:12:08 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr12:57,526,951
INFO 2026-06-08 09:12:08 MarkDuplicates Tracking 675291 as yet unmatched pairs. 35759 records in RAM.
INFO 2026-06-08 09:12:10 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr12:64,743,141
INFO 2026-06-08 09:12:10 MarkDuplicates Tracking 673301 as yet unmatched pairs. 33761 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr12:71,755,206
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 670132 as yet unmatched pairs. 30566 records in RAM.
INFO 2026-06-08 09:12:15 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr12:91,104,224
INFO 2026-06-08 09:12:15 MarkDuplicates Tracking 668955 as yet unmatched pairs. 29376 records in RAM.
INFO 2026-06-08 09:12:16 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr12:98,516,033
INFO 2026-06-08 09:12:16 MarkDuplicates Tracking 665009 as yet unmatched pairs. 25419 records in RAM.
INFO 2026-06-08 09:12:18 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr12:103,946,670
INFO 2026-06-08 09:12:18 MarkDuplicates Tracking 669233 as yet unmatched pairs. 29632 records in RAM.
INFO 2026-06-08 09:12:20 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr12:108,535,426
INFO 2026-06-08 09:12:20 MarkDuplicates Tracking 660026 as yet unmatched pairs. 20415 records in RAM.
INFO 2026-06-08 09:12:21 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr12:110,538,202
INFO 2026-06-08 09:12:21 MarkDuplicates Tracking 657447 as yet unmatched pairs. 17824 records in RAM.
INFO 2026-06-08 09:12:23 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr12:113,287,017
INFO 2026-06-08 09:12:23 MarkDuplicates Tracking 654819 as yet unmatched pairs. 15183 records in RAM.
INFO 2026-06-08 09:12:25 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr12:120,198,603
INFO 2026-06-08 09:12:25 MarkDuplicates Tracking 653027 as yet unmatched pairs. 13359 records in RAM.
INFO 2026-06-08 09:12:27 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr12:122,130,851
INFO 2026-06-08 09:12:27 MarkDuplicates Tracking 649466 as yet unmatched pairs. 9787 records in RAM.
INFO 2026-06-08 09:12:30 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 3s. Last read position: chr12:124,012,411
INFO 2026-06-08 09:12:30 MarkDuplicates Tracking 646042 as yet unmatched pairs. 6353 records in RAM.
INFO 2026-06-08 09:12:32 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr12:130,954,143
INFO 2026-06-08 09:12:32 MarkDuplicates Tracking 642902 as yet unmatched pairs. 3203 records in RAM.
INFO 2026-06-08 09:12:34 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr13:19,650,118
INFO 2026-06-08 09:12:34 MarkDuplicates Tracking 639754 as yet unmatched pairs. 25216 records in RAM.
INFO 2026-06-08 09:12:35 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr13:21,376,644
INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 638204 as yet unmatched pairs. 23660 records in RAM.
INFO 2026-06-08 09:12:37 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr13:32,688,455
INFO 2026-06-08 09:12:37 MarkDuplicates Tracking 634655 as yet unmatched pairs. 20082 records in RAM.
INFO 2026-06-08 09:12:39 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr13:42,299,703
INFO 2026-06-08 09:12:39 MarkDuplicates Tracking 632522 as yet unmatched pairs. 17920 records in RAM.
INFO 2026-06-08 09:12:41 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr13:52,015,818
INFO 2026-06-08 09:12:41 MarkDuplicates Tracking 629649 as yet unmatched pairs. 15030 records in RAM.
INFO 2026-06-08 09:12:42 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr13:87,678,153
INFO 2026-06-08 09:12:42 MarkDuplicates Tracking 626792 as yet unmatched pairs. 12160 records in RAM.
INFO 2026-06-08 09:12:44 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr13:102,868,172
INFO 2026-06-08 09:12:44 MarkDuplicates Tracking 624231 as yet unmatched pairs. 9575 records in RAM.
INFO 2026-06-08 09:12:46 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr13:110,209,408
INFO 2026-06-08 09:12:46 MarkDuplicates Tracking 628176 as yet unmatched pairs. 13502 records in RAM.
INFO 2026-06-08 09:12:48 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr13:110,506,521
INFO 2026-06-08 09:12:48 MarkDuplicates Tracking 622743 as yet unmatched pairs. 8063 records in RAM.
INFO 2026-06-08 09:12:49 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr13:114,304,829
INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 614814 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 09:12:52 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr14:22,770,229
INFO 2026-06-08 09:12:52 MarkDuplicates Tracking 612585 as yet unmatched pairs. 53673 records in RAM.
INFO 2026-06-08 09:12:54 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr14:23,137,967
INFO 2026-06-08 09:12:54 MarkDuplicates Tracking 610454 as yet unmatched pairs. 51535 records in RAM.
INFO 2026-06-08 09:12:56 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr14:24,368,257
INFO 2026-06-08 09:12:56 MarkDuplicates Tracking 606297 as yet unmatched pairs. 47372 records in RAM.
INFO 2026-06-08 09:12:58 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 2s. Last read position: chr14:35,308,922
INFO 2026-06-08 09:12:58 MarkDuplicates Tracking 605672 as yet unmatched pairs. 46727 records in RAM.
INFO 2026-06-08 09:13:02 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 3s. Last read position: chr14:49,894,075
INFO 2026-06-08 09:13:02 MarkDuplicates Tracking 602802 as yet unmatched pairs. 43790 records in RAM.
INFO 2026-06-08 09:13:03 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr14:54,427,791
INFO 2026-06-08 09:13:03 MarkDuplicates Tracking 598540 as yet unmatched pairs. 39517 records in RAM.
INFO 2026-06-08 09:13:05 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr14:60,114,988
INFO 2026-06-08 09:13:05 MarkDuplicates Tracking 596035 as yet unmatched pairs. 36997 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr14:64,212,841
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 593438 as yet unmatched pairs. 34397 records in RAM.
INFO 2026-06-08 09:13:08 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr14:68,877,165
INFO 2026-06-08 09:13:08 MarkDuplicates Tracking 595988 as yet unmatched pairs. 36937 records in RAM.
INFO 2026-06-08 09:13:10 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr14:71,108,755
INFO 2026-06-08 09:13:10 MarkDuplicates Tracking 588037 as yet unmatched pairs. 28974 records in RAM.
INFO 2026-06-08 09:13:12 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr14:74,799,068
INFO 2026-06-08 09:13:12 MarkDuplicates Tracking 584729 as yet unmatched pairs. 25654 records in RAM.
INFO 2026-06-08 09:13:13 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr14:81,277,277
INFO 2026-06-08 09:13:13 MarkDuplicates Tracking 582382 as yet unmatched pairs. 23291 records in RAM.
INFO 2026-06-08 09:13:15 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr14:92,714,386
INFO 2026-06-08 09:13:15 MarkDuplicates Tracking 580337 as yet unmatched pairs. 21237 records in RAM.
INFO 2026-06-08 09:13:17 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr14:99,458,388
INFO 2026-06-08 09:13:17 MarkDuplicates Tracking 576825 as yet unmatched pairs. 17714 records in RAM.
INFO 2026-06-08 09:13:18 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr14:102,081,741
INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 575424 as yet unmatched pairs. 16298 records in RAM.
INFO 2026-06-08 09:13:20 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr14:104,707,797
INFO 2026-06-08 09:13:20 MarkDuplicates Tracking 571221 as yet unmatched pairs. 12069 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr14:104,942,592
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 573023 as yet unmatched pairs. 13863 records in RAM.
INFO 2026-06-08 09:13:23 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr14:104,947,048
INFO 2026-06-08 09:13:23 MarkDuplicates Tracking 576024 as yet unmatched pairs. 16861 records in RAM.
INFO 2026-06-08 09:13:25 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr14:104,952,469
INFO 2026-06-08 09:13:25 MarkDuplicates Tracking 569168 as yet unmatched pairs. 9993 records in RAM.
INFO 2026-06-08 09:13:26 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,919
INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 561611 as yet unmatched pairs. 2423 records in RAM.
INFO 2026-06-08 09:13:28 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr15:30,410,239
INFO 2026-06-08 09:13:28 MarkDuplicates Tracking 557870 as yet unmatched pairs. 34138 records in RAM.
INFO 2026-06-08 09:13:31 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 2s. Last read position: chr15:39,585,475
INFO 2026-06-08 09:13:31 MarkDuplicates Tracking 564202 as yet unmatched pairs. 40466 records in RAM.
INFO 2026-06-08 09:13:32 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr15:39,967,726
INFO 2026-06-08 09:13:32 MarkDuplicates Tracking 552900 as yet unmatched pairs. 29161 records in RAM.
INFO 2026-06-08 09:13:34 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr15:43,024,978
INFO 2026-06-08 09:13:34 MarkDuplicates Tracking 549882 as yet unmatched pairs. 26131 records in RAM.
INFO 2026-06-08 09:13:35 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr15:48,341,573
INFO 2026-06-08 09:13:35 MarkDuplicates Tracking 547480 as yet unmatched pairs. 23715 records in RAM.
INFO 2026-06-08 09:13:37 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr15:55,327,546
INFO 2026-06-08 09:13:37 MarkDuplicates Tracking 544699 as yet unmatched pairs. 20923 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr15:61,927,196
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 542493 as yet unmatched pairs. 18708 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr15:66,489,188
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 540590 as yet unmatched pairs. 16796 records in RAM.
INFO 2026-06-08 09:13:42 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr15:72,563,489
INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 537136 as yet unmatched pairs. 13334 records in RAM.
INFO 2026-06-08 09:13:44 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr15:75,412,952
INFO 2026-06-08 09:13:44 MarkDuplicates Tracking 533792 as yet unmatched pairs. 9981 records in RAM.
INFO 2026-06-08 09:13:45 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr15:80,884,331
INFO 2026-06-08 09:13:45 MarkDuplicates Tracking 530937 as yet unmatched pairs. 7112 records in RAM.
INFO 2026-06-08 09:13:47 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr15:89,323,484
INFO 2026-06-08 09:13:47 MarkDuplicates Tracking 528340 as yet unmatched pairs. 4505 records in RAM.
INFO 2026-06-08 09:13:48 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr15:92,971,889
INFO 2026-06-08 09:13:48 MarkDuplicates Tracking 525513 as yet unmatched pairs. 1668 records in RAM.
INFO 2026-06-08 09:13:51 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 2s. Last read position: chr16:552,400
INFO 2026-06-08 09:13:51 MarkDuplicates Tracking 522727 as yet unmatched pairs. 72602 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:1,691,888
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 520024 as yet unmatched pairs. 69897 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 2s. Last read position: chr16:2,174,297
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 516175 as yet unmatched pairs. 66040 records in RAM.
INFO 2026-06-08 09:13:58 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 2s. Last read position: chr16:2,929,647
INFO 2026-06-08 09:13:58 MarkDuplicates Tracking 512941 as yet unmatched pairs. 62801 records in RAM.
INFO 2026-06-08 09:13:59 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr16:4,469,434
INFO 2026-06-08 09:13:59 MarkDuplicates Tracking 509734 as yet unmatched pairs. 59586 records in RAM.
INFO 2026-06-08 09:14:01 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr16:11,883,036
INFO 2026-06-08 09:14:01 MarkDuplicates Tracking 507805 as yet unmatched pairs. 57645 records in RAM.
INFO 2026-06-08 09:14:03 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr16:15,092,514
INFO 2026-06-08 09:14:03 MarkDuplicates Tracking 505109 as yet unmatched pairs. 54943 records in RAM.
INFO 2026-06-08 09:14:04 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr16:16,383,694
INFO 2026-06-08 09:14:04 MarkDuplicates Tracking 503015 as yet unmatched pairs. 52846 records in RAM.
INFO 2026-06-08 09:14:06 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr16:18,868,344
INFO 2026-06-08 09:14:06 MarkDuplicates Tracking 501197 as yet unmatched pairs. 51027 records in RAM.
INFO 2026-06-08 09:14:07 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr16:21,843,563
INFO 2026-06-08 09:14:07 MarkDuplicates Tracking 499612 as yet unmatched pairs. 49430 records in RAM.
INFO 2026-06-08 09:14:08 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr16:24,569,277
INFO 2026-06-08 09:14:08 MarkDuplicates Tracking 497652 as yet unmatched pairs. 47468 records in RAM.
INFO 2026-06-08 09:14:10 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr16:28,844,466
INFO 2026-06-08 09:14:10 MarkDuplicates Tracking 495879 as yet unmatched pairs. 45682 records in RAM.
INFO 2026-06-08 09:14:11 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr16:29,842,003
INFO 2026-06-08 09:14:11 MarkDuplicates Tracking 493527 as yet unmatched pairs. 43328 records in RAM.
INFO 2026-06-08 09:14:13 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,707
INFO 2026-06-08 09:14:13 MarkDuplicates Tracking 490119 as yet unmatched pairs. 39920 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr16:31,077,814
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 487524 as yet unmatched pairs. 37323 records in RAM.
INFO 2026-06-08 09:14:16 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr16:31,490,839
INFO 2026-06-08 09:14:16 MarkDuplicates Tracking 485104 as yet unmatched pairs. 34892 records in RAM.
INFO 2026-06-08 09:14:18 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr16:53,696,264
INFO 2026-06-08 09:14:18 MarkDuplicates Tracking 482112 as yet unmatched pairs. 31893 records in RAM.
INFO 2026-06-08 09:14:19 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr16:56,608,996
INFO 2026-06-08 09:14:19 MarkDuplicates Tracking 565747 as yet unmatched pairs. 115522 records in RAM.
INFO 2026-06-08 09:14:21 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr16:57,172,278
INFO 2026-06-08 09:14:21 MarkDuplicates Tracking 475996 as yet unmatched pairs. 25762 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 2s. Last read position: chr16:66,622,202
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 473089 as yet unmatched pairs. 22850 records in RAM.
INFO 2026-06-08 09:14:26 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr16:67,944,866
INFO 2026-06-08 09:14:26 MarkDuplicates Tracking 470323 as yet unmatched pairs. 20075 records in RAM.
INFO 2026-06-08 09:14:28 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 2s. Last read position: chr16:69,120,419
INFO 2026-06-08 09:14:28 MarkDuplicates Tracking 468111 as yet unmatched pairs. 17858 records in RAM.
INFO 2026-06-08 09:14:30 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr16:71,895,546
INFO 2026-06-08 09:14:30 MarkDuplicates Tracking 464538 as yet unmatched pairs. 14283 records in RAM.
INFO 2026-06-08 09:14:31 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr16:75,648,305
INFO 2026-06-08 09:14:31 MarkDuplicates Tracking 461874 as yet unmatched pairs. 11616 records in RAM.
INFO 2026-06-08 09:14:33 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr16:85,661,495
INFO 2026-06-08 09:14:33 MarkDuplicates Tracking 459196 as yet unmatched pairs. 8923 records in RAM.
INFO 2026-06-08 09:14:35 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr16:88,646,755
INFO 2026-06-08 09:14:35 MarkDuplicates Tracking 458938 as yet unmatched pairs. 8657 records in RAM.
INFO 2026-06-08 09:14:36 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr16:89,645,932
INFO 2026-06-08 09:14:36 MarkDuplicates Tracking 453285 as yet unmatched pairs. 2996 records in RAM.
INFO 2026-06-08 09:14:39 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 2s. Last read position: chr17:1,364,874
INFO 2026-06-08 09:14:39 MarkDuplicates Tracking 455420 as yet unmatched pairs. 169567 records in RAM.
INFO 2026-06-08 09:14:41 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr17:2,698,095
INFO 2026-06-08 09:14:41 MarkDuplicates Tracking 446444 as yet unmatched pairs. 160585 records in RAM.
INFO 2026-06-08 09:14:43 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 1s. Last read position: chr17:5,282,381
INFO 2026-06-08 09:14:43 MarkDuplicates Tracking 443246 as yet unmatched pairs. 157382 records in RAM.
INFO 2026-06-08 09:14:44 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr17:7,456,596
INFO 2026-06-08 09:14:44 MarkDuplicates Tracking 440548 as yet unmatched pairs. 154675 records in RAM.
INFO 2026-06-08 09:14:46 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr17:7,849,712
INFO 2026-06-08 09:14:46 MarkDuplicates Tracking 437880 as yet unmatched pairs. 152004 records in RAM.
INFO 2026-06-08 09:14:48 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr17:15,259,116
INFO 2026-06-08 09:14:48 MarkDuplicates Tracking 438928 as yet unmatched pairs. 153034 records in RAM.
INFO 2026-06-08 09:14:49 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr17:17,815,895
INFO 2026-06-08 09:14:49 MarkDuplicates Tracking 432722 as yet unmatched pairs. 146819 records in RAM.
INFO 2026-06-08 09:14:51 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 1s. Last read position: chr17:20,205,104
INFO 2026-06-08 09:14:51 MarkDuplicates Tracking 429478 as yet unmatched pairs. 143565 records in RAM.
INFO 2026-06-08 09:14:53 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr17:28,695,382
INFO 2026-06-08 09:14:53 MarkDuplicates Tracking 426771 as yet unmatched pairs. 140858 records in RAM.
INFO 2026-06-08 09:14:55 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 2s. Last read position: chr17:30,421,790
INFO 2026-06-08 09:14:55 MarkDuplicates Tracking 424078 as yet unmatched pairs. 138163 records in RAM.
INFO 2026-06-08 09:14:57 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr17:35,259,656
INFO 2026-06-08 09:14:57 MarkDuplicates Tracking 422149 as yet unmatched pairs. 136230 records in RAM.
INFO 2026-06-08 09:14:59 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr17:37,984,803
INFO 2026-06-08 09:14:59 MarkDuplicates Tracking 418457 as yet unmatched pairs. 132530 records in RAM.
INFO 2026-06-08 09:15:01 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,387
INFO 2026-06-08 09:15:01 MarkDuplicates Tracking 417487 as yet unmatched pairs. 131546 records in RAM.
INFO 2026-06-08 09:15:02 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr17:40,478,589
INFO 2026-06-08 09:15:02 MarkDuplicates Tracking 413628 as yet unmatched pairs. 127671 records in RAM.
INFO 2026-06-08 09:15:04 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 1s. Last read position: chr17:41,528,084
INFO 2026-06-08 09:15:04 MarkDuplicates Tracking 412610 as yet unmatched pairs. 126649 records in RAM.
INFO 2026-06-08 09:15:06 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 1s. Last read position: chr17:41,586,411
INFO 2026-06-08 09:15:06 MarkDuplicates Tracking 417282 as yet unmatched pairs. 131318 records in RAM.
INFO 2026-06-08 09:15:08 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 1s. Last read position: chr17:41,621,613
INFO 2026-06-08 09:15:08 MarkDuplicates Tracking 413469 as yet unmatched pairs. 127504 records in RAM.
INFO 2026-06-08 09:15:09 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 1s. Last read position: chr17:41,758,425
INFO 2026-06-08 09:15:09 MarkDuplicates Tracking 401961 as yet unmatched pairs. 115996 records in RAM.
INFO 2026-06-08 09:15:11 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr17:42,422,653
INFO 2026-06-08 09:15:11 MarkDuplicates Tracking 398671 as yet unmatched pairs. 112701 records in RAM.
INFO 2026-06-08 09:16:09 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 58s. Last read position: chr17:44,320,058
INFO 2026-06-08 09:16:09 MarkDuplicates Tracking 395568 as yet unmatched pairs. 109597 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 70s. Last read position: chr17:46,722,128
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 391728 as yet unmatched pairs. 105752 records in RAM.
INFO 2026-06-08 09:17:22 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 2s. Last read position: chr17:50,064,577
INFO 2026-06-08 09:17:22 MarkDuplicates Tracking 394098 as yet unmatched pairs. 108118 records in RAM.
INFO 2026-06-08 09:17:23 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,547
INFO 2026-06-08 09:17:23 MarkDuplicates Tracking 400475 as yet unmatched pairs. 114493 records in RAM.
INFO 2026-06-08 09:17:25 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,662
INFO 2026-06-08 09:17:25 MarkDuplicates Tracking 406799 as yet unmatched pairs. 120815 records in RAM.
INFO 2026-06-08 09:17:27 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,082
INFO 2026-06-08 09:17:27 MarkDuplicates Tracking 467329 as yet unmatched pairs. 181345 records in RAM.
INFO 2026-06-08 09:17:28 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,960
INFO 2026-06-08 09:17:28 MarkDuplicates Tracking 483713 as yet unmatched pairs. 197725 records in RAM.
INFO 2026-06-08 09:17:30 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,764
INFO 2026-06-08 09:17:30 MarkDuplicates Tracking 441263 as yet unmatched pairs. 155271 records in RAM.
INFO 2026-06-08 09:17:32 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,264
INFO 2026-06-08 09:17:32 MarkDuplicates Tracking 429338 as yet unmatched pairs. 143340 records in RAM.
INFO 2026-06-08 09:17:34 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,714
INFO 2026-06-08 09:17:34 MarkDuplicates Tracking 465790 as yet unmatched pairs. 179788 records in RAM.
INFO 2026-06-08 09:17:36 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,329
INFO 2026-06-08 09:17:36 MarkDuplicates Tracking 477858 as yet unmatched pairs. 191848 records in RAM.
INFO 2026-06-08 09:17:38 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,388
INFO 2026-06-08 09:17:38 MarkDuplicates Tracking 446277 as yet unmatched pairs. 160265 records in RAM.
INFO 2026-06-08 09:17:40 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,008
INFO 2026-06-08 09:17:40 MarkDuplicates Tracking 452962 as yet unmatched pairs. 166944 records in RAM.
INFO 2026-06-08 09:17:42 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,993
INFO 2026-06-08 09:17:42 MarkDuplicates Tracking 445709 as yet unmatched pairs. 159687 records in RAM.
INFO 2026-06-08 09:17:44 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,032
INFO 2026-06-08 09:17:44 MarkDuplicates Tracking 466907 as yet unmatched pairs. 180881 records in RAM.
INFO 2026-06-08 09:17:45 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,585
INFO 2026-06-08 09:17:45 MarkDuplicates Tracking 432165 as yet unmatched pairs. 146132 records in RAM.
INFO 2026-06-08 09:17:47 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,089
INFO 2026-06-08 09:17:47 MarkDuplicates Tracking 430262 as yet unmatched pairs. 144215 records in RAM.
INFO 2026-06-08 09:17:49 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,600
INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 455679 as yet unmatched pairs. 169628 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,185
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 457028 as yet unmatched pairs. 170971 records in RAM.
INFO 2026-06-08 09:17:53 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,655
INFO 2026-06-08 09:17:53 MarkDuplicates Tracking 467485 as yet unmatched pairs. 181421 records in RAM.
INFO 2026-06-08 09:17:55 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,762
INFO 2026-06-08 09:17:55 MarkDuplicates Tracking 436810 as yet unmatched pairs. 150740 records in RAM.
INFO 2026-06-08 09:17:56 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,257
INFO 2026-06-08 09:17:56 MarkDuplicates Tracking 404142 as yet unmatched pairs. 118070 records in RAM.
INFO 2026-06-08 09:17:58 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,821
INFO 2026-06-08 09:17:58 MarkDuplicates Tracking 364650 as yet unmatched pairs. 78577 records in RAM.
INFO 2026-06-08 09:18:01 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 2s. Last read position: chr17:51,166,820
INFO 2026-06-08 09:18:01 MarkDuplicates Tracking 328257 as yet unmatched pairs. 42174 records in RAM.
INFO 2026-06-08 09:18:04 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 2s. Last read position: chr17:59,660,518
INFO 2026-06-08 09:18:04 MarkDuplicates Tracking 327735 as yet unmatched pairs. 41646 records in RAM.
INFO 2026-06-08 09:18:05 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr17:59,693,778
INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 321573 as yet unmatched pairs. 35477 records in RAM.
INFO 2026-06-08 09:18:07 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr17:63,752,094
INFO 2026-06-08 09:18:07 MarkDuplicates Tracking 317531 as yet unmatched pairs. 31426 records in RAM.
INFO 2026-06-08 09:18:08 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr17:67,931,933
INFO 2026-06-08 09:18:08 MarkDuplicates Tracking 314683 as yet unmatched pairs. 28570 records in RAM.
INFO 2026-06-08 09:18:10 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr17:74,203,811
INFO 2026-06-08 09:18:10 MarkDuplicates Tracking 314868 as yet unmatched pairs. 28752 records in RAM.
INFO 2026-06-08 09:18:12 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr17:75,730,370
INFO 2026-06-08 09:18:12 MarkDuplicates Tracking 312519 as yet unmatched pairs. 26401 records in RAM.
INFO 2026-06-08 09:18:13 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr17:75,778,636
INFO 2026-06-08 09:18:13 MarkDuplicates Tracking 315222 as yet unmatched pairs. 29103 records in RAM.
INFO 2026-06-08 09:18:15 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr17:76,736,365
INFO 2026-06-08 09:18:15 MarkDuplicates Tracking 304350 as yet unmatched pairs. 18231 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr17:78,855,834
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 300101 as yet unmatched pairs. 13977 records in RAM.
INFO 2026-06-08 09:18:18 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr17:80,372,972
INFO 2026-06-08 09:18:18 MarkDuplicates Tracking 296646 as yet unmatched pairs. 10521 records in RAM.
INFO 2026-06-08 09:18:20 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr17:81,644,964
INFO 2026-06-08 09:18:20 MarkDuplicates Tracking 293004 as yet unmatched pairs. 6872 records in RAM.
INFO 2026-06-08 09:18:22 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr17:81,983,608
INFO 2026-06-08 09:18:22 MarkDuplicates Tracking 291217 as yet unmatched pairs. 5081 records in RAM.
INFO 2026-06-08 09:18:23 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr17:82,927,199
INFO 2026-06-08 09:18:23 MarkDuplicates Tracking 286733 as yet unmatched pairs. 594 records in RAM.
INFO 2026-06-08 09:18:26 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr18:6,980,567
INFO 2026-06-08 09:18:26 MarkDuplicates Tracking 284108 as yet unmatched pairs. 19793 records in RAM.
INFO 2026-06-08 09:18:28 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 2s. Last read position: chr18:12,308,770
INFO 2026-06-08 09:18:28 MarkDuplicates Tracking 285602 as yet unmatched pairs. 21278 records in RAM.
INFO 2026-06-08 09:18:30 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr18:23,529,958
INFO 2026-06-08 09:18:30 MarkDuplicates Tracking 278419 as yet unmatched pairs. 14092 records in RAM.
INFO 2026-06-08 09:18:32 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr18:23,914,696
INFO 2026-06-08 09:18:32 MarkDuplicates Tracking 281456 as yet unmatched pairs. 17127 records in RAM.
INFO 2026-06-08 09:18:33 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr18:26,057,684
INFO 2026-06-08 09:18:33 MarkDuplicates Tracking 276771 as yet unmatched pairs. 12441 records in RAM.
INFO 2026-06-08 09:18:35 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr18:32,287,781
INFO 2026-06-08 09:18:35 MarkDuplicates Tracking 270471 as yet unmatched pairs. 6140 records in RAM.
INFO 2026-06-08 09:18:37 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr18:55,232,652
INFO 2026-06-08 09:18:37 MarkDuplicates Tracking 268208 as yet unmatched pairs. 3868 records in RAM.
INFO 2026-06-08 09:18:38 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr18:79,680,144
INFO 2026-06-08 09:18:38 MarkDuplicates Tracking 265058 as yet unmatched pairs. 714 records in RAM.
INFO 2026-06-08 09:18:40 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr19:810,582
INFO 2026-06-08 09:18:40 MarkDuplicates Tracking 264438 as yet unmatched pairs. 112282 records in RAM.
INFO 2026-06-08 09:18:42 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:1,241,936
INFO 2026-06-08 09:18:42 MarkDuplicates Tracking 258689 as yet unmatched pairs. 106533 records in RAM.
INFO 2026-06-08 09:18:44 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:1,881,300
INFO 2026-06-08 09:18:44 MarkDuplicates Tracking 257754 as yet unmatched pairs. 105597 records in RAM.
INFO 2026-06-08 09:18:45 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:2,477,530
INFO 2026-06-08 09:18:45 MarkDuplicates Tracking 252062 as yet unmatched pairs. 99905 records in RAM.
INFO 2026-06-08 09:18:47 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:4,099,360
INFO 2026-06-08 09:18:47 MarkDuplicates Tracking 249374 as yet unmatched pairs. 97214 records in RAM.
INFO 2026-06-08 09:18:49 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr19:5,219,941
INFO 2026-06-08 09:18:49 MarkDuplicates Tracking 245426 as yet unmatched pairs. 93263 records in RAM.
INFO 2026-06-08 09:18:50 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:6,730,315
INFO 2026-06-08 09:18:50 MarkDuplicates Tracking 241730 as yet unmatched pairs. 89560 records in RAM.
INFO 2026-06-08 09:18:52 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:7,909,847
INFO 2026-06-08 09:18:52 MarkDuplicates Tracking 238561 as yet unmatched pairs. 86390 records in RAM.
INFO 2026-06-08 09:18:54 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 2s. Last read position: chr19:9,979,373
INFO 2026-06-08 09:18:54 MarkDuplicates Tracking 236607 as yet unmatched pairs. 84435 records in RAM.
INFO 2026-06-08 09:18:57 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 2s. Last read position: chr19:10,637,701
INFO 2026-06-08 09:18:57 MarkDuplicates Tracking 232923 as yet unmatched pairs. 80751 records in RAM.
INFO 2026-06-08 09:18:58 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:11,437,923
INFO 2026-06-08 09:18:58 MarkDuplicates Tracking 230313 as yet unmatched pairs. 78136 records in RAM.
INFO 2026-06-08 09:19:00 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:12,928,651
INFO 2026-06-08 09:19:00 MarkDuplicates Tracking 226214 as yet unmatched pairs. 74037 records in RAM.
INFO 2026-06-08 09:19:02 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:14,093,687
INFO 2026-06-08 09:19:02 MarkDuplicates Tracking 225931 as yet unmatched pairs. 73749 records in RAM.
INFO 2026-06-08 09:19:03 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,908
INFO 2026-06-08 09:19:03 MarkDuplicates Tracking 229036 as yet unmatched pairs. 76851 records in RAM.
INFO 2026-06-08 09:19:05 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr19:15,244,305
INFO 2026-06-08 09:19:05 MarkDuplicates Tracking 220074 as yet unmatched pairs. 67886 records in RAM.
INFO 2026-06-08 09:19:06 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr19:16,393,956
INFO 2026-06-08 09:19:06 MarkDuplicates Tracking 213965 as yet unmatched pairs. 61776 records in RAM.
INFO 2026-06-08 09:19:08 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr19:17,581,317
INFO 2026-06-08 09:19:08 MarkDuplicates Tracking 212742 as yet unmatched pairs. 60548 records in RAM.
INFO 2026-06-08 09:19:10 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:18,532,109
INFO 2026-06-08 09:19:10 MarkDuplicates Tracking 209457 as yet unmatched pairs. 57255 records in RAM.
INFO 2026-06-08 09:19:11 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr19:19,147,798
INFO 2026-06-08 09:19:11 MarkDuplicates Tracking 203901 as yet unmatched pairs. 51698 records in RAM.
INFO 2026-06-08 09:19:13 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr19:34,296,485
INFO 2026-06-08 09:19:13 MarkDuplicates Tracking 200869 as yet unmatched pairs. 48657 records in RAM.
INFO 2026-06-08 09:19:15 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 2s. Last read position: chr19:35,510,248
INFO 2026-06-08 09:19:15 MarkDuplicates Tracking 197726 as yet unmatched pairs. 45514 records in RAM.
INFO 2026-06-08 09:19:16 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:38,290,136
INFO 2026-06-08 09:19:16 MarkDuplicates Tracking 196744 as yet unmatched pairs. 44532 records in RAM.
INFO 2026-06-08 09:19:18 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr19:39,381,063
INFO 2026-06-08 09:19:18 MarkDuplicates Tracking 192664 as yet unmatched pairs. 40451 records in RAM.
INFO 2026-06-08 09:19:20 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr19:40,192,089
INFO 2026-06-08 09:19:20 MarkDuplicates Tracking 188924 as yet unmatched pairs. 36710 records in RAM.
INFO 2026-06-08 09:19:22 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr19:41,243,678
INFO 2026-06-08 09:19:22 MarkDuplicates Tracking 187142 as yet unmatched pairs. 34928 records in RAM.
INFO 2026-06-08 09:19:24 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 2s. Last read position: chr19:42,271,810
INFO 2026-06-08 09:19:24 MarkDuplicates Tracking 182884 as yet unmatched pairs. 30669 records in RAM.
INFO 2026-06-08 09:19:26 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr19:43,546,706
INFO 2026-06-08 09:19:26 MarkDuplicates Tracking 179506 as yet unmatched pairs. 27289 records in RAM.
INFO 2026-06-08 09:19:28 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr19:45,408,763
INFO 2026-06-08 09:19:28 MarkDuplicates Tracking 175961 as yet unmatched pairs. 23738 records in RAM.
INFO 2026-06-08 09:19:29 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr19:46,787,561
INFO 2026-06-08 09:19:29 MarkDuplicates Tracking 173964 as yet unmatched pairs. 21740 records in RAM.
INFO 2026-06-08 09:19:31 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr19:48,469,437
INFO 2026-06-08 09:19:31 MarkDuplicates Tracking 169800 as yet unmatched pairs. 17573 records in RAM.
INFO 2026-06-08 09:19:32 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr19:49,139,714
INFO 2026-06-08 09:19:32 MarkDuplicates Tracking 166926 as yet unmatched pairs. 14698 records in RAM.
INFO 2026-06-08 09:19:35 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 2s. Last read position: chr19:49,793,016
INFO 2026-06-08 09:19:35 MarkDuplicates Tracking 164388 as yet unmatched pairs. 12153 records in RAM.
INFO 2026-06-08 09:19:36 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr19:52,066,327
INFO 2026-06-08 09:19:36 MarkDuplicates Tracking 161334 as yet unmatched pairs. 9099 records in RAM.
INFO 2026-06-08 09:19:38 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr19:54,456,034
INFO 2026-06-08 09:19:38 MarkDuplicates Tracking 158338 as yet unmatched pairs. 6101 records in RAM.
INFO 2026-06-08 09:19:40 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr19:55,695,232
INFO 2026-06-08 09:19:40 MarkDuplicates Tracking 155536 as yet unmatched pairs. 3298 records in RAM.
INFO 2026-06-08 09:19:41 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr20:508,480
INFO 2026-06-08 09:19:41 MarkDuplicates Tracking 151900 as yet unmatched pairs. 40313 records in RAM.
INFO 2026-06-08 09:19:43 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr20:3,785,826
INFO 2026-06-08 09:19:43 MarkDuplicates Tracking 149448 as yet unmatched pairs. 37858 records in RAM.
INFO 2026-06-08 09:19:45 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr20:10,651,613
INFO 2026-06-08 09:19:45 MarkDuplicates Tracking 150143 as yet unmatched pairs. 38550 records in RAM.
INFO 2026-06-08 09:19:47 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr20:21,333,719
INFO 2026-06-08 09:19:47 MarkDuplicates Tracking 144435 as yet unmatched pairs. 32842 records in RAM.
INFO 2026-06-08 09:19:49 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 2s. Last read position: chr20:32,149,637
INFO 2026-06-08 09:19:49 MarkDuplicates Tracking 141437 as yet unmatched pairs. 29844 records in RAM.
INFO 2026-06-08 09:19:50 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr20:35,474,012
INFO 2026-06-08 09:19:50 MarkDuplicates Tracking 137471 as yet unmatched pairs. 25878 records in RAM.
INFO 2026-06-08 09:19:53 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 2s. Last read position: chr20:37,234,031
INFO 2026-06-08 09:19:53 MarkDuplicates Tracking 137211 as yet unmatched pairs. 25618 records in RAM.
INFO 2026-06-08 09:19:54 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr20:44,513,962
INFO 2026-06-08 09:19:54 MarkDuplicates Tracking 133709 as yet unmatched pairs. 22115 records in RAM.
INFO 2026-06-08 09:19:55 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr20:45,894,885
INFO 2026-06-08 09:19:55 MarkDuplicates Tracking 130464 as yet unmatched pairs. 18870 records in RAM.
INFO 2026-06-08 09:19:57 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr20:47,684,560
INFO 2026-06-08 09:19:57 MarkDuplicates Tracking 127783 as yet unmatched pairs. 16186 records in RAM.
INFO 2026-06-08 09:19:59 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr20:50,904,815
INFO 2026-06-08 09:19:59 MarkDuplicates Tracking 123272 as yet unmatched pairs. 11666 records in RAM.
INFO 2026-06-08 09:20:00 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chr20:58,909,378
INFO 2026-06-08 09:20:00 MarkDuplicates Tracking 123570 as yet unmatched pairs. 11957 records in RAM.
INFO 2026-06-08 09:20:02 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chr20:62,337,671
INFO 2026-06-08 09:20:02 MarkDuplicates Tracking 117653 as yet unmatched pairs. 6038 records in RAM.
INFO 2026-06-08 09:20:04 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr20:63,697,337
INFO 2026-06-08 09:20:04 MarkDuplicates Tracking 115112 as yet unmatched pairs. 3495 records in RAM.
INFO 2026-06-08 09:20:05 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr21:8,210,398
INFO 2026-06-08 09:20:05 MarkDuplicates Tracking 110992 as yet unmatched pairs. 22383 records in RAM.
INFO 2026-06-08 09:20:06 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr21:25,881,712
INFO 2026-06-08 09:20:06 MarkDuplicates Tracking 112468 as yet unmatched pairs. 23856 records in RAM.
INFO 2026-06-08 09:20:08 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr21:31,663,817
INFO 2026-06-08 09:20:08 MarkDuplicates Tracking 107413 as yet unmatched pairs. 18801 records in RAM.
INFO 2026-06-08 09:20:10 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chr21:34,880,588
INFO 2026-06-08 09:20:10 MarkDuplicates Tracking 104254 as yet unmatched pairs. 15639 records in RAM.
INFO 2026-06-08 09:20:12 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chr21:41,226,275
INFO 2026-06-08 09:20:12 MarkDuplicates Tracking 100736 as yet unmatched pairs. 12111 records in RAM.
INFO 2026-06-08 09:20:13 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr21:44,228,227
INFO 2026-06-08 09:20:13 MarkDuplicates Tracking 97695 as yet unmatched pairs. 9070 records in RAM.
INFO 2026-06-08 09:20:15 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr21:45,913,959
INFO 2026-06-08 09:20:15 MarkDuplicates Tracking 94402 as yet unmatched pairs. 5777 records in RAM.
INFO 2026-06-08 09:20:17 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chr21:46,117,918
INFO 2026-06-08 09:20:17 MarkDuplicates Tracking 93266 as yet unmatched pairs. 4640 records in RAM.
INFO 2026-06-08 09:20:18 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chr22:17,791,219
INFO 2026-06-08 09:20:18 MarkDuplicates Tracking 88423 as yet unmatched pairs. 44693 records in RAM.
INFO 2026-06-08 09:20:20 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr22:20,732,971
INFO 2026-06-08 09:20:20 MarkDuplicates Tracking 85009 as yet unmatched pairs. 41272 records in RAM.
INFO 2026-06-08 09:20:22 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chr22:23,295,115
INFO 2026-06-08 09:20:22 MarkDuplicates Tracking 85754 as yet unmatched pairs. 42016 records in RAM.
INFO 2026-06-08 09:20:23 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chr22:27,858,411
INFO 2026-06-08 09:20:23 MarkDuplicates Tracking 79553 as yet unmatched pairs. 35815 records in RAM.
INFO 2026-06-08 09:20:25 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chr22:29,569,248
INFO 2026-06-08 09:20:25 MarkDuplicates Tracking 75814 as yet unmatched pairs. 32076 records in RAM.
INFO 2026-06-08 09:20:26 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chr22:31,717,211
INFO 2026-06-08 09:20:26 MarkDuplicates Tracking 72799 as yet unmatched pairs. 29060 records in RAM.
INFO 2026-06-08 09:20:28 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,764
INFO 2026-06-08 09:20:28 MarkDuplicates Tracking 73586 as yet unmatched pairs. 29845 records in RAM.
INFO 2026-06-08 09:20:30 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: chr22:36,867,432
INFO 2026-06-08 09:20:30 MarkDuplicates Tracking 66967 as yet unmatched pairs. 23226 records in RAM.
INFO 2026-06-08 09:20:31 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chr22:37,927,421
INFO 2026-06-08 09:20:31 MarkDuplicates Tracking 65911 as yet unmatched pairs. 22168 records in RAM.
INFO 2026-06-08 09:20:32 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chr22:39,231,776
INFO 2026-06-08 09:20:32 MarkDuplicates Tracking 64022 as yet unmatched pairs. 20279 records in RAM.
INFO 2026-06-08 09:20:34 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chr22:41,346,090
INFO 2026-06-08 09:20:34 MarkDuplicates Tracking 58641 as yet unmatched pairs. 14898 records in RAM.
INFO 2026-06-08 09:20:36 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 1s. Last read position: chr22:42,871,446
INFO 2026-06-08 09:20:36 MarkDuplicates Tracking 55683 as yet unmatched pairs. 11940 records in RAM.
INFO 2026-06-08 09:20:38 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 2s. Last read position: chr22:46,394,202
INFO 2026-06-08 09:20:38 MarkDuplicates Tracking 54406 as yet unmatched pairs. 10659 records in RAM.
INFO 2026-06-08 09:20:39 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 1s. Last read position: chr22:50,278,490
INFO 2026-06-08 09:20:39 MarkDuplicates Tracking 49611 as yet unmatched pairs. 5864 records in RAM.
INFO 2026-06-08 09:20:41 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 1s. Last read position: chr22:50,529,490
INFO 2026-06-08 09:20:41 MarkDuplicates Tracking 47988 as yet unmatched pairs. 4240 records in RAM.
INFO 2026-06-08 09:20:43 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 2s. Last read position: chrX:3,323,052
INFO 2026-06-08 09:20:43 MarkDuplicates Tracking 42355 as yet unmatched pairs. 40578 records in RAM.
INFO 2026-06-08 09:20:45 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: chrX:21,977,094
INFO 2026-06-08 09:20:45 MarkDuplicates Tracking 39355 as yet unmatched pairs. 37578 records in RAM.
INFO 2026-06-08 09:20:46 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 1s. Last read position: chrX:40,605,615
INFO 2026-06-08 09:20:46 MarkDuplicates Tracking 39209 as yet unmatched pairs. 37432 records in RAM.
INFO 2026-06-08 09:20:48 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chrX:47,210,053
INFO 2026-06-08 09:20:48 MarkDuplicates Tracking 34970 as yet unmatched pairs. 33193 records in RAM.
INFO 2026-06-08 09:20:49 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 1s. Last read position: chrX:48,478,630
INFO 2026-06-08 09:20:49 MarkDuplicates Tracking 31848 as yet unmatched pairs. 30071 records in RAM.
INFO 2026-06-08 09:20:51 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 1s. Last read position: chrX:51,895,325
INFO 2026-06-08 09:20:51 MarkDuplicates Tracking 28790 as yet unmatched pairs. 27013 records in RAM.
INFO 2026-06-08 09:20:53 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chrX:54,542,981
INFO 2026-06-08 09:20:53 MarkDuplicates Tracking 25457 as yet unmatched pairs. 23680 records in RAM.
INFO 2026-06-08 09:20:54 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 1s. Last read position: chrX:71,290,753
INFO 2026-06-08 09:20:54 MarkDuplicates Tracking 23677 as yet unmatched pairs. 21900 records in RAM.
INFO 2026-06-08 09:20:56 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 1s. Last read position: chrX:78,114,062
INFO 2026-06-08 09:20:56 MarkDuplicates Tracking 22243 as yet unmatched pairs. 20466 records in RAM.
INFO 2026-06-08 09:20:57 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 1s. Last read position: chrX:108,206,544
INFO 2026-06-08 09:20:57 MarkDuplicates Tracking 17890 as yet unmatched pairs. 16112 records in RAM.
INFO 2026-06-08 09:20:59 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 1s. Last read position: chrX:120,455,403
INFO 2026-06-08 09:20:59 MarkDuplicates Tracking 17377 as yet unmatched pairs. 15599 records in RAM.
INFO 2026-06-08 09:21:00 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 1s. Last read position: chrX:139,789,375
INFO 2026-06-08 09:21:00 MarkDuplicates Tracking 12345 as yet unmatched pairs. 10567 records in RAM.
INFO 2026-06-08 09:21:02 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 1s. Last read position: chrX:153,929,951
INFO 2026-06-08 09:21:02 MarkDuplicates Tracking 9420 as yet unmatched pairs. 7642 records in RAM.
INFO 2026-06-08 09:21:04 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 1s. Last read position: chrX:154,359,811
INFO 2026-06-08 09:21:04 MarkDuplicates Tracking 8333 as yet unmatched pairs. 6555 records in RAM.
INFO 2026-06-08 09:21:06 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: chrX:154,460,068
INFO 2026-06-08 09:21:06 MarkDuplicates Tracking 4019 as yet unmatched pairs. 2238 records in RAM.
INFO 2026-06-08 09:21:07 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,432
INFO 2026-06-08 09:21:07 MarkDuplicates Tracking 1011 as yet unmatched pairs. 67 records in RAM.
INFO 2026-06-08 09:21:08 MarkDuplicates Read 618636687 records. 0 pairs never matched.
INFO 2026-06-08 09:22:04 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142032; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:22:04 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:22:08 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:22:08 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:22:19 OpticalDuplicateFinder Large duplicate set. size = 1460
INFO 2026-06-08 09:22:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,728
INFO 2026-06-08 09:22:19 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:22:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,627
INFO 2026-06-08 09:22:20 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:22:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,111
INFO 2026-06-08 09:22:54 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 09:22:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,946
INFO 2026-06-08 09:22:58 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 09:22:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,511
INFO 2026-06-08 09:22:58 OpticalDuplicateFinder Large duplicate set. size = 1497
INFO 2026-06-08 09:22:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,822
INFO 2026-06-08 09:22:58 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 09:22:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,583
INFO 2026-06-08 09:22:59 OpticalDuplicateFinder Large duplicate set. size = 1358
INFO 2026-06-08 09:22:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,469
INFO 2026-06-08 09:22:59 OpticalDuplicateFinder Large duplicate set. size = 1419
INFO 2026-06-08 09:22:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,940
INFO 2026-06-08 09:22:59 OpticalDuplicateFinder Large duplicate set. size = 1294
INFO 2026-06-08 09:22:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,905
INFO 2026-06-08 09:23:00 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 09:23:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,328
INFO 2026-06-08 09:23:00 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:23:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,137
INFO 2026-06-08 09:23:00 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 09:23:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,422
INFO 2026-06-08 09:23:00 OpticalDuplicateFinder Large duplicate set. size = 1500
INFO 2026-06-08 09:23:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,212
INFO 2026-06-08 09:23:00 OpticalDuplicateFinder Large duplicate set. size = 2076
INFO 2026-06-08 09:23:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,949
INFO 2026-06-08 09:23:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,922
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder Large duplicate set. size = 1249
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,770
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,647
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder Large duplicate set. size = 1387
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,285
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,991
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder Large duplicate set. size = 1242
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,082
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder Large duplicate set. size = 2243
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,573
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,569
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder Large duplicate set. size = 1250
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,575
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder Large duplicate set. size = 1490
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,177
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder Large duplicate set. size = 1458
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,890
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder Large duplicate set. size = 1100
INFO 2026-06-08 09:23:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,972
INFO 2026-06-08 09:23:32 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:23:32 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:24:38 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:24:39 MarkDuplicates After generateDuplicateIndexes freeMemory: 203944992; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:24:39 MarkDuplicates Marking 286905278 records as duplicates.
INFO 2026-06-08 09:24:39 MarkDuplicates Found 19387818 optical duplicate clusters.
INFO 2026-06-08 09:24:39 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:24:56 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:21,823,658
INFO 2026-06-08 09:25:13 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:36,457,952
INFO 2026-06-08 09:25:30 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 17s. Last read position: chr1:100,275,673
INFO 2026-06-08 09:25:45 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 15s. Last read position: chr1:154,584,612
INFO 2026-06-08 09:26:01 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:21s. Time for last 10,000,000: 15s. Last read position: chr1:183,218,434
INFO 2026-06-08 09:26:17 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:37s. Time for last 10,000,000: 15s. Last read position: chr1:226,889,021
INFO 2026-06-08 09:26:32 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:52s. Time for last 10,000,000: 15s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:26:48 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:08s. Time for last 10,000,000: 15s. Last read position: chr2:70,276,734
INFO 2026-06-08 09:27:04 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:24s. Time for last 10,000,000: 16s. Last read position: chr2:144,403,980
INFO 2026-06-08 09:27:21 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:41s. Time for last 10,000,000: 17s. Last read position: chr2:203,144,687
INFO 2026-06-08 09:27:37 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:57s. Time for last 10,000,000: 15s. Last read position: chr2:215,407,124
INFO 2026-06-08 09:27:52 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:13s. Time for last 10,000,000: 15s. Last read position: chr2:237,763,831
INFO 2026-06-08 09:28:08 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:28s. Time for last 10,000,000: 15s. Last read position: chr3:50,236,422
INFO 2026-06-08 09:28:24 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:44s. Time for last 10,000,000: 16s. Last read position: chr3:129,252,360
INFO 2026-06-08 09:28:44 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:04s. Time for last 10,000,000: 20s. Last read position: chr3:194,427,108
INFO 2026-06-08 09:29:02 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:22s. Time for last 10,000,000: 17s. Last read position: chr4:75,657,614
INFO 2026-06-08 09:29:18 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:38s. Time for last 10,000,000: 15s. Last read position: chr5:14,481,274
INFO 2026-06-08 09:29:34 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 15s. Last read position: chr5:138,556,009
INFO 2026-06-08 09:29:50 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 16s. Last read position: chr5:179,726,735
INFO 2026-06-08 09:30:07 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:28s. Time for last 10,000,000: 17s. Last read position: chr6:31,816,197
INFO 2026-06-08 09:30:26 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:46s. Time for last 10,000,000: 18s. Last read position: chr6:56,639,942
INFO 2026-06-08 09:30:42 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:02s. Time for last 10,000,000: 15s. Last read position: chr6:158,789,361
INFO 2026-06-08 09:30:57 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:17s. Time for last 10,000,000: 15s. Last read position: chr7:32,975,265
INFO 2026-06-08 09:31:13 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:33s. Time for last 10,000,000: 15s. Last read position: chr7:76,302,819
INFO 2026-06-08 09:31:28 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:48s. Time for last 10,000,000: 15s. Last read position: chr7:127,591,022
INFO 2026-06-08 09:31:44 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:04s. Time for last 10,000,000: 15s. Last read position: chr8:38,842,435
INFO 2026-06-08 09:31:59 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:19s. Time for last 10,000,000: 15s. Last read position: chr8:132,798,791
INFO 2026-06-08 09:32:15 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:35s. Time for last 10,000,000: 15s. Last read position: chr9:33,278,135
INFO 2026-06-08 09:32:30 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:50s. Time for last 10,000,000: 15s. Last read position: chr9:114,310,980
INFO 2026-06-08 09:32:46 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:06s. Time for last 10,000,000: 15s. Last read position: chr10:5,456,838
INFO 2026-06-08 09:33:01 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:21s. Time for last 10,000,000: 15s. Last read position: chr10:73,912,958
INFO 2026-06-08 09:33:17 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:37s. Time for last 10,000,000: 15s. Last read position: chr10:124,706,636
INFO 2026-06-08 09:33:32 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:52s. Time for last 10,000,000: 15s. Last read position: chr11:35,139,242
INFO 2026-06-08 09:33:48 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:08s. Time for last 10,000,000: 15s. Last read position: chr11:63,839,363
INFO 2026-06-08 09:34:03 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:23s. Time for last 10,000,000: 15s. Last read position: chr11:72,726,773
INFO 2026-06-08 09:34:19 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 15s. Last read position: chr11:128,936,619
INFO 2026-06-08 09:34:34 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:55s. Time for last 10,000,000: 15s. Last read position: chr12:47,785,853
INFO 2026-06-08 09:34:50 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:10s. Time for last 10,000,000: 15s. Last read position: chr12:55,837,067
INFO 2026-06-08 09:35:06 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:26s. Time for last 10,000,000: 15s. Last read position: chr12:108,535,426
INFO 2026-06-08 09:35:21 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:41s. Time for last 10,000,000: 15s. Last read position: chr13:42,299,703
INFO 2026-06-08 09:35:37 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:57s. Time for last 10,000,000: 15s. Last read position: chr14:35,308,922
INFO 2026-06-08 09:35:53 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:13s. Time for last 10,000,000: 15s. Last read position: chr14:99,458,388
INFO 2026-06-08 09:36:08 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:28s. Time for last 10,000,000: 15s. Last read position: chr15:43,024,978
INFO 2026-06-08 09:36:24 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:44s. Time for last 10,000,000: 15s. Last read position: chr16:552,400
INFO 2026-06-08 09:36:40 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:00s. Time for last 10,000,000: 15s. Last read position: chr16:24,569,277
INFO 2026-06-08 09:36:55 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:15s. Time for last 10,000,000: 15s. Last read position: chr16:67,944,866
INFO 2026-06-08 09:37:11 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:31s. Time for last 10,000,000: 15s. Last read position: chr17:7,456,596
INFO 2026-06-08 09:37:26 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:46s. Time for last 10,000,000: 15s. Last read position: chr17:40,478,589
INFO 2026-06-08 09:37:42 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:02s. Time for last 10,000,000: 15s. Last read position: chr17:50,186,662
INFO 2026-06-08 09:37:57 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:17s. Time for last 10,000,000: 15s. Last read position: chr17:50,194,032
INFO 2026-06-08 09:38:15 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:35s. Time for last 10,000,000: 17s. Last read position: chr17:59,660,518
INFO 2026-06-08 09:38:30 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:50s. Time for last 10,000,000: 15s. Last read position: chr17:81,644,964
INFO 2026-06-08 09:38:46 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:06s. Time for last 10,000,000: 15s. Last read position: chr18:79,680,144
INFO 2026-06-08 09:39:01 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:21s. Time for last 10,000,000: 15s. Last read position: chr19:10,637,701
INFO 2026-06-08 09:39:17 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:37s. Time for last 10,000,000: 15s. Last read position: chr19:34,296,485
INFO 2026-06-08 09:39:32 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:52s. Time for last 10,000,000: 15s. Last read position: chr19:48,469,437
INFO 2026-06-08 09:39:48 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:08s. Time for last 10,000,000: 15s. Last read position: chr20:32,149,637
INFO 2026-06-08 09:40:03 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:23s. Time for last 10,000,000: 15s. Last read position: chr21:8,210,398
INFO 2026-06-08 09:40:19 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:39s. Time for last 10,000,000: 15s. Last read position: chr22:23,295,115
INFO 2026-06-08 09:40:34 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:54s. Time for last 10,000,000: 15s. Last read position: chr22:46,394,202
INFO 2026-06-08 09:40:50 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:10s. Time for last 10,000,000: 15s. Last read position: chrX:71,290,753
INFO 2026-06-08 09:41:06 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:26s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-08 09:41:10 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:41:10 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:41:10 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:41:10 MarkDuplicates Before output close freeMemory: 203907000; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:41:10 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:41:10 MarkDuplicates After output close freeMemory: 104151464; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:41:10 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.62 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory