Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/954a3b4de3bfbfc4e83c29dd233650/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/a215a52654cec40c0e000d61ad2c83/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/5ae03b4908a5dea954543c504050f1/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/954a3b4de3bfbfc4e83c29dd233650/.command.run
==> STAGING COMPLETE (5 inputs)
processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: 659_bQZ-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
processing 659_bQZ-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam ... Finished