Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/7bc43d1b188f1951d7651d721c5f66/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/7bc43d1b188f1951d7651d721c5f66/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/970c326e18c1b31d1179b629d8c796/659_bCu-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/dc1834895b83c79c0cf188b3422e6a/659_bCu-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bCu-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (5127082) splicing reads. 172250 splicing junctions. 144676 known splicing junctions. 27574 novel splicing junctions.
sampling 10% (10254164) splicing reads. 193284 splicing junctions. 154484 known splicing junctions. 38800 novel splicing junctions.
sampling 15% (15381246) splicing reads. 203820 splicing junctions. 158572 known splicing junctions. 45248 novel splicing junctions.
sampling 20% (20508328) splicing reads. 210429 splicing junctions. 160840 known splicing junctions. 49589 novel splicing junctions.
sampling 25% (25635410) splicing reads. 214806 splicing junctions. 162271 known splicing junctions. 52535 novel splicing junctions.
sampling 30% (30762492) splicing reads. 217988 splicing junctions. 163213 known splicing junctions. 54775 novel splicing junctions.
sampling 35% (35889574) splicing reads. 220422 splicing junctions. 163909 known splicing junctions. 56513 novel splicing junctions.
sampling 40% (41016656) splicing reads. 222414 splicing junctions. 164443 known splicing junctions. 57971 novel splicing junctions.
sampling 45% (46143738) splicing reads. 224074 splicing junctions. 164882 known splicing junctions. 59192 novel splicing junctions.
sampling 50% (51270820) splicing reads. 225418 splicing junctions. 165223 known splicing junctions. 60195 novel splicing junctions.
sampling 55% (56397902) splicing reads. 226546 splicing junctions. 165485 known splicing junctions. 61061 novel splicing junctions.
sampling 60% (61524984) splicing reads. 227522 splicing junctions. 165693 known splicing junctions. 61829 novel splicing junctions.
sampling 65% (66652066) splicing reads. 228387 splicing junctions. 165891 known splicing junctions. 62496 novel splicing junctions.
sampling 70% (71779148) splicing reads. 229037 splicing junctions. 166042 known splicing junctions. 62995 novel splicing junctions.
sampling 75% (76906230) splicing reads. 229588 splicing junctions. 166170 known splicing junctions. 63418 novel splicing junctions.
sampling 80% (82033312) splicing reads. 230067 splicing junctions. 166281 known splicing junctions. 63786 novel splicing junctions.
sampling 85% (87160394) splicing reads. 230421 splicing junctions. 166353 known splicing junctions. 64068 novel splicing junctions.
sampling 90% (92287476) splicing reads. 230716 splicing junctions. 166426 known splicing junctions. 64290 novel splicing junctions.
sampling 95% (97414558) splicing reads. 230917 splicing junctions. 166473 known splicing junctions. 64444 novel splicing junctions.
sampling 100% (102541641) splicing reads. 231080 splicing junctions. 166505 known splicing junctions. 64575 novel splicing junctions.
null device 
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