Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/cf2eaa5fe9da2fa58b8e058148131d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/8d96d4b5acc0cac313fbd6c04aba05/659_bCu-T1-TRNA-1_A23MVY2LT4_2_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/cf2eaa5fe9da2fa58b8e058148131d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/8d96d4b5acc0cac313fbd6c04aba05/659_bCu-T1-TRNA-1_A23MVY2LT4_2_R1.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory