Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/e841c1d85ab02f7050a6aae839984e/659_bGc-T1-TRNA-1_A23MVY2LT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/45e95b9489b60da2fbf546840f1761/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/45e95b9489b60da2fbf546840f1761/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/0ffb2ac59ef9ecf859877d06daa13a/659_bGc-T1-TRNA-1_A23MVY2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
KIF5B--RET
starfusion
arriba
NOTCH2--NBPF11
starfusion
TLK2P1--AC110079.1
starfusion
TVP23C--CDRT4
starfusion
arriba
HSD17B4--MT-RNR2
starfusion
CLIC2--BX571846.1
starfusion
arriba
CLIC2--TMLHE-AS1
starfusion
arriba
ADAMTS12--ADAMTS7P3
starfusion
STX16--NPEPL1
starfusion
arriba
CELSR1--CELSR1
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
PCDHA3--PCDHAC1
arriba
PCDHA3--PCDHAC2
arriba
PCDHA3--PCDHA13
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
KLRC4--KLRK1
arriba
0%| | 0/27 [00:00<?, ?it/s]
Processing KIF5B--RET: 0%| | 0/27 [00:00<?, ?it/s]
Processing KIF5B--RET: 4%|▎ | 1/27 [00:00<00:02, 9.25it/s]
Processing NOTCH2--NBPF11: 4%|▎ | 1/27 [00:00<00:02, 9.25it/s]
Processing NOTCH2--NBPF11: 7%|▋ | 2/27 [00:00<00:02, 9.48it/s]
Processing TLK2P1--AC110079.1: 7%|▋ | 2/27 [00:00<00:02, 9.48it/s]
Processing TLK2P1--AC110079.1: 11%|█ | 3/27 [00:00<00:02, 9.56it/s]
Processing TVP23C--CDRT4: 11%|█ | 3/27 [00:00<00:02, 9.56it/s]
Processing TVP23C--CDRT4: 15%|█▍ | 4/27 [00:00<00:02, 9.59it/s]
Processing HSD17B4--MT-RNR2: 15%|█▍ | 4/27 [00:00<00:02, 9.59it/s]
Processing HSD17B4--MT-RNR2: 19%|█▊ | 5/27 [00:00<00:02, 9.61it/s]
Processing CLIC2--BX571846.1: 19%|█▊ | 5/27 [00:00<00:02, 9.61it/s]
Processing CLIC2--BX571846.1: 22%|██▏ | 6/27 [00:00<00:02, 9.62it/s]
Processing CLIC2--TMLHE-AS1: 22%|██▏ | 6/27 [00:00<00:02, 9.62it/s]
Processing CLIC2--TMLHE-AS1: 26%|██▌ | 7/27 [00:00<00:02, 9.63it/s]
Processing ADAMTS12--ADAMTS7P3: 26%|██▌ | 7/27 [00:00<00:02, 9.63it/s]
Processing ADAMTS12--ADAMTS7P3: 30%|██▉ | 8/27 [00:00<00:01, 9.63it/s]
Processing STX16--NPEPL1: 30%|██▉ | 8/27 [00:00<00:01, 9.63it/s]
Processing STX16--NPEPL1: 33%|███▎ | 9/27 [00:00<00:01, 9.64it/s]
Processing CELSR1--CELSR1: 33%|███▎ | 9/27 [00:00<00:01, 9.64it/s]
Processing CELSR1--CELSR1: 37%|███▋ | 10/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA8: 37%|███▋ | 10/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA8: 41%|████ | 11/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 41%|████ | 11/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 44%|████▍ | 12/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC4: 44%|████▍ | 12/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC4: 48%|████▊ | 13/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC5: 48%|████▊ | 13/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC5: 52%|█████▏ | 14/27 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA10: 52%|█████▏ | 14/27 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA10: 56%|█████▌ | 15/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA9: 56%|█████▌ | 15/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA9: 59%|█████▉ | 16/27 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA11: 59%|█████▉ | 16/27 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGA11: 63%|██████▎ | 17/27 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB7: 63%|██████▎ | 17/27 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGB7: 67%|██████▋ | 18/27 [00:01<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGA12: 67%|██████▋ | 18/27 [00:01<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGA12: 70%|███████ | 19/27 [00:01<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 70%|███████ | 19/27 [00:01<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 74%|███████▍ | 20/27 [00:02<00:00, 9.64it/s]
Processing PCDHA3--PCDHAC1: 74%|███████▍ | 20/27 [00:02<00:00, 9.64it/s]
Processing PCDHA3--PCDHAC1: 78%|███████▊ | 21/27 [00:02<00:00, 9.64it/s]
Processing PCDHA3--PCDHAC2: 78%|███████▊ | 21/27 [00:02<00:00, 9.64it/s]
Processing PCDHA3--PCDHAC2: 81%|████████▏ | 22/27 [00:02<00:00, 9.65it/s]
Processing PCDHA3--PCDHA13: 81%|████████▏ | 22/27 [00:02<00:00, 9.65it/s]
Processing PCDHA3--PCDHA13: 85%|████████▌ | 23/27 [00:02<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC1: 85%|████████▌ | 23/27 [00:02<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC1: 89%|████████▉ | 24/27 [00:02<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC2: 89%|████████▉ | 24/27 [00:02<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC2: 93%|█████████▎| 25/27 [00:02<00:00, 9.65it/s]
Processing PCDHA10--PCDHA13: 93%|█████████▎| 25/27 [00:02<00:00, 9.65it/s]
Processing PCDHA10--PCDHA13: 96%|█████████▋| 26/27 [00:02<00:00, 9.65it/s]
Processing KLRC4--KLRK1: 96%|█████████▋| 26/27 [00:02<00:00, 9.65it/s]
Processing KLRC4--KLRK1: 100%|██████████| 27/27 [00:02<00:00, 9.65it/s]
Processing KLRC4--KLRK1: 100%|██████████| 27/27 [00:02<00:00, 9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory