.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (FFPE_HD789_01_RNA_13_A23MVY2LT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/0fd26e6bf0ff0b20519026015cb6f3/.command.log
Size: 509 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (FFPE_HD789_01_RNA_13_A23MVY2LT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/3a667a9a1dc2003064fcedc8211969/FFPE_HD789_01_RNA_13_A23MVY2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/0fd26e6bf0ff0b20519026015cb6f3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/0fd26e6bf0ff0b20519026015cb6f3/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory