Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/88a81337442ba432134f1623a5dda6/659_bGc-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/afab703a3e1efe4ea8dbbad8589288/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/afab703a3e1efe4ea8dbbad8589288/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bGc-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGc-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_bGc-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:54:35.428 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:54:35 GMT 2026] MarkDuplicates --INPUT 659_bGc-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGc-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_bGc-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:54:35 GMT 2026] Executing as ?@nf-88afab703a3e1efe4ea8dbbad8589288-1dd28-mbb4p on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:54:35 MarkDuplicates Start of doWork freeMemory: 105831240; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:54:35 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:54:35 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,354,772
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 3815 as yet unmatched pairs. 815 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 3s. Last read position: chr1:2,303,839
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 6955 as yet unmatched pairs. 782 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:6,469,386
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 9516 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:9,262,164
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 12459 as yet unmatched pairs. 367 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:11,923,011
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 15225 as yet unmatched pairs. 388 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:15,934,462
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 17930 as yet unmatched pairs. 282 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:19,119,585
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 20502 as yet unmatched pairs. 333 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 4s. Last read position: chr1:21,217,717
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 23700 as yet unmatched pairs. 723 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:21,848,721
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 26772 as yet unmatched pairs. 994 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:22,639,103
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 31284 as yet unmatched pairs. 2622 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:23,975,061
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 31470 as yet unmatched pairs. 380 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:26,774,421
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 34069 as yet unmatched pairs. 451 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:27,850,252
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 36685 as yet unmatched pairs. 183 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:31,652,808
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 39712 as yet unmatched pairs. 323 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:33,013,320
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 42466 as yet unmatched pairs. 269 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:36,287,117
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 45852 as yet unmatched pairs. 950 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:39,333,036
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 48257 as yet unmatched pairs. 819 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:39,447,696
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 51240 as yet unmatched pairs. 1416 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:41,511,102
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 52495 as yet unmatched pairs. 204 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:43,703,726
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 55367 as yet unmatched pairs. 212 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:46,286,124
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 58323 as yet unmatched pairs. 540 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:51,294,471
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 60571 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:54,205,110
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 63289 as yet unmatched pairs. 269 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:63,636,346
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 65846 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:78,013,284
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 68477 as yet unmatched pairs. 166 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:92,324,225
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 70968 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:101,239,955
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 73648 as yet unmatched pairs. 428 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:110,340,964
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 76305 as yet unmatched pairs. 408 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:113,758,696
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 78698 as yet unmatched pairs. 108 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:116,390,168
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 82351 as yet unmatched pairs. 1326 records in RAM.
INFO 2026-06-08 08:55:45 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:119,919,468
INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 86132 as yet unmatched pairs. 2428 records in RAM.
INFO 2026-06-08 08:55:47 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:120,459,360
INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 86367 as yet unmatched pairs. 269 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:145,993,835
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 91652 as yet unmatched pairs. 3783 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:146,969,460
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 89804 as yet unmatched pairs. 370 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:148,540,182
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 91827 as yet unmatched pairs. 274 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,585
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 92875 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:150,579,307
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 97266 as yet unmatched pairs. 1822 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:151,365,767
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 99332 as yet unmatched pairs. 1440 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:153,615,004
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 101053 as yet unmatched pairs. 628 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:153,958,362
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 103813 as yet unmatched pairs. 114 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:154,544,351
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 106117 as yet unmatched pairs. 77 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:155,172,751
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 110601 as yet unmatched pairs. 1935 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:155,190,029
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 112527 as yet unmatched pairs. 1842 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:155,200,497
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 112485 as yet unmatched pairs. 277 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:155,952,707
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 115090 as yet unmatched pairs. 369 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:156,207,963
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 117867 as yet unmatched pairs. 203 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:159,918,563
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 120539 as yet unmatched pairs. 107 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:161,169,703
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 123168 as yet unmatched pairs. 145 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:167,936,937
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 126135 as yet unmatched pairs. 672 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:171,557,834
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 128382 as yet unmatched pairs. 551 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:180,155,027
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 131737 as yet unmatched pairs. 1287 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:183,130,368
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 133450 as yet unmatched pairs. 241 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:186,307,265
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 135830 as yet unmatched pairs. 296 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:197,159,497
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 138018 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:202,777,074
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 140890 as yet unmatched pairs. 380 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:204,410,390
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 143203 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:206,932,546
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 147017 as yet unmatched pairs. 1420 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:207,321,829
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 149953 as yet unmatched pairs. 1621 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:211,278,128
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 150987 as yet unmatched pairs. 214 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:223,619,549
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 154020 as yet unmatched pairs. 741 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:225,844,561
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 156941 as yet unmatched pairs. 1059 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr1:228,268,786
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 158991 as yet unmatched pairs. 299 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:234,429,233
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 161976 as yet unmatched pairs. 220 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr1:237,698,980
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 164817 as yet unmatched pairs. 61 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr1:248,855,809
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 167398 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 3s. Last read position: chr2:11,257,137
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 170224 as yet unmatched pairs. 169520 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:20,448,076
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 173441 as yet unmatched pairs. 172731 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:27,040,353
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 175851 as yet unmatched pairs. 175124 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:28,776,931
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 182180 as yet unmatched pairs. 181437 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,254
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 234040 as yet unmatched pairs. 176370 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 511224 as yet unmatched pairs. 160478 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 1193929 as yet unmatched pairs. 121196 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 1380793 as yet unmatched pairs. 110209 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,408
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 1402635 as yet unmatched pairs. 108998 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:37,227,956
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 1460135 as yet unmatched pairs. 103616 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:43,398,003
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 1458134 as yet unmatched pairs. 101601 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:46,377,937
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 1459690 as yet unmatched pairs. 103147 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:54,599,159
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 1452541 as yet unmatched pairs. 95981 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:55,026,793
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 1450077 as yet unmatched pairs. 93512 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:63,599,201
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 1447491 as yet unmatched pairs. 90904 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:70,214,349
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 1444510 as yet unmatched pairs. 87921 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:74,456,167
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 1441758 as yet unmatched pairs. 85157 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:85,599,206
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 1439139 as yet unmatched pairs. 82535 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:85,663,469
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 1450368 as yet unmatched pairs. 93757 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:85,665,708
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 1448055 as yet unmatched pairs. 91441 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:86,603,943
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 1430473 as yet unmatched pairs. 73852 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:96,613,598
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 1428303 as yet unmatched pairs. 71665 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:101,277,238
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 1425933 as yet unmatched pairs. 69285 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,302
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 1424422 as yet unmatched pairs. 67769 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:110,567,448
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 1422971 as yet unmatched pairs. 66301 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:119,263,225
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 1420253 as yet unmatched pairs. 63566 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:130,152,468
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 1417486 as yet unmatched pairs. 60791 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:144,399,559
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 1415154 as yet unmatched pairs. 58445 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:159,875,590
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 1412297 as yet unmatched pairs. 55574 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:171,435,112
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 1409802 as yet unmatched pairs. 53059 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:178,557,281
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 1407419 as yet unmatched pairs. 50672 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:186,590,348
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 1405469 as yet unmatched pairs. 48692 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:189,795,930
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 1402098 as yet unmatched pairs. 45304 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:197,489,224
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 1399646 as yet unmatched pairs. 42844 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:203,190,339
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 1397022 as yet unmatched pairs. 40198 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:210,314,882
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 1394342 as yet unmatched pairs. 37507 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,370,374
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 1408372 as yet unmatched pairs. 51537 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,360
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 1397963 as yet unmatched pairs. 41126 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,268
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 1397028 as yet unmatched pairs. 40189 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:215,394,628
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 1390005 as yet unmatched pairs. 33166 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,281
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 1392162 as yet unmatched pairs. 35320 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:215,422,106
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 1385466 as yet unmatched pairs. 28618 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,441
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 1385611 as yet unmatched pairs. 28760 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:217,818,298
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 1377780 as yet unmatched pairs. 20923 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:218,387,808
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 1372818 as yet unmatched pairs. 15957 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:219,565,472
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 1370098 as yet unmatched pairs. 13233 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:230,243,735
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 1366922 as yet unmatched pairs. 10041 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:235,670,259
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 1364911 as yet unmatched pairs. 8016 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:237,527,496
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 1364434 as yet unmatched pairs. 7528 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:241,099,782
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 1358764 as yet unmatched pairs. 1824 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr3:5,202,990
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 1356040 as yet unmatched pairs. 74520 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:12,604,135
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 1354517 as yet unmatched pairs. 72989 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:15,589,588
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 1350606 as yet unmatched pairs. 69067 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:32,369,885
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 1348193 as yet unmatched pairs. 66614 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:38,122,331
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 1345305 as yet unmatched pairs. 63723 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:41,233,786
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 1343298 as yet unmatched pairs. 61700 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:45,967,259
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 1340235 as yet unmatched pairs. 58626 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:47,909,616
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 1337472 as yet unmatched pairs. 55855 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:49,018,398
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 1334499 as yet unmatched pairs. 52876 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 2s. Last read position: chr3:49,531,498
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 1332104 as yet unmatched pairs. 50464 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:50,326,122
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 1329113 as yet unmatched pairs. 47461 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr3:52,228,909
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 1326091 as yet unmatched pairs. 44433 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:53,225,812
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 1324098 as yet unmatched pairs. 42439 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:61,562,269
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 1321626 as yet unmatched pairs. 39957 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:72,997,061
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 1318378 as yet unmatched pairs. 36683 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:100,713,659
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 1316133 as yet unmatched pairs. 34418 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:112,605,465
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 1313570 as yet unmatched pairs. 31844 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:121,691,649
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 1310899 as yet unmatched pairs. 29157 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:124,269,135
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 1308335 as yet unmatched pairs. 26574 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:128,486,078
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 1305507 as yet unmatched pairs. 23739 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:130,565,412
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 1302827 as yet unmatched pairs. 21057 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:136,854,798
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 1299834 as yet unmatched pairs. 18062 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:149,520,748
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 1298421 as yet unmatched pairs. 16639 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:157,148,275
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 1295042 as yet unmatched pairs. 13245 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:172,506,495
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 1292673 as yet unmatched pairs. 10864 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:184,181,110
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 1290379 as yet unmatched pairs. 8567 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:186,787,827
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 1288311 as yet unmatched pairs. 6483 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr3:193,483,947
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 1285043 as yet unmatched pairs. 3195 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:197,065,792
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 1282663 as yet unmatched pairs. 809 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr4:1,312,033
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 1279747 as yet unmatched pairs. 52203 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:2,963,211
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 1276430 as yet unmatched pairs. 48880 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:8,228,162
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 1274011 as yet unmatched pairs. 46459 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:24,808,342
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 1270942 as yet unmatched pairs. 43389 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr4:25,667,880
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 1281988 as yet unmatched pairs. 54434 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 2s. Last read position: chr4:25,674,333
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 1275410 as yet unmatched pairs. 47847 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:25,678,230
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 1263874 as yet unmatched pairs. 36304 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:41,360,824
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 1262027 as yet unmatched pairs. 34440 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:54,261,283
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 1260227 as yet unmatched pairs. 32634 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:56,990,773
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 1256724 as yet unmatched pairs. 29124 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:75,012,466
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 1253983 as yet unmatched pairs. 26369 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:78,551,793
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 1251160 as yet unmatched pairs. 23535 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:86,693,593
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 1249448 as yet unmatched pairs. 21806 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr4:88,278,089
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 1246524 as yet unmatched pairs. 18877 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:99,949,282
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 1244085 as yet unmatched pairs. 16424 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:112,432,454
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 1241542 as yet unmatched pairs. 13853 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr4:122,935,745
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 1239251 as yet unmatched pairs. 11549 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr4:142,173,471
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 1236743 as yet unmatched pairs. 9024 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr4:151,283,046
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 1234462 as yet unmatched pairs. 6735 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:168,878,128
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 1232926 as yet unmatched pairs. 5196 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:185,339,407
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 1229227 as yet unmatched pairs. 1486 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr5:1,466,833
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 1227701 as yet unmatched pairs. 97427 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:13,850,781
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 1223466 as yet unmatched pairs. 93179 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:14,461,268
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 1221844 as yet unmatched pairs. 91552 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr5:32,088,532
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 1218017 as yet unmatched pairs. 87706 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:38,511,810
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 1216358 as yet unmatched pairs. 86034 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:43,380,121
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 1213273 as yet unmatched pairs. 82934 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:56,881,738
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 1210942 as yet unmatched pairs. 80589 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr5:69,228,211
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 1208675 as yet unmatched pairs. 78311 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:73,502,927
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 1206954 as yet unmatched pairs. 76589 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:81,615,518
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 1204001 as yet unmatched pairs. 73630 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:93,585,201
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 1201847 as yet unmatched pairs. 71472 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:102,974,307
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 1199504 as yet unmatched pairs. 69123 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:119,493,822
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 1197382 as yet unmatched pairs. 66976 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:132,896,777
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 1194001 as yet unmatched pairs. 63593 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:138,325,829
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 1191277 as yet unmatched pairs. 60867 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:139,478,324
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 1189287 as yet unmatched pairs. 58867 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:140,882,383
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 1186365 as yet unmatched pairs. 55909 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:141,578,542
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 1184167 as yet unmatched pairs. 53697 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:147,397,688
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 1181424 as yet unmatched pairs. 50936 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:148,827,506
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 1178518 as yet unmatched pairs. 48021 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:150,133,722
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 1177516 as yet unmatched pairs. 47014 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,190
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 1241448 as yet unmatched pairs. 110932 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,609
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 1217099 as yet unmatched pairs. 86581 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,086
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 1208345 as yet unmatched pairs. 77827 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,267
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 1222899 as yet unmatched pairs. 92380 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,193
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 1184938 as yet unmatched pairs. 54410 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr5:150,648,938
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 1161082 as yet unmatched pairs. 30551 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:151,259,794
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 1156659 as yet unmatched pairs. 26128 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:157,817,442
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 1154360 as yet unmatched pairs. 23811 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:171,390,050
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 1160769 as yet unmatched pairs. 30217 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:172,768,867
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 1152505 as yet unmatched pairs. 21950 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:177,211,653
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 1146506 as yet unmatched pairs. 15948 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:179,616,142
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 1144442 as yet unmatched pairs. 13877 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:179,823,889
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 1148538 as yet unmatched pairs. 17965 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr5:180,590,113
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 1149955 as yet unmatched pairs. 19377 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr5:180,590,730
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 1165497 as yet unmatched pairs. 34919 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr5:181,260,258
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 1130756 as yet unmatched pairs. 168 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr6:7,231,156
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 1128961 as yet unmatched pairs. 87269 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:12,123,138
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 1125393 as yet unmatched pairs. 83688 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:24,716,285
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 1123150 as yet unmatched pairs. 81425 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:28,904,469
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 1120991 as yet unmatched pairs. 79253 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:30,553,385
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 1118245 as yet unmatched pairs. 76500 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:31,170,233
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 1115903 as yet unmatched pairs. 74158 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:31,631,177
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 1113519 as yet unmatched pairs. 71742 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,972
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 1110448 as yet unmatched pairs. 68670 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:31,995,984
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 1109433 as yet unmatched pairs. 67655 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr6:32,052,786
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 1107864 as yet unmatched pairs. 66080 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:32,095,929
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 1104813 as yet unmatched pairs. 63019 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:32,222,701
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 1101381 as yet unmatched pairs. 59583 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:32,938,773
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 1098987 as yet unmatched pairs. 57185 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:33,275,996
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 1097077 as yet unmatched pairs. 55273 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:33,658,814
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 1093234 as yet unmatched pairs. 51428 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:35,424,566
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 1090068 as yet unmatched pairs. 48257 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:37,450,249
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 1087393 as yet unmatched pairs. 45563 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:41,742,383
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 1093539 as yet unmatched pairs. 51700 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:43,045,605
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 1081978 as yet unmatched pairs. 40136 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:44,230,461
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 1079149 as yet unmatched pairs. 37292 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:49,441,844
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 1076462 as yet unmatched pairs. 34597 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:56,628,082
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 1074349 as yet unmatched pairs. 32459 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:78,970,877
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 1071843 as yet unmatched pairs. 29942 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:96,537,491
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 1069218 as yet unmatched pairs. 27301 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:111,262,264
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 1067064 as yet unmatched pairs. 25142 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:117,366,171
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 1066633 as yet unmatched pairs. 24695 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:125,889,901
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 1061514 as yet unmatched pairs. 19573 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:133,889,460
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 1060205 as yet unmatched pairs. 18261 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr6:139,373,610
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 1058567 as yet unmatched pairs. 16617 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr6:148,543,952
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 1054705 as yet unmatched pairs. 12740 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:152,326,556
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 1051754 as yet unmatched pairs. 9778 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:158,767,326
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 1054245 as yet unmatched pairs. 12262 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr6:159,780,462
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 1046264 as yet unmatched pairs. 4276 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr6:167,951,638
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 1043704 as yet unmatched pairs. 1708 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 2s. Last read position: chr7:1,504,043
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 1040413 as yet unmatched pairs. 72618 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:5,371,151
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 1038158 as yet unmatched pairs. 70351 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,567
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 1041204 as yet unmatched pairs. 73386 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:7,673,388
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 1031416 as yet unmatched pairs. 63568 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:23,307,879
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 1029142 as yet unmatched pairs. 61289 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:30,922,106
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 1030475 as yet unmatched pairs. 62609 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:44,014,447
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 1023907 as yet unmatched pairs. 56031 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:44,565,964
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 1021425 as yet unmatched pairs. 53545 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:51,316,667
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 1018460 as yet unmatched pairs. 50563 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 65s. Last read position: chr7:64,815,034
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 1015674 as yet unmatched pairs. 47763 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr7:73,279,989
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 1013740 as yet unmatched pairs. 45823 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr7:74,060,169
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 1013201 as yet unmatched pairs. 45283 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr7:75,423,057
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 1008826 as yet unmatched pairs. 40901 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:77,173,304
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 1005723 as yet unmatched pairs. 37796 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:92,079,325
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 1003796 as yet unmatched pairs. 35862 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr7:94,428,454
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 1000834 as yet unmatched pairs. 32897 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr7:99,038,486
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 998012 as yet unmatched pairs. 30070 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,433,696
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 995525 as yet unmatched pairs. 27577 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr7:101,232,870
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 992566 as yet unmatched pairs. 24614 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr7:102,666,115
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 991570 as yet unmatched pairs. 23602 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr7:107,959,469
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 989772 as yet unmatched pairs. 21792 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr7:117,297,678
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 986244 as yet unmatched pairs. 18259 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr7:128,085,714
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 986660 as yet unmatched pairs. 18675 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 2s. Last read position: chr7:134,950,491
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 982046 as yet unmatched pairs. 14045 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr7:139,064,893
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 978727 as yet unmatched pairs. 10726 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr7:143,268,146
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 976264 as yet unmatched pairs. 8259 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr7:149,455,916
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 974067 as yet unmatched pairs. 6062 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr7:151,226,383
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 970627 as yet unmatched pairs. 2620 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:166,244
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 968019 as yet unmatched pairs. 62825 records in RAM.
INFO 2026-06-08 09:03:38 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:13,100,511
INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 965623 as yet unmatched pairs. 60418 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:22,002,217
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 963038 as yet unmatched pairs. 57829 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:22,162,728
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 990159 as yet unmatched pairs. 84947 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:22,163,528
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 983751 as yet unmatched pairs. 78531 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:22,164,374
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 954352 as yet unmatched pairs. 49129 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:23,007,487
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 952632 as yet unmatched pairs. 47402 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:27,598,576
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 949525 as yet unmatched pairs. 44295 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr8:34,874,541
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 946334 as yet unmatched pairs. 41096 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:38,428,359
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 945618 as yet unmatched pairs. 40365 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:38,838,408
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 942845 as yet unmatched pairs. 37578 records in RAM.
INFO 2026-06-08 09:03:56 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr8:43,169,210
INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 939349 as yet unmatched pairs. 34081 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:56,073,210
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 940282 as yet unmatched pairs. 35008 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr8:70,128,789
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 934059 as yet unmatched pairs. 28780 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr8:89,955,428
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 931250 as yet unmatched pairs. 25965 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr8:100,261,573
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 928625 as yet unmatched pairs. 23336 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr8:107,958,173
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 926118 as yet unmatched pairs. 20814 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr8:123,024,994
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 923549 as yet unmatched pairs. 18242 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr8:140,275,689
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 921027 as yet unmatched pairs. 15698 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr8:143,598,927
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 917724 as yet unmatched pairs. 12389 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,021
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 916135 as yet unmatched pairs. 10799 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,844
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 914398 as yet unmatched pairs. 9062 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,924,495
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 912176 as yet unmatched pairs. 6827 records in RAM.
INFO 2026-06-08 09:04:15 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr8:144,309,356
INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 908152 as yet unmatched pairs. 2799 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 2s. Last read position: chr9:711,146
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 905531 as yet unmatched pairs. 61918 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:14,120,416
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 904995 as yet unmatched pairs. 61375 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:26,923,228
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 900155 as yet unmatched pairs. 56521 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:34,241,897
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 897918 as yet unmatched pairs. 54280 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:35,685,107
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 895140 as yet unmatched pairs. 51501 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:37,442,246
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 892098 as yet unmatched pairs. 48446 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:72,357,046
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 890611 as yet unmatched pairs. 46949 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:86,946,306
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 887178 as yet unmatched pairs. 43495 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:93,543,466
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 884881 as yet unmatched pairs. 41173 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:99,222,619
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 882726 as yet unmatched pairs. 39009 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr9:110,201,307
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 879408 as yet unmatched pairs. 35689 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:113,584,181
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 876323 as yet unmatched pairs. 32604 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr9:120,833,393
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 873584 as yet unmatched pairs. 29861 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr9:122,823,089
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 870692 as yet unmatched pairs. 26963 records in RAM.
INFO 2026-06-08 09:04:39 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr9:127,506,797
INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 869027 as yet unmatched pairs. 25284 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:128,178,438
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 865363 as yet unmatched pairs. 21612 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr9:128,956,348
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 862117 as yet unmatched pairs. 18363 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 2s. Last read position: chr9:131,087,754
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 859555 as yet unmatched pairs. 15797 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr9:133,056,848
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 856924 as yet unmatched pairs. 13162 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr9:134,750,573
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 854681 as yet unmatched pairs. 10909 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr9:136,476,825
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 852118 as yet unmatched pairs. 8345 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr9:136,943,432
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 848361 as yet unmatched pairs. 4584 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr9:137,460,664
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 844866 as yet unmatched pairs. 1076 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:5,768,231
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 842332 as yet unmatched pairs. 48948 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:17,229,380
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 841275 as yet unmatched pairs. 47882 records in RAM.
INFO 2026-06-08 09:04:58 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr10:26,751,770
INFO 2026-06-08 09:04:58 MarkDuplicates Tracking 837224 as yet unmatched pairs. 43819 records in RAM.
INFO 2026-06-08 09:05:00 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:32,038,785
INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 836281 as yet unmatched pairs. 42871 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr10:43,196,475
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 832245 as yet unmatched pairs. 38831 records in RAM.
INFO 2026-06-08 09:05:03 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr10:46,015,223
INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 832407 as yet unmatched pairs. 38990 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:59,251,575
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 827960 as yet unmatched pairs. 34536 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:68,730,152
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 825203 as yet unmatched pairs. 31773 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:72,275,017
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 824507 as yet unmatched pairs. 31065 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr10:74,109,033
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 820513 as yet unmatched pairs. 27070 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr10:79,558,893
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 823600 as yet unmatched pairs. 30141 records in RAM.
INFO 2026-06-08 09:05:12 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr10:79,937,999
INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 815990 as yet unmatched pairs. 22528 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:87,715,741
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 813697 as yet unmatched pairs. 20224 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:94,031,931
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 810740 as yet unmatched pairs. 17247 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:97,936,356
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 808285 as yet unmatched pairs. 14781 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr10:102,141,611
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 805609 as yet unmatched pairs. 12094 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr10:109,880,185
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 802622 as yet unmatched pairs. 9098 records in RAM.
INFO 2026-06-08 09:05:22 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr10:118,730,365
INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 800174 as yet unmatched pairs. 6643 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr10:122,211,127
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 798412 as yet unmatched pairs. 4863 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 2s. Last read position: chr10:127,433,308
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 795572 as yet unmatched pairs. 2001 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 3s. Last read position: chr11:309,070
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 795965 as yet unmatched pairs. 96056 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:722,672
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 789824 as yet unmatched pairs. 89908 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr11:1,752,986
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 786231 as yet unmatched pairs. 86313 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:2,885,270
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 783525 as yet unmatched pairs. 83605 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:6,615,220
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 780802 as yet unmatched pairs. 80882 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:10,514,978
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 777966 as yet unmatched pairs. 78042 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:14,804,047
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 775039 as yet unmatched pairs. 75114 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:32,934,663
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 772665 as yet unmatched pairs. 72736 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:43,448,096
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 770355 as yet unmatched pairs. 70416 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:47,157,847
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 767592 as yet unmatched pairs. 67648 records in RAM.
INFO 2026-06-08 09:05:45 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:57,320,641
INFO 2026-06-08 09:05:45 MarkDuplicates Tracking 765290 as yet unmatched pairs. 65339 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:59,195,206
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 762462 as yet unmatched pairs. 62510 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:61,964,999
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 761729 as yet unmatched pairs. 61771 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,851
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 760035 as yet unmatched pairs. 60073 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:62,528,936
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 756878 as yet unmatched pairs. 56916 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:62,602,303
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 753201 as yet unmatched pairs. 53239 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:63,974,687
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 751091 as yet unmatched pairs. 51125 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:64,854,771
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 746908 as yet unmatched pairs. 46939 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:65,546,444
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 745042 as yet unmatched pairs. 45057 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:65,779,970
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 740691 as yet unmatched pairs. 40699 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr11:66,639,977
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 738671 as yet unmatched pairs. 38675 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr11:67,611,543
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 734973 as yet unmatched pairs. 34970 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:69,651,184
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 733655 as yet unmatched pairs. 33650 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr11:72,195,274
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 729942 as yet unmatched pairs. 29924 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:73,976,869
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 726215 as yet unmatched pairs. 26190 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:78,073,050
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 723548 as yet unmatched pairs. 23523 records in RAM.
INFO 2026-06-08 09:06:12 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:94,768,369
INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 720841 as yet unmatched pairs. 20805 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:102,229,799
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 720657 as yet unmatched pairs. 20618 records in RAM.
INFO 2026-06-08 09:06:15 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:114,059,727
INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 715977 as yet unmatched pairs. 15937 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:114,252,097
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 716248 as yet unmatched pairs. 16199 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:117,362,446
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 710252 as yet unmatched pairs. 10202 records in RAM.
INFO 2026-06-08 09:06:20 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:118,901,139
INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 708221 as yet unmatched pairs. 8168 records in RAM.
INFO 2026-06-08 09:06:22 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:122,946,558
INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 705199 as yet unmatched pairs. 5142 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr11:128,807,175
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 703076 as yet unmatched pairs. 3017 records in RAM.
INFO 2026-06-08 09:06:25 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr12:197,868
INFO 2026-06-08 09:06:25 MarkDuplicates Tracking 700004 as yet unmatched pairs. 86481 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:2,803,155
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 697620 as yet unmatched pairs. 84092 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:6,056,891
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 696406 as yet unmatched pairs. 82876 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:6,599,916
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 692244 as yet unmatched pairs. 78714 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:7,065,142
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 690194 as yet unmatched pairs. 76660 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:9,067,724
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 689014 as yet unmatched pairs. 75476 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:9,091,127
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 687965 as yet unmatched pairs. 74424 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr12:9,115,791
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 682407 as yet unmatched pairs. 68866 records in RAM.
INFO 2026-06-08 09:06:40 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:14,424,314
INFO 2026-06-08 09:06:40 MarkDuplicates Tracking 680451 as yet unmatched pairs. 66904 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:26,122,941
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 677141 as yet unmatched pairs. 63587 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:40,299,130
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 675549 as yet unmatched pairs. 61978 records in RAM.
INFO 2026-06-08 09:06:45 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:47,794,783
INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 672656 as yet unmatched pairs. 59080 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:49,052,074
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 670171 as yet unmatched pairs. 56585 records in RAM.
INFO 2026-06-08 09:06:48 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:50,475,783
INFO 2026-06-08 09:06:48 MarkDuplicates Tracking 667197 as yet unmatched pairs. 53611 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,656
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 664601 as yet unmatched pairs. 51008 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:53,296,254
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 663180 as yet unmatched pairs. 49582 records in RAM.
INFO 2026-06-08 09:06:52 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,183
INFO 2026-06-08 09:06:52 MarkDuplicates Tracking 661023 as yet unmatched pairs. 47418 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:56,093,837
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 656855 as yet unmatched pairs. 43249 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:56,601,326
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 654832 as yet unmatched pairs. 41224 records in RAM.
INFO 2026-06-08 09:06:57 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:57,099,294
INFO 2026-06-08 09:06:57 MarkDuplicates Tracking 654570 as yet unmatched pairs. 40961 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:57,184,882
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 650014 as yet unmatched pairs. 36404 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:57,528,540
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 646723 as yet unmatched pairs. 33113 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:65,241,008
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 644133 as yet unmatched pairs. 30522 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:70,594,669
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 641933 as yet unmatched pairs. 28320 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:91,108,551
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 640500 as yet unmatched pairs. 26877 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:96,021,126
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 637100 as yet unmatched pairs. 23468 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:104,757,457
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 634128 as yet unmatched pairs. 20490 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 2s. Last read position: chr12:110,281,814
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 631517 as yet unmatched pairs. 17871 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:112,265,277
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 628854 as yet unmatched pairs. 15206 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:117,186,495
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 626264 as yet unmatched pairs. 12615 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr12:120,738,785
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 623141 as yet unmatched pairs. 9479 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:122,989,915
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 620252 as yet unmatched pairs. 6587 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:124,786,425
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 617688 as yet unmatched pairs. 4022 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:132,727,206
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 615079 as yet unmatched pairs. 1410 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr13:24,478,261
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 612080 as yet unmatched pairs. 24750 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr13:36,965,595
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 609739 as yet unmatched pairs. 22408 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr13:44,575,859
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 607384 as yet unmatched pairs. 20046 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr13:51,719,332
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 604397 as yet unmatched pairs. 17054 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr13:77,139,195
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 602220 as yet unmatched pairs. 14874 records in RAM.
INFO 2026-06-08 09:07:30 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr13:98,837,524
INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 599944 as yet unmatched pairs. 12595 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr13:108,229,249
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 596643 as yet unmatched pairs. 9292 records in RAM.
INFO 2026-06-08 09:07:33 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr13:110,428,494
INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 594612 as yet unmatched pairs. 7254 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr13:112,831,514
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 590916 as yet unmatched pairs. 3549 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr14:20,371,602
INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 587381 as yet unmatched pairs. 52304 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:21,391,849
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 584707 as yet unmatched pairs. 49628 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:23,357,527
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 581820 as yet unmatched pairs. 46739 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:24,416,555
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 579263 as yet unmatched pairs. 44181 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 2s. Last read position: chr14:35,539,536
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 576884 as yet unmatched pairs. 41802 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:49,778,440
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 574069 as yet unmatched pairs. 38969 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:56,296,837
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 571614 as yet unmatched pairs. 36504 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr14:64,487,296
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 569269 as yet unmatched pairs. 34154 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:69,975,776
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 566406 as yet unmatched pairs. 31285 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:74,480,710
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 568180 as yet unmatched pairs. 33045 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:74,521,918
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 563637 as yet unmatched pairs. 28500 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr14:74,812,715
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 558585 as yet unmatched pairs. 23436 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr14:77,718,075
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 556070 as yet unmatched pairs. 20912 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr14:92,116,217
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 553809 as yet unmatched pairs. 18650 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr14:94,383,113
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 557842 as yet unmatched pairs. 22682 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr14:102,005,205
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 548169 as yet unmatched pairs. 13006 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr14:103,521,383
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 545516 as yet unmatched pairs. 10353 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:104,949,583
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 542342 as yet unmatched pairs. 7178 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,308
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 545604 as yet unmatched pairs. 10426 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr14:105,838,398
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 537781 as yet unmatched pairs. 2600 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:22,554,449
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 535043 as yet unmatched pairs. 54107 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 2s. Last read position: chr15:29,733,111
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 532619 as yet unmatched pairs. 51677 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:39,581,912
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 531322 as yet unmatched pairs. 50371 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:40,900,881
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 527508 as yet unmatched pairs. 46557 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr15:42,338,398
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 525196 as yet unmatched pairs. 44241 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:43,770,248
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 523354 as yet unmatched pairs. 42397 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:45,136,553
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 522252 as yet unmatched pairs. 41291 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:48,992,334
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 517924 as yet unmatched pairs. 36963 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:55,234,780
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 514770 as yet unmatched pairs. 33806 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr15:60,351,235
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 512950 as yet unmatched pairs. 31974 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:64,088,839
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 509983 as yet unmatched pairs. 29007 records in RAM.
INFO 2026-06-08 09:08:29 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr15:66,500,086
INFO 2026-06-08 09:08:29 MarkDuplicates Tracking 509464 as yet unmatched pairs. 28475 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr15:72,046,177
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 504977 as yet unmatched pairs. 23983 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr15:74,034,514
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 505124 as yet unmatched pairs. 24130 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr15:75,361,710
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 500240 as yet unmatched pairs. 19242 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr15:78,470,558
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 495923 as yet unmatched pairs. 14925 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr15:78,939,163
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 493780 as yet unmatched pairs. 12782 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr15:84,512,300
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 491148 as yet unmatched pairs. 10148 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr15:85,655,661
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 492537 as yet unmatched pairs. 11537 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr15:89,324,198
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 486498 as yet unmatched pairs. 5496 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr15:90,919,639
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 484044 as yet unmatched pairs. 3040 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr16:55,064
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 481090 as yet unmatched pairs. 85307 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:681,246
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 478140 as yet unmatched pairs. 82355 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:1,366,283
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 475322 as yet unmatched pairs. 79534 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:1,999,671
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 471944 as yet unmatched pairs. 76154 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:2,251,351
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 468579 as yet unmatched pairs. 72788 records in RAM.
INFO 2026-06-08 09:08:54 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:2,633,778
INFO 2026-06-08 09:08:54 MarkDuplicates Tracking 465816 as yet unmatched pairs. 70017 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:2,769,054
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 464689 as yet unmatched pairs. 68886 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:3,770,947
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 460868 as yet unmatched pairs. 65061 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:4,899,072
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 457613 as yet unmatched pairs. 61803 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:11,730,698
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 455202 as yet unmatched pairs. 59388 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:14,918,829
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 452935 as yet unmatched pairs. 57113 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:15,677,801
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 451091 as yet unmatched pairs. 55269 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:16,321,011
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 449608 as yet unmatched pairs. 53785 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:18,347,981
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 448990 as yet unmatched pairs. 53167 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:18,815,579
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 447351 as yet unmatched pairs. 51523 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:21,452,775
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 446074 as yet unmatched pairs. 50246 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:22,485,830
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 444039 as yet unmatched pairs. 48211 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:27,340,196
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 443417 as yet unmatched pairs. 47589 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:28,735,245
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 440489 as yet unmatched pairs. 44660 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,110
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 438890 as yet unmatched pairs. 43061 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:29,986,955
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 436412 as yet unmatched pairs. 40582 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:30,398,180
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 434036 as yet unmatched pairs. 38203 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:30,947,184
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 431143 as yet unmatched pairs. 35309 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:31,376,997
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 428644 as yet unmatched pairs. 32809 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:52,655,716
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 425754 as yet unmatched pairs. 29916 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:56,470,711
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 423073 as yet unmatched pairs. 27235 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:57,654,095
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 420199 as yet unmatched pairs. 24358 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:66,885,005
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 417252 as yet unmatched pairs. 21410 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr16:67,663,453
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 414056 as yet unmatched pairs. 18213 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 2s. Last read position: chr16:69,245,728
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 411347 as yet unmatched pairs. 15502 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:70,664,198
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 408975 as yet unmatched pairs. 13128 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:74,496,497
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 406434 as yet unmatched pairs. 10585 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:84,453,214
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 402906 as yet unmatched pairs. 7051 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:88,698,976
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 400320 as yet unmatched pairs. 4462 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr16:89,562,390
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 397534 as yet unmatched pairs. 1675 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr17:1,365,003
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 398420 as yet unmatched pairs. 112552 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:1,800,323
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 391213 as yet unmatched pairs. 105344 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:4,542,496
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 388404 as yet unmatched pairs. 102533 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:5,361,310
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 385758 as yet unmatched pairs. 99881 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:7,349,024
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 383121 as yet unmatched pairs. 97244 records in RAM.
INFO 2026-06-08 09:09:50 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:7,579,904
INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 381267 as yet unmatched pairs. 95390 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:8,045,236
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 378726 as yet unmatched pairs. 92848 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr17:8,377,682
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 376401 as yet unmatched pairs. 90523 records in RAM.
INFO 2026-06-08 09:12:09 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 135s. Last read position: chr17:16,061,731
INFO 2026-06-08 09:12:09 MarkDuplicates Tracking 372825 as yet unmatched pairs. 86947 records in RAM.
INFO 2026-06-08 09:12:11 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:17,803,760
INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 370198 as yet unmatched pairs. 84317 records in RAM.
INFO 2026-06-08 09:12:12 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr17:19,577,363
INFO 2026-06-08 09:12:12 MarkDuplicates Tracking 367334 as yet unmatched pairs. 81452 records in RAM.
INFO 2026-06-08 09:12:14 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr17:28,686,746
INFO 2026-06-08 09:12:14 MarkDuplicates Tracking 364928 as yet unmatched pairs. 79041 records in RAM.
INFO 2026-06-08 09:12:16 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:30,442,315
INFO 2026-06-08 09:12:16 MarkDuplicates Tracking 362240 as yet unmatched pairs. 76353 records in RAM.
INFO 2026-06-08 09:12:17 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:35,624,398
INFO 2026-06-08 09:12:17 MarkDuplicates Tracking 360093 as yet unmatched pairs. 74206 records in RAM.
INFO 2026-06-08 09:12:19 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr17:37,710,541
INFO 2026-06-08 09:12:19 MarkDuplicates Tracking 357447 as yet unmatched pairs. 71550 records in RAM.
INFO 2026-06-08 09:12:21 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:39,200,333
INFO 2026-06-08 09:12:21 MarkDuplicates Tracking 355325 as yet unmatched pairs. 69428 records in RAM.
INFO 2026-06-08 09:12:22 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,750
INFO 2026-06-08 09:12:22 MarkDuplicates Tracking 353579 as yet unmatched pairs. 67682 records in RAM.
INFO 2026-06-08 09:12:24 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:41,688,946
INFO 2026-06-08 09:12:24 MarkDuplicates Tracking 349849 as yet unmatched pairs. 63951 records in RAM.
INFO 2026-06-08 09:12:26 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:42,422,969
INFO 2026-06-08 09:12:26 MarkDuplicates Tracking 347455 as yet unmatched pairs. 61555 records in RAM.
INFO 2026-06-08 09:12:27 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr17:43,196,534
INFO 2026-06-08 09:12:27 MarkDuplicates Tracking 344001 as yet unmatched pairs. 58101 records in RAM.
INFO 2026-06-08 09:12:29 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr17:44,864,929
INFO 2026-06-08 09:12:29 MarkDuplicates Tracking 340785 as yet unmatched pairs. 54885 records in RAM.
INFO 2026-06-08 09:12:31 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:46,570,776
INFO 2026-06-08 09:12:31 MarkDuplicates Tracking 338735 as yet unmatched pairs. 52832 records in RAM.
INFO 2026-06-08 09:12:33 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr17:49,311,333
INFO 2026-06-08 09:12:33 MarkDuplicates Tracking 336322 as yet unmatched pairs. 50419 records in RAM.
INFO 2026-06-08 09:12:35 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,095
INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 343270 as yet unmatched pairs. 57366 records in RAM.
INFO 2026-06-08 09:12:37 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,981
INFO 2026-06-08 09:12:37 MarkDuplicates Tracking 339933 as yet unmatched pairs. 54029 records in RAM.
INFO 2026-06-08 09:12:39 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,154
INFO 2026-06-08 09:12:39 MarkDuplicates Tracking 336168 as yet unmatched pairs. 50263 records in RAM.
INFO 2026-06-08 09:12:41 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 2s. Last read position: chr17:50,655,862
INFO 2026-06-08 09:12:41 MarkDuplicates Tracking 325008 as yet unmatched pairs. 39101 records in RAM.
INFO 2026-06-08 09:12:43 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:57,983,338
INFO 2026-06-08 09:12:43 MarkDuplicates Tracking 322160 as yet unmatched pairs. 36252 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,482
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 320786 as yet unmatched pairs. 34878 records in RAM.
INFO 2026-06-08 09:12:46 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:62,690,214
INFO 2026-06-08 09:12:46 MarkDuplicates Tracking 316939 as yet unmatched pairs. 31028 records in RAM.
INFO 2026-06-08 09:12:48 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr17:64,375,149
INFO 2026-06-08 09:12:48 MarkDuplicates Tracking 316190 as yet unmatched pairs. 30276 records in RAM.
INFO 2026-06-08 09:12:49 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr17:67,945,551
INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 311824 as yet unmatched pairs. 25907 records in RAM.
INFO 2026-06-08 09:12:51 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:73,285,484
INFO 2026-06-08 09:12:51 MarkDuplicates Tracking 309861 as yet unmatched pairs. 23944 records in RAM.
INFO 2026-06-08 09:12:52 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:75,573,547
INFO 2026-06-08 09:12:52 MarkDuplicates Tracking 306739 as yet unmatched pairs. 20815 records in RAM.
INFO 2026-06-08 09:12:55 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 2s. Last read position: chr17:76,021,896
INFO 2026-06-08 09:12:55 MarkDuplicates Tracking 303685 as yet unmatched pairs. 17761 records in RAM.
INFO 2026-06-08 09:12:56 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:78,170,855
INFO 2026-06-08 09:12:56 MarkDuplicates Tracking 300923 as yet unmatched pairs. 14999 records in RAM.
INFO 2026-06-08 09:12:58 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:80,119,311
INFO 2026-06-08 09:12:58 MarkDuplicates Tracking 298121 as yet unmatched pairs. 12193 records in RAM.
INFO 2026-06-08 09:12:59 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:81,246,945
INFO 2026-06-08 09:12:59 MarkDuplicates Tracking 295149 as yet unmatched pairs. 9208 records in RAM.
INFO 2026-06-08 09:13:01 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr17:81,868,885
INFO 2026-06-08 09:13:01 MarkDuplicates Tracking 292485 as yet unmatched pairs. 6544 records in RAM.
INFO 2026-06-08 09:13:03 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:82,088,258
INFO 2026-06-08 09:13:03 MarkDuplicates Tracking 289442 as yet unmatched pairs. 3498 records in RAM.
INFO 2026-06-08 09:13:04 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr18:712,332
INFO 2026-06-08 09:13:04 MarkDuplicates Tracking 285907 as yet unmatched pairs. 15246 records in RAM.
INFO 2026-06-08 09:13:06 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr18:10,705,377
INFO 2026-06-08 09:13:06 MarkDuplicates Tracking 282963 as yet unmatched pairs. 12299 records in RAM.
INFO 2026-06-08 09:13:09 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 2s. Last read position: chr18:23,951,691
INFO 2026-06-08 09:13:09 MarkDuplicates Tracking 280446 as yet unmatched pairs. 9781 records in RAM.
INFO 2026-06-08 09:13:11 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr18:45,882,461
INFO 2026-06-08 09:13:11 MarkDuplicates Tracking 277938 as yet unmatched pairs. 7271 records in RAM.
INFO 2026-06-08 09:13:12 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr18:57,607,322
INFO 2026-06-08 09:13:12 MarkDuplicates Tracking 275396 as yet unmatched pairs. 4729 records in RAM.
INFO 2026-06-08 09:13:14 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr18:74,263,371
INFO 2026-06-08 09:13:14 MarkDuplicates Tracking 273764 as yet unmatched pairs. 3090 records in RAM.
INFO 2026-06-08 09:13:17 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 2s. Last read position: chr19:677,794
INFO 2026-06-08 09:13:17 MarkDuplicates Tracking 269974 as yet unmatched pairs. 118606 records in RAM.
INFO 2026-06-08 09:13:18 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:1,106,258
INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 268545 as yet unmatched pairs. 117177 records in RAM.
INFO 2026-06-08 09:13:20 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:1,816,024
INFO 2026-06-08 09:13:20 MarkDuplicates Tracking 263076 as yet unmatched pairs. 111707 records in RAM.
INFO 2026-06-08 09:13:23 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 2s. Last read position: chr19:2,477,287
INFO 2026-06-08 09:13:23 MarkDuplicates Tracking 260201 as yet unmatched pairs. 108830 records in RAM.
INFO 2026-06-08 09:13:24 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:3,984,277
INFO 2026-06-08 09:13:24 MarkDuplicates Tracking 256521 as yet unmatched pairs. 105150 records in RAM.
INFO 2026-06-08 09:13:26 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:5,274,304
INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 253813 as yet unmatched pairs. 102441 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr19:6,680,194
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 252244 as yet unmatched pairs. 100871 records in RAM.
INFO 2026-06-08 09:13:31 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:7,267,682
INFO 2026-06-08 09:13:31 MarkDuplicates Tracking 247957 as yet unmatched pairs. 96584 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:8,402,218
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 245262 as yet unmatched pairs. 93889 records in RAM.
INFO 2026-06-08 09:13:35 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:10,333,354
INFO 2026-06-08 09:13:35 MarkDuplicates Tracking 241454 as yet unmatched pairs. 90081 records in RAM.
INFO 2026-06-08 09:13:36 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:11,019,589
INFO 2026-06-08 09:13:36 MarkDuplicates Tracking 238668 as yet unmatched pairs. 87293 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:11,666,620
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 235710 as yet unmatched pairs. 84335 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:13,025,081
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 233672 as yet unmatched pairs. 82297 records in RAM.
INFO 2026-06-08 09:13:42 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:14,406,403
INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 229954 as yet unmatched pairs. 78579 records in RAM.
INFO 2026-06-08 09:13:43 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:15,238,865
INFO 2026-06-08 09:13:43 MarkDuplicates Tracking 226967 as yet unmatched pairs. 75592 records in RAM.
INFO 2026-06-08 09:13:45 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 2s. Last read position: chr19:16,325,220
INFO 2026-06-08 09:13:45 MarkDuplicates Tracking 224787 as yet unmatched pairs. 73410 records in RAM.
INFO 2026-06-08 09:13:47 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:17,517,372
INFO 2026-06-08 09:13:47 MarkDuplicates Tracking 221218 as yet unmatched pairs. 69839 records in RAM.
INFO 2026-06-08 09:13:49 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:18,435,045
INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 217542 as yet unmatched pairs. 66158 records in RAM.
INFO 2026-06-08 09:13:50 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:19,297,296
INFO 2026-06-08 09:13:50 MarkDuplicates Tracking 214472 as yet unmatched pairs. 63088 records in RAM.
INFO 2026-06-08 09:13:53 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 2s. Last read position: chr19:34,366,779
INFO 2026-06-08 09:13:53 MarkDuplicates Tracking 212063 as yet unmatched pairs. 60676 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:35,721,059
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 208170 as yet unmatched pairs. 56780 records in RAM.
INFO 2026-06-08 09:13:57 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr19:38,256,225
INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 205151 as yet unmatched pairs. 53759 records in RAM.
INFO 2026-06-08 09:13:58 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:39,380,671
INFO 2026-06-08 09:13:58 MarkDuplicates Tracking 202585 as yet unmatched pairs. 51193 records in RAM.
INFO 2026-06-08 09:14:00 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:39,886,080
INFO 2026-06-08 09:14:00 MarkDuplicates Tracking 199618 as yet unmatched pairs. 48223 records in RAM.
INFO 2026-06-08 09:14:02 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:40,590,979
INFO 2026-06-08 09:14:02 MarkDuplicates Tracking 196985 as yet unmatched pairs. 45590 records in RAM.
INFO 2026-06-08 09:14:03 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:40,924,398
INFO 2026-06-08 09:14:03 MarkDuplicates Tracking 196910 as yet unmatched pairs. 45514 records in RAM.
INFO 2026-06-08 09:14:05 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:41,761,256
INFO 2026-06-08 09:14:05 MarkDuplicates Tracking 192786 as yet unmatched pairs. 41389 records in RAM.
INFO 2026-06-08 09:14:07 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:42,274,012
INFO 2026-06-08 09:14:07 MarkDuplicates Tracking 188326 as yet unmatched pairs. 36928 records in RAM.
INFO 2026-06-08 09:14:09 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 2s. Last read position: chr19:43,964,954
INFO 2026-06-08 09:14:09 MarkDuplicates Tracking 185120 as yet unmatched pairs. 33720 records in RAM.
INFO 2026-06-08 09:14:10 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:45,470,506
INFO 2026-06-08 09:14:10 MarkDuplicates Tracking 183210 as yet unmatched pairs. 31808 records in RAM.
INFO 2026-06-08 09:14:12 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:46,704,363
INFO 2026-06-08 09:14:12 MarkDuplicates Tracking 178912 as yet unmatched pairs. 27509 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:47,756,702
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 175785 as yet unmatched pairs. 24382 records in RAM.
INFO 2026-06-08 09:14:16 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:48,965,506
INFO 2026-06-08 09:14:16 MarkDuplicates Tracking 173755 as yet unmatched pairs. 22351 records in RAM.
INFO 2026-06-08 09:14:17 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:49,525,523
INFO 2026-06-08 09:14:17 MarkDuplicates Tracking 171754 as yet unmatched pairs. 20349 records in RAM.
INFO 2026-06-08 09:14:19 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:49,909,458
INFO 2026-06-08 09:14:19 MarkDuplicates Tracking 167199 as yet unmatched pairs. 15794 records in RAM.
INFO 2026-06-08 09:14:20 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:50,378,592
INFO 2026-06-08 09:14:20 MarkDuplicates Tracking 164567 as yet unmatched pairs. 13162 records in RAM.
INFO 2026-06-08 09:14:22 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:54,121,930
INFO 2026-06-08 09:14:22 MarkDuplicates Tracking 161543 as yet unmatched pairs. 10138 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:55,095,296
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 158834 as yet unmatched pairs. 7429 records in RAM.
INFO 2026-06-08 09:14:25 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:55,691,943
INFO 2026-06-08 09:14:25 MarkDuplicates Tracking 156322 as yet unmatched pairs. 4917 records in RAM.
INFO 2026-06-08 09:14:27 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:58,387,288
INFO 2026-06-08 09:14:27 MarkDuplicates Tracking 153441 as yet unmatched pairs. 2036 records in RAM.
INFO 2026-06-08 09:14:29 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 2s. Last read position: chr20:2,663,492
INFO 2026-06-08 09:14:29 MarkDuplicates Tracking 150470 as yet unmatched pairs. 34683 records in RAM.
INFO 2026-06-08 09:14:31 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr20:6,084,040
INFO 2026-06-08 09:14:31 MarkDuplicates Tracking 146889 as yet unmatched pairs. 31097 records in RAM.
INFO 2026-06-08 09:14:33 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:18,760,247
INFO 2026-06-08 09:14:33 MarkDuplicates Tracking 144511 as yet unmatched pairs. 28716 records in RAM.
INFO 2026-06-08 09:14:34 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr20:25,512,889
INFO 2026-06-08 09:14:34 MarkDuplicates Tracking 141803 as yet unmatched pairs. 26008 records in RAM.
INFO 2026-06-08 09:14:37 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr20:34,741,991
INFO 2026-06-08 09:14:37 MarkDuplicates Tracking 139147 as yet unmatched pairs. 23352 records in RAM.
INFO 2026-06-08 09:14:39 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr20:36,541,515
INFO 2026-06-08 09:14:39 MarkDuplicates Tracking 136321 as yet unmatched pairs. 20526 records in RAM.
INFO 2026-06-08 09:14:41 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr20:41,100,099
INFO 2026-06-08 09:14:41 MarkDuplicates Tracking 133575 as yet unmatched pairs. 17780 records in RAM.
INFO 2026-06-08 09:14:42 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr20:45,327,348
INFO 2026-06-08 09:14:42 MarkDuplicates Tracking 136252 as yet unmatched pairs. 20457 records in RAM.
INFO 2026-06-08 09:14:44 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr20:47,236,367
INFO 2026-06-08 09:14:44 MarkDuplicates Tracking 128457 as yet unmatched pairs. 12662 records in RAM.
INFO 2026-06-08 09:14:46 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr20:51,523,483
INFO 2026-06-08 09:14:46 MarkDuplicates Tracking 125486 as yet unmatched pairs. 9691 records in RAM.
INFO 2026-06-08 09:14:47 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr20:59,035,071
INFO 2026-06-08 09:14:47 MarkDuplicates Tracking 122283 as yet unmatched pairs. 6487 records in RAM.
INFO 2026-06-08 09:14:50 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr20:62,881,971
INFO 2026-06-08 09:14:50 MarkDuplicates Tracking 119288 as yet unmatched pairs. 3491 records in RAM.
INFO 2026-06-08 09:14:51 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr20:64,048,697
INFO 2026-06-08 09:14:51 MarkDuplicates Tracking 116098 as yet unmatched pairs. 300 records in RAM.
INFO 2026-06-08 09:14:53 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr21:8,259,021
INFO 2026-06-08 09:14:53 MarkDuplicates Tracking 114352 as yet unmatched pairs. 17100 records in RAM.
INFO 2026-06-08 09:14:54 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr21:15,805,126
INFO 2026-06-08 09:14:54 MarkDuplicates Tracking 112508 as yet unmatched pairs. 15255 records in RAM.
INFO 2026-06-08 09:14:56 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr21:33,266,401
INFO 2026-06-08 09:14:56 MarkDuplicates Tracking 109918 as yet unmatched pairs. 12665 records in RAM.
INFO 2026-06-08 09:14:59 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr21:37,227,750
INFO 2026-06-08 09:14:59 MarkDuplicates Tracking 107163 as yet unmatched pairs. 9910 records in RAM.
INFO 2026-06-08 09:15:01 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr21:42,534,712
INFO 2026-06-08 09:15:01 MarkDuplicates Tracking 104713 as yet unmatched pairs. 7460 records in RAM.
INFO 2026-06-08 09:15:02 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr21:44,906,973
INFO 2026-06-08 09:15:02 MarkDuplicates Tracking 102186 as yet unmatched pairs. 4933 records in RAM.
INFO 2026-06-08 09:15:04 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr21:46,125,869
INFO 2026-06-08 09:15:04 MarkDuplicates Tracking 99181 as yet unmatched pairs. 1927 records in RAM.
INFO 2026-06-08 09:15:06 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 2s. Last read position: chr22:18,913,495
INFO 2026-06-08 09:15:06 MarkDuplicates Tracking 97053 as yet unmatched pairs. 50721 records in RAM.
INFO 2026-06-08 09:15:08 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr22:20,314,569
INFO 2026-06-08 09:15:08 MarkDuplicates Tracking 93060 as yet unmatched pairs. 46728 records in RAM.
INFO 2026-06-08 09:15:10 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 2s. Last read position: chr22:23,181,088
INFO 2026-06-08 09:15:10 MarkDuplicates Tracking 91005 as yet unmatched pairs. 44673 records in RAM.
INFO 2026-06-08 09:15:12 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr22:24,119,423
INFO 2026-06-08 09:15:12 MarkDuplicates Tracking 87182 as yet unmatched pairs. 40850 records in RAM.
INFO 2026-06-08 09:15:14 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr22:25,039,317
INFO 2026-06-08 09:15:14 MarkDuplicates Tracking 84206 as yet unmatched pairs. 37874 records in RAM.
INFO 2026-06-08 09:15:15 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr22:29,288,650
INFO 2026-06-08 09:15:15 MarkDuplicates Tracking 82557 as yet unmatched pairs. 36225 records in RAM.
INFO 2026-06-08 09:15:17 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr22:30,491,951
INFO 2026-06-08 09:15:17 MarkDuplicates Tracking 78495 as yet unmatched pairs. 32163 records in RAM.
INFO 2026-06-08 09:15:19 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr22:33,337,714
INFO 2026-06-08 09:15:19 MarkDuplicates Tracking 75730 as yet unmatched pairs. 29397 records in RAM.
INFO 2026-06-08 09:15:21 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr22:36,306,550
INFO 2026-06-08 09:15:21 MarkDuplicates Tracking 74228 as yet unmatched pairs. 27895 records in RAM.
INFO 2026-06-08 09:15:23 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 2s. Last read position: chr22:37,768,102
INFO 2026-06-08 09:15:23 MarkDuplicates Tracking 70010 as yet unmatched pairs. 23677 records in RAM.
INFO 2026-06-08 09:15:25 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr22:38,738,744
INFO 2026-06-08 09:15:25 MarkDuplicates Tracking 67976 as yet unmatched pairs. 21643 records in RAM.
INFO 2026-06-08 09:15:27 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr22:40,424,212
INFO 2026-06-08 09:15:27 MarkDuplicates Tracking 64600 as yet unmatched pairs. 18267 records in RAM.
INFO 2026-06-08 09:15:28 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr22:41,589,639
INFO 2026-06-08 09:15:28 MarkDuplicates Tracking 61907 as yet unmatched pairs. 15574 records in RAM.
INFO 2026-06-08 09:15:30 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr22:42,876,934
INFO 2026-06-08 09:15:30 MarkDuplicates Tracking 60046 as yet unmatched pairs. 13713 records in RAM.
INFO 2026-06-08 09:15:32 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr22:46,439,364
INFO 2026-06-08 09:15:32 MarkDuplicates Tracking 56667 as yet unmatched pairs. 10334 records in RAM.
INFO 2026-06-08 09:15:33 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr22:50,244,048
INFO 2026-06-08 09:15:33 MarkDuplicates Tracking 52738 as yet unmatched pairs. 6405 records in RAM.
INFO 2026-06-08 09:15:35 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 2s. Last read position: chr22:50,517,975
INFO 2026-06-08 09:15:35 MarkDuplicates Tracking 49322 as yet unmatched pairs. 2989 records in RAM.
INFO 2026-06-08 09:15:37 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 2s. Last read position: chrX:2,489,889
INFO 2026-06-08 09:15:37 MarkDuplicates Tracking 45654 as yet unmatched pairs. 40649 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chrX:13,753,415
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 42917 as yet unmatched pairs. 37912 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 2s. Last read position: chrX:24,539,139
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 40533 as yet unmatched pairs. 35523 records in RAM.
INFO 2026-06-08 09:15:43 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chrX:41,531,085
INFO 2026-06-08 09:15:43 MarkDuplicates Tracking 38048 as yet unmatched pairs. 33038 records in RAM.
INFO 2026-06-08 09:15:44 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chrX:47,584,942
INFO 2026-06-08 09:15:44 MarkDuplicates Tracking 36523 as yet unmatched pairs. 31513 records in RAM.
INFO 2026-06-08 09:15:46 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chrX:49,115,902
INFO 2026-06-08 09:15:46 MarkDuplicates Tracking 32725 as yet unmatched pairs. 27715 records in RAM.
INFO 2026-06-08 09:15:48 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:53,551,338
INFO 2026-06-08 09:15:48 MarkDuplicates Tracking 30519 as yet unmatched pairs. 25509 records in RAM.
INFO 2026-06-08 09:15:49 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chrX:65,739,178
INFO 2026-06-08 09:15:49 MarkDuplicates Tracking 28758 as yet unmatched pairs. 23748 records in RAM.
INFO 2026-06-08 09:15:51 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chrX:71,559,325
INFO 2026-06-08 09:15:51 MarkDuplicates Tracking 25849 as yet unmatched pairs. 20839 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chrX:78,114,088
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 23056 as yet unmatched pairs. 18046 records in RAM.
INFO 2026-06-08 09:15:54 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chrX:107,714,556
INFO 2026-06-08 09:15:54 MarkDuplicates Tracking 24010 as yet unmatched pairs. 19000 records in RAM.
INFO 2026-06-08 09:15:57 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 2s. Last read position: chrX:119,582,619
INFO 2026-06-08 09:15:57 MarkDuplicates Tracking 18284 as yet unmatched pairs. 13272 records in RAM.
INFO 2026-06-08 09:15:59 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 2s. Last read position: chrX:135,521,052
INFO 2026-06-08 09:15:59 MarkDuplicates Tracking 15591 as yet unmatched pairs. 10579 records in RAM.
INFO 2026-06-08 09:16:01 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chrX:153,588,370
INFO 2026-06-08 09:16:01 MarkDuplicates Tracking 13248 as yet unmatched pairs. 8236 records in RAM.
INFO 2026-06-08 09:16:02 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chrX:154,353,009
INFO 2026-06-08 09:16:02 MarkDuplicates Tracking 11721 as yet unmatched pairs. 6709 records in RAM.
INFO 2026-06-08 09:16:04 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:154,367,678
INFO 2026-06-08 09:16:04 MarkDuplicates Tracking 9739 as yet unmatched pairs. 4727 records in RAM.
INFO 2026-06-08 09:16:06 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chrY:8,528,617
INFO 2026-06-08 09:16:06 MarkDuplicates Tracking 5007 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 09:16:07 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: KI270711.1:18,226
INFO 2026-06-08 09:16:07 MarkDuplicates Tracking 2555 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: KI270734.1:161,382
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 328 as yet unmatched pairs. 322 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 626019695 records. 0 pairs never matched.
INFO 2026-06-08 09:16:59 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141008; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:16:59 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:17:05 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:17:05 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:17:17 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:17:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,351
INFO 2026-06-08 09:17:27 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 09:17:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,183
INFO 2026-06-08 09:17:33 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:17:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,727
INFO 2026-06-08 09:17:33 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 09:17:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,257
INFO 2026-06-08 09:17:33 OpticalDuplicateFinder Large duplicate set. size = 1269
INFO 2026-06-08 09:17:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,362
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1703
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,725
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1338
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,250
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1319
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,409
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 3918
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,638
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,823
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,187
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1536
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,245
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1903
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,930
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,253
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 2406
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,468
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,725
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1678
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,290
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,157
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1705
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,846
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,321
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,245
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1428
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,753
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1293
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,611
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1195
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,215
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,935
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1220
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,708
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1594
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,155
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1199
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,115
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder Large duplicate set. size = 1379
INFO 2026-06-08 09:17:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,952
INFO 2026-06-08 09:17:36 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 09:17:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,283
INFO 2026-06-08 09:17:36 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 09:17:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,854
INFO 2026-06-08 09:17:36 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:17:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,001
INFO 2026-06-08 09:17:46 OpticalDuplicateFinder Large duplicate set. size = 1222
INFO 2026-06-08 09:17:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,024
INFO 2026-06-08 09:18:53 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:18:53 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:20:20 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:20:26 MarkDuplicates After generateDuplicateIndexes freeMemory: 203954840; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:20:26 MarkDuplicates Marking 364616055 records as duplicates.
INFO 2026-06-08 09:20:26 MarkDuplicates Found 12404543 optical duplicate clusters.
INFO 2026-06-08 09:20:26 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:20:44 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:22,639,103
INFO 2026-06-08 09:21:02 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:35s. Time for last 10,000,000: 17s. Last read position: chr1:43,703,726
INFO 2026-06-08 09:21:19 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:53s. Time for last 10,000,000: 17s. Last read position: chr1:116,390,168
INFO 2026-06-08 09:21:37 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:10s. Time for last 10,000,000: 17s. Last read position: chr1:153,958,362
INFO 2026-06-08 09:21:54 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:28s. Time for last 10,000,000: 17s. Last read position: chr1:171,557,834
INFO 2026-06-08 09:22:12 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:45s. Time for last 10,000,000: 17s. Last read position: chr1:223,619,549
INFO 2026-06-08 09:22:29 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:03s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,254
INFO 2026-06-08 09:22:46 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:20s. Time for last 10,000,000: 16s. Last read position: chr2:63,599,201
INFO 2026-06-08 09:23:03 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:37s. Time for last 10,000,000: 17s. Last read position: chr2:110,567,448
INFO 2026-06-08 09:23:21 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:55s. Time for last 10,000,000: 17s. Last read position: chr2:203,190,339
INFO 2026-06-08 09:23:38 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:12s. Time for last 10,000,000: 17s. Last read position: chr2:218,387,808
INFO 2026-06-08 09:23:56 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:29s. Time for last 10,000,000: 17s. Last read position: chr3:38,122,331
INFO 2026-06-08 09:24:14 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:47s. Time for last 10,000,000: 18s. Last read position: chr3:72,997,061
INFO 2026-06-08 09:24:32 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:05s. Time for last 10,000,000: 17s. Last read position: chr3:172,506,495
INFO 2026-06-08 09:24:50 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 17s. Last read position: chr4:25,674,333
INFO 2026-06-08 09:25:08 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:41s. Time for last 10,000,000: 17s. Last read position: chr4:112,432,454
INFO 2026-06-08 09:25:25 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:59s. Time for last 10,000,000: 17s. Last read position: chr5:38,511,810
INFO 2026-06-08 09:25:43 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:17s. Time for last 10,000,000: 17s. Last read position: chr5:138,325,829
INFO 2026-06-08 09:26:01 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:34s. Time for last 10,000,000: 17s. Last read position: chr5:150,406,267
INFO 2026-06-08 09:26:19 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:52s. Time for last 10,000,000: 17s. Last read position: chr5:180,590,113
INFO 2026-06-08 09:26:36 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:10s. Time for last 10,000,000: 17s. Last read position: chr6:31,816,972
INFO 2026-06-08 09:26:54 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:28s. Time for last 10,000,000: 17s. Last read position: chr6:41,742,383
INFO 2026-06-08 09:27:12 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:45s. Time for last 10,000,000: 17s. Last read position: chr6:133,889,460
INFO 2026-06-08 09:27:30 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:03s. Time for last 10,000,000: 17s. Last read position: chr7:7,673,388
INFO 2026-06-08 09:27:47 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:21s. Time for last 10,000,000: 17s. Last read position: chr7:77,173,304
INFO 2026-06-08 09:28:05 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:39s. Time for last 10,000,000: 17s. Last read position: chr7:134,950,491
INFO 2026-06-08 09:28:23 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:57s. Time for last 10,000,000: 17s. Last read position: chr8:22,164,374
INFO 2026-06-08 09:28:41 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:14s. Time for last 10,000,000: 17s. Last read position: chr8:100,261,573
INFO 2026-06-08 09:28:58 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:32s. Time for last 10,000,000: 17s. Last read position: chr9:14,120,416
INFO 2026-06-08 09:29:16 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:49s. Time for last 10,000,000: 17s. Last read position: chr9:113,584,181
INFO 2026-06-08 09:29:33 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:07s. Time for last 10,000,000: 17s. Last read position: chr9:136,943,432
INFO 2026-06-08 09:29:51 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:25s. Time for last 10,000,000: 17s. Last read position: chr10:72,275,017
INFO 2026-06-08 09:30:09 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:42s. Time for last 10,000,000: 17s. Last read position: chr10:122,211,127
INFO 2026-06-08 09:30:26 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:00s. Time for last 10,000,000: 17s. Last read position: chr11:43,448,096
INFO 2026-06-08 09:30:44 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:18s. Time for last 10,000,000: 17s. Last read position: chr11:65,546,444
INFO 2026-06-08 09:31:02 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:35s. Time for last 10,000,000: 17s. Last read position: chr11:114,059,727
INFO 2026-06-08 09:31:20 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:53s. Time for last 10,000,000: 17s. Last read position: chr12:7,065,142
INFO 2026-06-08 09:31:38 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:12s. Time for last 10,000,000: 18s. Last read position: chr12:52,904,656
INFO 2026-06-08 09:31:56 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:30s. Time for last 10,000,000: 17s. Last read position: chr12:91,108,551
INFO 2026-06-08 09:32:14 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:47s. Time for last 10,000,000: 17s. Last read position: chr13:24,478,261
INFO 2026-06-08 09:32:32 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:05s. Time for last 10,000,000: 17s. Last read position: chr14:21,391,849
INFO 2026-06-08 09:32:50 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:23s. Time for last 10,000,000: 17s. Last read position: chr14:74,812,715
INFO 2026-06-08 09:33:07 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 17s. Last read position: chr15:29,733,111
INFO 2026-06-08 09:33:25 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:59s. Time for last 10,000,000: 17s. Last read position: chr15:66,500,086
INFO 2026-06-08 09:33:43 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:17s. Time for last 10,000,000: 17s. Last read position: chr16:55,064
INFO 2026-06-08 09:34:01 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:34s. Time for last 10,000,000: 17s. Last read position: chr16:14,918,829
INFO 2026-06-08 09:34:18 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:52s. Time for last 10,000,000: 17s. Last read position: chr16:29,986,955
INFO 2026-06-08 09:34:36 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:09s. Time for last 10,000,000: 17s. Last read position: chr16:70,664,198
INFO 2026-06-08 09:34:54 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:27s. Time for last 10,000,000: 17s. Last read position: chr17:7,579,904
INFO 2026-06-08 09:35:11 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:44s. Time for last 10,000,000: 17s. Last read position: chr17:39,200,333
INFO 2026-06-08 09:35:29 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:02s. Time for last 10,000,000: 17s. Last read position: chr17:50,196,154
INFO 2026-06-08 09:35:46 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:20s. Time for last 10,000,000: 17s. Last read position: chr17:78,170,855
INFO 2026-06-08 09:36:04 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:38s. Time for last 10,000,000: 17s. Last read position: chr18:74,263,371
INFO 2026-06-08 09:36:22 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:55s. Time for last 10,000,000: 17s. Last read position: chr19:10,333,354
INFO 2026-06-08 09:36:40 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:13s. Time for last 10,000,000: 17s. Last read position: chr19:34,366,779
INFO 2026-06-08 09:36:57 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:31s. Time for last 10,000,000: 17s. Last read position: chr19:45,470,506
INFO 2026-06-08 09:37:15 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:48s. Time for last 10,000,000: 17s. Last read position: chr19:58,387,288
INFO 2026-06-08 09:37:32 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:06s. Time for last 10,000,000: 17s. Last read position: chr20:51,523,483
INFO 2026-06-08 09:37:50 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:23s. Time for last 10,000,000: 17s. Last read position: chr21:46,125,869
INFO 2026-06-08 09:38:08 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:42s. Time for last 10,000,000: 18s. Last read position: chr22:37,768,102
INFO 2026-06-08 09:38:26 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:59s. Time for last 10,000,000: 17s. Last read position: chrX:24,539,139
INFO 2026-06-08 09:38:45 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:18s. Time for last 10,000,000: 18s. Last read position: chrX:135,521,052
INFO 2026-06-08 09:39:05 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:39:05 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:39:05 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:39:05 MarkDuplicates Before output close freeMemory: 203276456; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:39:05 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:39:05 MarkDuplicates After output close freeMemory: 104163888; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:39:05 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 44.50 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory