Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_bQZ-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_bQZ-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:04:36.529 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:04:36 GMT 2026] MarkDuplicates --INPUT 659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_bQZ-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_bQZ-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:04:36 GMT 2026] Executing as ?@nf-74679079a75c6cc4284309f39b34a960-51ebd-628d6 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:04:36 MarkDuplicates Start of doWork freeMemory: 105827992; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:04:36 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:04:36 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,327,574
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 3678 as yet unmatched pairs. 271 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,790,514
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 8220 as yet unmatched pairs. 1538 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,419,306
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 10485 as yet unmatched pairs. 312 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 3s. Last read position: chr1:9,598,537
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 13560 as yet unmatched pairs. 217 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:11,923,157
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 17557 as yet unmatched pairs. 1401 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:15,932,178
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 19411 as yet unmatched pairs. 349 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:17,625,936
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 22853 as yet unmatched pairs. 634 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:19,975,598
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 25373 as yet unmatched pairs. 107 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:21,834,679
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 29359 as yet unmatched pairs. 1178 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:22,639,477
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 31382 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:24,669,381
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 34291 as yet unmatched pairs. 347 records in RAM.
INFO 2026-06-08 09:05:03 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:26,863,760
INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 37482 as yet unmatched pairs. 856 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:29,053,181
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 40048 as yet unmatched pairs. 510 records in RAM.
INFO 2026-06-08 09:05:07 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:31,919,484
INFO 2026-06-08 09:05:07 MarkDuplicates Tracking 43481 as yet unmatched pairs. 926 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:32,964,008
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 46851 as yet unmatched pairs. 1167 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:36,296,600
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 49590 as yet unmatched pairs. 891 records in RAM.
INFO 2026-06-08 09:05:12 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:39,435,708
INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 51968 as yet unmatched pairs. 412 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:42,700,813
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 55095 as yet unmatched pairs. 942 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:43,979,432
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 58365 as yet unmatched pairs. 1002 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:46,032,663
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 60412 as yet unmatched pairs. 415 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:51,878,601
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 62977 as yet unmatched pairs. 44 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:56,496,650
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 66141 as yet unmatched pairs. 245 records in RAM.
INFO 2026-06-08 09:05:22 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:75,762,708
INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 68702 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:89,583,825
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 71442 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:102,889,483
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 74268 as yet unmatched pairs. 671 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 3s. Last read position: chr1:111,459,554
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 77694 as yet unmatched pairs. 1264 records in RAM.
INFO 2026-06-08 09:05:31 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:114,736,819
INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 80744 as yet unmatched pairs. 1507 records in RAM.
INFO 2026-06-08 09:05:33 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:119,799,725
INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 87261 as yet unmatched pairs. 5414 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:120,005,581
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 85832 as yet unmatched pairs. 1419 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:146,156,501
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 87778 as yet unmatched pairs. 1852 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:149,077,321
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 87676 as yet unmatched pairs. 382 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,805
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 90811 as yet unmatched pairs. 1465 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:150,579,187
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 95790 as yet unmatched pairs. 3972 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:151,983,192
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 95932 as yet unmatched pairs. 1366 records in RAM.
INFO 2026-06-08 09:05:45 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:153,991,161
INFO 2026-06-08 09:05:45 MarkDuplicates Tracking 99078 as yet unmatched pairs. 1929 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:154,601,700
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 101088 as yet unmatched pairs. 1277 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:155,189,997
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 103119 as yet unmatched pairs. 489 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:155,868,350
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 105029 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,304
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 110265 as yet unmatched pairs. 1817 records in RAM.
INFO 2026-06-08 09:05:55 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:156,729,084
INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 111830 as yet unmatched pairs. 146 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:160,880,655
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 114760 as yet unmatched pairs. 571 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:161,998,194
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 116934 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 09:06:00 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:169,131,439
INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 124945 as yet unmatched pairs. 5157 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:179,131,385
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 122669 as yet unmatched pairs. 265 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:183,512,837
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 125823 as yet unmatched pairs. 357 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:193,097,715
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 127962 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 3s. Last read position: chr1:201,996,165
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 131002 as yet unmatched pairs. 452 records in RAM.
INFO 2026-06-08 09:06:10 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:204,125,954
INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 133502 as yet unmatched pairs. 342 records in RAM.
INFO 2026-06-08 09:06:12 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:206,934,443
INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 138597 as yet unmatched pairs. 2819 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:209,792,281
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 139239 as yet unmatched pairs. 508 records in RAM.
INFO 2026-06-08 09:06:15 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:222,654,728
INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 142221 as yet unmatched pairs. 782 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:226,383,047
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 144226 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:230,843,851
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 148343 as yet unmatched pairs. 909 records in RAM.
INFO 2026-06-08 09:06:20 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:236,064,879
INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 151362 as yet unmatched pairs. 412 records in RAM.
INFO 2026-06-08 09:06:22 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:247,451,125
INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 153716 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 09:06:25 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr2:10,441,679
INFO 2026-06-08 09:06:25 MarkDuplicates Tracking 157506 as yet unmatched pairs. 157006 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:20,260,445
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 159869 as yet unmatched pairs. 159351 records in RAM.
INFO 2026-06-08 09:06:28 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:27,082,130
INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 163679 as yet unmatched pairs. 163158 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr2:28,412,344
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 166463 as yet unmatched pairs. 165925 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,255
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 239250 as yet unmatched pairs. 163004 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 505229 as yet unmatched pairs. 152802 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 1202001 as yet unmatched pairs. 125695 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 1512035 as yet unmatched pairs. 113341 records in RAM.
INFO 2026-06-08 09:06:40 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:06:40 MarkDuplicates Tracking 1516496 as yet unmatched pairs. 113210 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:36,966,424
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 1606054 as yet unmatched pairs. 108946 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,650
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 1604553 as yet unmatched pairs. 107428 records in RAM.
INFO 2026-06-08 09:06:45 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:47,373,877
INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 1603019 as yet unmatched pairs. 105889 records in RAM.
INFO 2026-06-08 09:06:47 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr2:54,649,693
INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 1599629 as yet unmatched pairs. 102497 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:61,803,347
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 1594440 as yet unmatched pairs. 97308 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:69,893,995
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 1592585 as yet unmatched pairs. 95431 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:74,135,586
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 1589538 as yet unmatched pairs. 92361 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:84,423,761
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 1586170 as yet unmatched pairs. 88975 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:86,987,275
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 1583451 as yet unmatched pairs. 86242 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:96,275,072
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 1583386 as yet unmatched pairs. 86155 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:99,382,842
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 1579207 as yet unmatched pairs. 81969 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:108,305,093
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 1576588 as yet unmatched pairs. 79338 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,755
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 1576720 as yet unmatched pairs. 79469 records in RAM.
INFO 2026-06-08 09:07:04 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:110,533,796
INFO 2026-06-08 09:07:04 MarkDuplicates Tracking 1572492 as yet unmatched pairs. 75230 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:113,201,212
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 1571309 as yet unmatched pairs. 74046 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:127,635,749
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 1568839 as yet unmatched pairs. 71572 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:136,114,880
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 1567524 as yet unmatched pairs. 70232 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:159,433,216
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 1562952 as yet unmatched pairs. 65649 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:171,692,792
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 1560473 as yet unmatched pairs. 63155 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:178,621,333
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 1557695 as yet unmatched pairs. 60353 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:188,990,317
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 1557475 as yet unmatched pairs. 60124 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:189,002,995
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 1562810 as yet unmatched pairs. 65450 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 4s. Last read position: chr2:189,064,023
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 1549491 as yet unmatched pairs. 52129 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:197,470,137
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 1546357 as yet unmatched pairs. 48983 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:203,126,592
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 1543669 as yet unmatched pairs. 46294 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,514
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 1558886 as yet unmatched pairs. 61498 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:215,370,390
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 1569080 as yet unmatched pairs. 71692 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,359
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 1548319 as yet unmatched pairs. 50928 records in RAM.
INFO 2026-06-08 09:07:33 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,212
INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 1549336 as yet unmatched pairs. 51943 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:215,393,178
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 1542440 as yet unmatched pairs. 45033 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,416
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 1542821 as yet unmatched pairs. 45414 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,414,841
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 1535411 as yet unmatched pairs. 38003 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,181
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 1538657 as yet unmatched pairs. 41246 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr2:215,435,737
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 1533481 as yet unmatched pairs. 36070 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:218,394,933
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 1517896 as yet unmatched pairs. 20461 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr2:219,451,177
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 1514776 as yet unmatched pairs. 17338 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:227,617,496
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 1510894 as yet unmatched pairs. 13448 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:231,710,171
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 1510103 as yet unmatched pairs. 12647 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:237,340,671
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 1506859 as yet unmatched pairs. 9394 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:237,877,223
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 1502835 as yet unmatched pairs. 5358 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:241,249,948
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 1500311 as yet unmatched pairs. 2821 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 2s. Last read position: chr3:9,434,700
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 1496158 as yet unmatched pairs. 78358 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:12,604,259
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 1494699 as yet unmatched pairs. 76892 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:17,288,277
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 1490526 as yet unmatched pairs. 72704 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:36,856,605
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 1487536 as yet unmatched pairs. 69705 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:39,412,285
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 1484904 as yet unmatched pairs. 67065 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 3s. Last read position: chr3:44,959,339
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 1482996 as yet unmatched pairs. 65155 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:47,406,351
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 1479925 as yet unmatched pairs. 62083 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:48,466,848
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 1476833 as yet unmatched pairs. 58978 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:49,006,703
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 1473273 as yet unmatched pairs. 55415 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:49,360,354
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 1472516 as yet unmatched pairs. 54653 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:50,257,552
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 1468138 as yet unmatched pairs. 50274 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:52,208,165
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 1464347 as yet unmatched pairs. 46483 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:52,703,480
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 1461183 as yet unmatched pairs. 43319 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:58,121,406
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 1460571 as yet unmatched pairs. 42691 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 3s. Last read position: chr3:70,977,966
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 1456036 as yet unmatched pairs. 38149 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:101,681,140
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 1459740 as yet unmatched pairs. 41850 records in RAM.
INFO 2026-06-08 09:08:29 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:119,415,398
INFO 2026-06-08 09:08:29 MarkDuplicates Tracking 1450710 as yet unmatched pairs. 32812 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:123,914,890
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 1448510 as yet unmatched pairs. 30603 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:127,714,215
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 1445529 as yet unmatched pairs. 27613 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:129,561,892
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 1442736 as yet unmatched pairs. 24818 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:139,347,020
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 1439581 as yet unmatched pairs. 21659 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:150,581,656
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 1436754 as yet unmatched pairs. 18825 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:170,136,528
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 1433939 as yet unmatched pairs. 15999 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:184,140,561
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 1431680 as yet unmatched pairs. 13737 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:184,832,715
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 1428694 as yet unmatched pairs. 10748 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:193,667,205
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 1426322 as yet unmatched pairs. 8374 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr3:195,780,116
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 1429010 as yet unmatched pairs. 11060 records in RAM.
INFO 2026-06-08 09:08:48 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr3:195,783,666
INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 1428072 as yet unmatched pairs. 10120 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:195,787,703
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 1422662 as yet unmatched pairs. 4709 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:197,954,048
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 1419965 as yet unmatched pairs. 2003 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr4:1,727,835
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 1417233 as yet unmatched pairs. 40721 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr4:2,932,600
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 1412610 as yet unmatched pairs. 36085 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 2s. Last read position: chr4:8,127,561
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 1408424 as yet unmatched pairs. 31878 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr4:25,312,845
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 1405651 as yet unmatched pairs. 29095 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr4:40,816,175
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 1402643 as yet unmatched pairs. 26070 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:56,483,148
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 1400233 as yet unmatched pairs. 23646 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:73,742,006
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 1400465 as yet unmatched pairs. 23876 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:77,048,627
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 1395743 as yet unmatched pairs. 19143 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:87,422,879
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 1391433 as yet unmatched pairs. 14829 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:105,236,269
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 1389270 as yet unmatched pairs. 12652 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr4:121,681,715
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 1388183 as yet unmatched pairs. 11554 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:143,549,996
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 1384133 as yet unmatched pairs. 7492 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:153,295,957
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 1381832 as yet unmatched pairs. 5179 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:176,322,175
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 1379392 as yet unmatched pairs. 2732 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr5:840,445
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 1376339 as yet unmatched pairs. 69616 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:14,291,079
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 1375998 as yet unmatched pairs. 69251 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:17,354,029
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 1370120 as yet unmatched pairs. 63370 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:40,775,486
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 1368056 as yet unmatched pairs. 61277 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:59,768,396
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 1365359 as yet unmatched pairs. 58560 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:72,200,114
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 1363094 as yet unmatched pairs. 56281 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 3s. Last read position: chr5:79,316,077
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 1360290 as yet unmatched pairs. 53472 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr5:93,588,240
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 1358061 as yet unmatched pairs. 51238 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:112,887,156
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 1355964 as yet unmatched pairs. 49118 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:128,158,114
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 1354398 as yet unmatched pairs. 47546 records in RAM.
INFO 2026-06-08 09:09:39 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:134,672,023
INFO 2026-06-08 09:09:39 MarkDuplicates Tracking 1349780 as yet unmatched pairs. 42898 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,540
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 1348901 as yet unmatched pairs. 42017 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:140,512,855
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 1344543 as yet unmatched pairs. 37656 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:141,375,835
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 1342146 as yet unmatched pairs. 35256 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:146,164,454
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 1338846 as yet unmatched pairs. 31952 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:150,133,660
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 1338307 as yet unmatched pairs. 31409 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:150,403,207
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 1353054 as yet unmatched pairs. 46149 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:150,444,251
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 1332689 as yet unmatched pairs. 25779 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 2s. Last read position: chr5:151,751,882
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 1326917 as yet unmatched pairs. 19994 records in RAM.
INFO 2026-06-08 09:09:55 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:166,382,454
INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 1324313 as yet unmatched pairs. 17386 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,738
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 1338714 as yet unmatched pairs. 31776 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:173,090,937
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 1319747 as yet unmatched pairs. 12809 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:177,396,966
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 1316822 as yet unmatched pairs. 9879 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:179,618,008
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 1314074 as yet unmatched pairs. 7125 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:179,824,190
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 1316992 as yet unmatched pairs. 10038 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:181,238,200
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 1316932 as yet unmatched pairs. 9966 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr6:6,248,343
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 1305114 as yet unmatched pairs. 81825 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:7,904,711
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 1302929 as yet unmatched pairs. 79637 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:24,714,280
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 1299437 as yet unmatched pairs. 76122 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:26,234,347
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 1296682 as yet unmatched pairs. 73363 records in RAM.
INFO 2026-06-08 09:10:16 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 3s. Last read position: chr6:27,814,521
INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 1298393 as yet unmatched pairs. 75074 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,757
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 1304459 as yet unmatched pairs. 81131 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:30,684,778
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 1289353 as yet unmatched pairs. 66021 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,075
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 1295754 as yet unmatched pairs. 72419 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:31,633,412
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 1284169 as yet unmatched pairs. 60826 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:31,815,913
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 1280619 as yet unmatched pairs. 57270 records in RAM.
INFO 2026-06-08 09:10:26 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,826
INFO 2026-06-08 09:10:26 MarkDuplicates Tracking 1284881 as yet unmatched pairs. 61529 records in RAM.
INFO 2026-06-08 09:10:28 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:31,969,659
INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 1276174 as yet unmatched pairs. 52810 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:32,581,726
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 1274834 as yet unmatched pairs. 51458 records in RAM.
INFO 2026-06-08 09:10:31 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:33,201,809
INFO 2026-06-08 09:10:31 MarkDuplicates Tracking 1272596 as yet unmatched pairs. 49210 records in RAM.
INFO 2026-06-08 09:10:33 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr6:33,455,835
INFO 2026-06-08 09:10:33 MarkDuplicates Tracking 1267999 as yet unmatched pairs. 44612 records in RAM.
INFO 2026-06-08 09:10:36 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr6:35,420,227
INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 1265063 as yet unmatched pairs. 41676 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:41,282,587
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 1262035 as yet unmatched pairs. 38634 records in RAM.
INFO 2026-06-08 09:10:39 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:43,225,817
INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 1260165 as yet unmatched pairs. 36754 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:44,251,820
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 1256958 as yet unmatched pairs. 33519 records in RAM.
INFO 2026-06-08 09:10:42 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:56,552,698
INFO 2026-06-08 09:10:42 MarkDuplicates Tracking 1253052 as yet unmatched pairs. 29600 records in RAM.
INFO 2026-06-08 09:10:44 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:75,151,889
INFO 2026-06-08 09:10:44 MarkDuplicates Tracking 1250979 as yet unmatched pairs. 27504 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:85,622,470
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 1247862 as yet unmatched pairs. 24384 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:106,512,531
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 1245439 as yet unmatched pairs. 21943 records in RAM.
INFO 2026-06-08 09:10:49 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:112,187,518
INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 1242514 as yet unmatched pairs. 19000 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:130,869,819
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 1240484 as yet unmatched pairs. 16963 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:137,878,571
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 1237178 as yet unmatched pairs. 13647 records in RAM.
INFO 2026-06-08 09:10:54 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:147,260,655
INFO 2026-06-08 09:10:54 MarkDuplicates Tracking 1234109 as yet unmatched pairs. 10570 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:157,206,181
INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 1231195 as yet unmatched pairs. 7640 records in RAM.
INFO 2026-06-08 09:10:58 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr6:159,688,226
INFO 2026-06-08 09:10:58 MarkDuplicates Tracking 1230701 as yet unmatched pairs. 7142 records in RAM.
INFO 2026-06-08 09:11:01 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 3s. Last read position: chr6:169,217,702
INFO 2026-06-08 09:11:01 MarkDuplicates Tracking 1225987 as yet unmatched pairs. 2425 records in RAM.
INFO 2026-06-08 09:11:04 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 2s. Last read position: chr7:1,445,336
INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 1222862 as yet unmatched pairs. 85066 records in RAM.
INFO 2026-06-08 09:11:06 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:2,731,414
INFO 2026-06-08 09:11:06 MarkDuplicates Tracking 1219380 as yet unmatched pairs. 81579 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:5,501,437
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 1214935 as yet unmatched pairs. 77133 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,185
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 1230043 as yet unmatched pairs. 92241 records in RAM.
INFO 2026-06-08 09:11:11 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:6,801,379
INFO 2026-06-08 09:11:11 MarkDuplicates Tracking 1208615 as yet unmatched pairs. 70812 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:16,801,701
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 1209770 as yet unmatched pairs. 71963 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:29,400,582
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 1203782 as yet unmatched pairs. 65962 records in RAM.
INFO 2026-06-08 09:11:16 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:43,876,761
INFO 2026-06-08 09:11:16 MarkDuplicates Tracking 1200951 as yet unmatched pairs. 63125 records in RAM.
INFO 2026-06-08 09:11:17 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:44,763,288
INFO 2026-06-08 09:11:17 MarkDuplicates Tracking 1198352 as yet unmatched pairs. 60513 records in RAM.
INFO 2026-06-08 09:11:19 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:56,060,328
INFO 2026-06-08 09:11:19 MarkDuplicates Tracking 1195171 as yet unmatched pairs. 57331 records in RAM.
INFO 2026-06-08 09:11:21 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:73,223,917
INFO 2026-06-08 09:11:21 MarkDuplicates Tracking 1192070 as yet unmatched pairs. 54230 records in RAM.
INFO 2026-06-08 09:11:22 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:74,353,987
INFO 2026-06-08 09:11:22 MarkDuplicates Tracking 1190698 as yet unmatched pairs. 52853 records in RAM.
INFO 2026-06-08 09:11:24 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:76,060,487
INFO 2026-06-08 09:11:24 MarkDuplicates Tracking 1189263 as yet unmatched pairs. 51398 records in RAM.
INFO 2026-06-08 09:11:25 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:90,154,510
INFO 2026-06-08 09:11:25 MarkDuplicates Tracking 1184466 as yet unmatched pairs. 46588 records in RAM.
INFO 2026-06-08 09:11:27 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:94,401,576
INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 1193941 as yet unmatched pairs. 56049 records in RAM.
INFO 2026-06-08 09:11:29 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:94,417,789
INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 1182064 as yet unmatched pairs. 44168 records in RAM.
INFO 2026-06-08 09:11:30 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:98,192,305
INFO 2026-06-08 09:11:30 MarkDuplicates Tracking 1175710 as yet unmatched pairs. 37814 records in RAM.
INFO 2026-06-08 09:11:32 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:100,024,202
INFO 2026-06-08 09:11:32 MarkDuplicates Tracking 1173171 as yet unmatched pairs. 35273 records in RAM.
INFO 2026-06-08 09:11:35 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr7:100,683,849
INFO 2026-06-08 09:11:35 MarkDuplicates Tracking 1169915 as yet unmatched pairs. 32016 records in RAM.
INFO 2026-06-08 09:11:38 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr7:100,993,615
INFO 2026-06-08 09:11:38 MarkDuplicates Tracking 1167046 as yet unmatched pairs. 29140 records in RAM.
INFO 2026-06-08 09:11:39 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,494
INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 1166644 as yet unmatched pairs. 28738 records in RAM.
INFO 2026-06-08 09:11:40 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:102,350,587
INFO 2026-06-08 09:11:40 MarkDuplicates Tracking 1163271 as yet unmatched pairs. 25363 records in RAM.
INFO 2026-06-08 09:11:42 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:106,268,574
INFO 2026-06-08 09:11:42 MarkDuplicates Tracking 1162531 as yet unmatched pairs. 24617 records in RAM.
INFO 2026-06-08 09:11:43 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:116,912,119
INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 1159056 as yet unmatched pairs. 21137 records in RAM.
INFO 2026-06-08 09:11:45 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:127,990,993
INFO 2026-06-08 09:11:45 MarkDuplicates Tracking 1159696 as yet unmatched pairs. 21764 records in RAM.
INFO 2026-06-08 09:11:47 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:131,397,347
INFO 2026-06-08 09:11:47 MarkDuplicates Tracking 1153925 as yet unmatched pairs. 15968 records in RAM.
INFO 2026-06-08 09:11:48 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:138,917,576
INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 1151592 as yet unmatched pairs. 13627 records in RAM.
INFO 2026-06-08 09:11:50 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:143,382,591
INFO 2026-06-08 09:11:50 MarkDuplicates Tracking 1149308 as yet unmatched pairs. 11340 records in RAM.
INFO 2026-06-08 09:11:52 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:149,028,331
INFO 2026-06-08 09:11:52 MarkDuplicates Tracking 1147207 as yet unmatched pairs. 9239 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 2s. Last read position: chr7:151,075,363
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 1143371 as yet unmatched pairs. 5386 records in RAM.
INFO 2026-06-08 09:11:56 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:157,006,520
INFO 2026-06-08 09:11:56 MarkDuplicates Tracking 1139400 as yet unmatched pairs. 1412 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 2s. Last read position: chr8:11,808,508
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 1140625 as yet unmatched pairs. 67134 records in RAM.
INFO 2026-06-08 09:12:00 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr8:20,197,433
INFO 2026-06-08 09:12:00 MarkDuplicates Tracking 1133992 as yet unmatched pairs. 60498 records in RAM.
INFO 2026-06-08 09:12:02 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr8:22,690,398
INFO 2026-06-08 09:12:02 MarkDuplicates Tracking 1130913 as yet unmatched pairs. 57416 records in RAM.
INFO 2026-06-08 09:12:04 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr8:29,118,963
INFO 2026-06-08 09:12:04 MarkDuplicates Tracking 1128134 as yet unmatched pairs. 54619 records in RAM.
INFO 2026-06-08 09:12:05 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr8:38,121,085
INFO 2026-06-08 09:12:05 MarkDuplicates Tracking 1124614 as yet unmatched pairs. 51097 records in RAM.
INFO 2026-06-08 09:12:07 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr8:39,054,480
INFO 2026-06-08 09:12:07 MarkDuplicates Tracking 1122921 as yet unmatched pairs. 49394 records in RAM.
INFO 2026-06-08 09:12:10 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 3s. Last read position: chr8:47,967,370
INFO 2026-06-08 09:12:10 MarkDuplicates Tracking 1119476 as yet unmatched pairs. 45949 records in RAM.
INFO 2026-06-08 09:12:12 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr8:65,779,784
INFO 2026-06-08 09:12:12 MarkDuplicates Tracking 1116442 as yet unmatched pairs. 42907 records in RAM.
INFO 2026-06-08 09:12:14 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr8:76,856,234
INFO 2026-06-08 09:12:14 MarkDuplicates Tracking 1113794 as yet unmatched pairs. 40237 records in RAM.
INFO 2026-06-08 09:12:16 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr8:97,644,594
INFO 2026-06-08 09:12:16 MarkDuplicates Tracking 1114469 as yet unmatched pairs. 40901 records in RAM.
INFO 2026-06-08 09:12:17 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr8:100,717,879
INFO 2026-06-08 09:12:17 MarkDuplicates Tracking 1114750 as yet unmatched pairs. 41180 records in RAM.
INFO 2026-06-08 09:12:19 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr8:116,644,994
INFO 2026-06-08 09:12:19 MarkDuplicates Tracking 1106886 as yet unmatched pairs. 33306 records in RAM.
INFO 2026-06-08 09:13:17 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 57s. Last read position: chr8:127,738,251
INFO 2026-06-08 09:13:17 MarkDuplicates Tracking 1104290 as yet unmatched pairs. 30703 records in RAM.
INFO 2026-06-08 09:13:19 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,020,948
INFO 2026-06-08 09:13:19 MarkDuplicates Tracking 1104175 as yet unmatched pairs. 30583 records in RAM.
INFO 2026-06-08 09:13:20 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,791,845
INFO 2026-06-08 09:13:20 MarkDuplicates Tracking 1097459 as yet unmatched pairs. 23866 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,112
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 1103002 as yet unmatched pairs. 29409 records in RAM.
INFO 2026-06-08 09:13:23 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,049
INFO 2026-06-08 09:13:23 MarkDuplicates Tracking 1094652 as yet unmatched pairs. 21059 records in RAM.
INFO 2026-06-08 09:13:24 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,606
INFO 2026-06-08 09:13:24 MarkDuplicates Tracking 1099302 as yet unmatched pairs. 25702 records in RAM.
INFO 2026-06-08 09:13:26 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,579
INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 1091868 as yet unmatched pairs. 18268 records in RAM.
INFO 2026-06-08 09:13:28 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,269
INFO 2026-06-08 09:13:28 MarkDuplicates Tracking 1089667 as yet unmatched pairs. 16067 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,917,773
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 1091472 as yet unmatched pairs. 17871 records in RAM.
INFO 2026-06-08 09:13:31 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,927,727
INFO 2026-06-08 09:13:31 MarkDuplicates Tracking 1084979 as yet unmatched pairs. 11367 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:144,191,733
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 1079751 as yet unmatched pairs. 6126 records in RAM.
INFO 2026-06-08 09:13:34 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:144,501,630
INFO 2026-06-08 09:13:34 MarkDuplicates Tracking 1075632 as yet unmatched pairs. 1998 records in RAM.
INFO 2026-06-08 09:13:36 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:5,968,408
INFO 2026-06-08 09:13:36 MarkDuplicates Tracking 1072254 as yet unmatched pairs. 66312 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr9:21,970,949
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 1070892 as yet unmatched pairs. 64905 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:34,709,398
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 1067056 as yet unmatched pairs. 61059 records in RAM.
INFO 2026-06-08 09:13:42 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 2s. Last read position: chr9:35,714,323
INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 1064611 as yet unmatched pairs. 58599 records in RAM.
INFO 2026-06-08 09:13:43 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:68,242,148
INFO 2026-06-08 09:13:43 MarkDuplicates Tracking 1060960 as yet unmatched pairs. 54943 records in RAM.
INFO 2026-06-08 09:13:46 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 2s. Last read position: chr9:77,403,255
INFO 2026-06-08 09:13:46 MarkDuplicates Tracking 1058627 as yet unmatched pairs. 52604 records in RAM.
INFO 2026-06-08 09:13:48 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:92,047,551
INFO 2026-06-08 09:13:48 MarkDuplicates Tracking 1055961 as yet unmatched pairs. 49935 records in RAM.
INFO 2026-06-08 09:13:49 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:95,468,836
INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 1052987 as yet unmatched pairs. 46953 records in RAM.
INFO 2026-06-08 09:13:51 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:99,828,761
INFO 2026-06-08 09:13:51 MarkDuplicates Tracking 1051190 as yet unmatched pairs. 45144 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:110,136,500
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 1046518 as yet unmatched pairs. 40464 records in RAM.
INFO 2026-06-08 09:13:54 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:114,240,218
INFO 2026-06-08 09:13:54 MarkDuplicates Tracking 1044523 as yet unmatched pairs. 38462 records in RAM.
INFO 2026-06-08 09:13:56 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:121,096,392
INFO 2026-06-08 09:13:56 MarkDuplicates Tracking 1040852 as yet unmatched pairs. 34779 records in RAM.
INFO 2026-06-08 09:13:57 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:125,238,677
INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 1040296 as yet unmatched pairs. 34218 records in RAM.
INFO 2026-06-08 09:13:59 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:127,896,263
INFO 2026-06-08 09:13:59 MarkDuplicates Tracking 1035278 as yet unmatched pairs. 29178 records in RAM.
INFO 2026-06-08 09:14:00 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:128,580,921
INFO 2026-06-08 09:14:00 MarkDuplicates Tracking 1033625 as yet unmatched pairs. 27525 records in RAM.
INFO 2026-06-08 09:14:02 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:129,176,855
INFO 2026-06-08 09:14:02 MarkDuplicates Tracking 1029638 as yet unmatched pairs. 23526 records in RAM.
INFO 2026-06-08 09:14:04 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:131,436,685
INFO 2026-06-08 09:14:04 MarkDuplicates Tracking 1026654 as yet unmatched pairs. 20531 records in RAM.
INFO 2026-06-08 09:14:06 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:133,350,013
INFO 2026-06-08 09:14:06 MarkDuplicates Tracking 1030681 as yet unmatched pairs. 24545 records in RAM.
INFO 2026-06-08 09:14:08 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr9:134,804,973
INFO 2026-06-08 09:14:08 MarkDuplicates Tracking 1020955 as yet unmatched pairs. 14817 records in RAM.
INFO 2026-06-08 09:14:10 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:136,464,452
INFO 2026-06-08 09:14:10 MarkDuplicates Tracking 1017738 as yet unmatched pairs. 11580 records in RAM.
INFO 2026-06-08 09:14:11 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr9:136,832,322
INFO 2026-06-08 09:14:11 MarkDuplicates Tracking 1014697 as yet unmatched pairs. 8524 records in RAM.
INFO 2026-06-08 09:14:13 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:137,169,043
INFO 2026-06-08 09:14:13 MarkDuplicates Tracking 1011220 as yet unmatched pairs. 5040 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:137,710,981
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 1007056 as yet unmatched pairs. 873 records in RAM.
INFO 2026-06-08 09:14:17 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 2s. Last read position: chr10:6,146,381
INFO 2026-06-08 09:14:17 MarkDuplicates Tracking 1003934 as yet unmatched pairs. 56208 records in RAM.
INFO 2026-06-08 09:14:19 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 2s. Last read position: chr10:19,817,151
INFO 2026-06-08 09:14:19 MarkDuplicates Tracking 1001434 as yet unmatched pairs. 53680 records in RAM.
INFO 2026-06-08 09:14:21 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 2s. Last read position: chr10:32,018,122
INFO 2026-06-08 09:14:21 MarkDuplicates Tracking 1003156 as yet unmatched pairs. 55401 records in RAM.
INFO 2026-06-08 09:14:23 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr10:37,820,918
INFO 2026-06-08 09:14:23 MarkDuplicates Tracking 995893 as yet unmatched pairs. 48136 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:47,523,298
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 993914 as yet unmatched pairs. 46139 records in RAM.
INFO 2026-06-08 09:14:26 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:67,891,401
INFO 2026-06-08 09:14:26 MarkDuplicates Tracking 991254 as yet unmatched pairs. 43468 records in RAM.
INFO 2026-06-08 09:14:27 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:72,223,893
INFO 2026-06-08 09:14:27 MarkDuplicates Tracking 989222 as yet unmatched pairs. 41436 records in RAM.
INFO 2026-06-08 09:14:29 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:74,843,435
INFO 2026-06-08 09:14:29 MarkDuplicates Tracking 985857 as yet unmatched pairs. 38068 records in RAM.
INFO 2026-06-08 09:14:30 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:79,711,821
INFO 2026-06-08 09:14:30 MarkDuplicates Tracking 983484 as yet unmatched pairs. 35668 records in RAM.
INFO 2026-06-08 09:14:32 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:87,360,195
INFO 2026-06-08 09:14:32 MarkDuplicates Tracking 980351 as yet unmatched pairs. 32503 records in RAM.
INFO 2026-06-08 09:14:34 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:93,343,867
INFO 2026-06-08 09:14:34 MarkDuplicates Tracking 978061 as yet unmatched pairs. 30189 records in RAM.
INFO 2026-06-08 09:14:36 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:96,533,072
INFO 2026-06-08 09:14:36 MarkDuplicates Tracking 977274 as yet unmatched pairs. 29400 records in RAM.
INFO 2026-06-08 09:14:38 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr10:99,610,916
INFO 2026-06-08 09:14:38 MarkDuplicates Tracking 971997 as yet unmatched pairs. 24105 records in RAM.
INFO 2026-06-08 09:14:40 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr10:101,782,307
INFO 2026-06-08 09:14:40 MarkDuplicates Tracking 969226 as yet unmatched pairs. 21329 records in RAM.
INFO 2026-06-08 09:14:42 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:102,504,198
INFO 2026-06-08 09:14:42 MarkDuplicates Tracking 965767 as yet unmatched pairs. 17870 records in RAM.
INFO 2026-06-08 09:14:43 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:110,122,203
INFO 2026-06-08 09:14:43 MarkDuplicates Tracking 962514 as yet unmatched pairs. 14600 records in RAM.
INFO 2026-06-08 09:14:45 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:121,479,618
INFO 2026-06-08 09:14:45 MarkDuplicates Tracking 959988 as yet unmatched pairs. 12064 records in RAM.
INFO 2026-06-08 09:14:46 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:122,582,668
INFO 2026-06-08 09:14:46 MarkDuplicates Tracking 962029 as yet unmatched pairs. 14096 records in RAM.
INFO 2026-06-08 09:14:48 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:122,595,517
INFO 2026-06-08 09:14:48 MarkDuplicates Tracking 964744 as yet unmatched pairs. 16811 records in RAM.
INFO 2026-06-08 09:14:49 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:122,609,130
INFO 2026-06-08 09:14:49 MarkDuplicates Tracking 956852 as yet unmatched pairs. 8919 records in RAM.
INFO 2026-06-08 09:14:50 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:122,637,217
INFO 2026-06-08 09:14:50 MarkDuplicates Tracking 954438 as yet unmatched pairs. 6499 records in RAM.
INFO 2026-06-08 09:14:52 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:128,105,008
INFO 2026-06-08 09:14:52 MarkDuplicates Tracking 950454 as yet unmatched pairs. 2511 records in RAM.
INFO 2026-06-08 09:14:55 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr11:308,219
INFO 2026-06-08 09:14:55 MarkDuplicates Tracking 949613 as yet unmatched pairs. 126701 records in RAM.
INFO 2026-06-08 09:14:56 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:597,420
INFO 2026-06-08 09:14:56 MarkDuplicates Tracking 944857 as yet unmatched pairs. 121938 records in RAM.
INFO 2026-06-08 09:14:58 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:848,554
INFO 2026-06-08 09:14:58 MarkDuplicates Tracking 941469 as yet unmatched pairs. 118550 records in RAM.
INFO 2026-06-08 09:15:00 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:1,018,725
INFO 2026-06-08 09:15:00 MarkDuplicates Tracking 939788 as yet unmatched pairs. 116865 records in RAM.
INFO 2026-06-08 09:15:01 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:1,074,895
INFO 2026-06-08 09:15:01 MarkDuplicates Tracking 939172 as yet unmatched pairs. 116247 records in RAM.
INFO 2026-06-08 09:15:03 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,078,364
INFO 2026-06-08 09:15:03 MarkDuplicates Tracking 996620 as yet unmatched pairs. 173684 records in RAM.
INFO 2026-06-08 09:15:05 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr11:1,083,450
INFO 2026-06-08 09:15:05 MarkDuplicates Tracking 946439 as yet unmatched pairs. 123502 records in RAM.
INFO 2026-06-08 09:15:08 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 2s. Last read position: chr11:1,085,818
INFO 2026-06-08 09:15:08 MarkDuplicates Tracking 939590 as yet unmatched pairs. 116652 records in RAM.
INFO 2026-06-08 09:15:09 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:1,090,813
INFO 2026-06-08 09:15:09 MarkDuplicates Tracking 934940 as yet unmatched pairs. 111999 records in RAM.
INFO 2026-06-08 09:15:11 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:1,228,654
INFO 2026-06-08 09:15:11 MarkDuplicates Tracking 925256 as yet unmatched pairs. 102308 records in RAM.
INFO 2026-06-08 09:15:13 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,848
INFO 2026-06-08 09:15:13 MarkDuplicates Tracking 922240 as yet unmatched pairs. 99292 records in RAM.
INFO 2026-06-08 09:15:14 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,545
INFO 2026-06-08 09:15:14 MarkDuplicates Tracking 918101 as yet unmatched pairs. 95139 records in RAM.
INFO 2026-06-08 09:15:15 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:1,260,366
INFO 2026-06-08 09:15:15 MarkDuplicates Tracking 916096 as yet unmatched pairs. 93134 records in RAM.
INFO 2026-06-08 09:15:17 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:2,929,113
INFO 2026-06-08 09:15:17 MarkDuplicates Tracking 911159 as yet unmatched pairs. 88189 records in RAM.
INFO 2026-06-08 09:15:19 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:6,601,591
INFO 2026-06-08 09:15:19 MarkDuplicates Tracking 907135 as yet unmatched pairs. 84164 records in RAM.
INFO 2026-06-08 09:15:20 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:9,780,463
INFO 2026-06-08 09:15:20 MarkDuplicates Tracking 903998 as yet unmatched pairs. 81015 records in RAM.
INFO 2026-06-08 09:15:22 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:16,744,665
INFO 2026-06-08 09:15:22 MarkDuplicates Tracking 901706 as yet unmatched pairs. 78716 records in RAM.
INFO 2026-06-08 09:15:23 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:32,091,304
INFO 2026-06-08 09:15:23 MarkDuplicates Tracking 899779 as yet unmatched pairs. 76787 records in RAM.
INFO 2026-06-08 09:15:25 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr11:43,816,347
INFO 2026-06-08 09:15:25 MarkDuplicates Tracking 897570 as yet unmatched pairs. 74577 records in RAM.
INFO 2026-06-08 09:15:27 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr11:46,312,861
INFO 2026-06-08 09:15:27 MarkDuplicates Tracking 898273 as yet unmatched pairs. 75279 records in RAM.
INFO 2026-06-08 09:15:29 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:47,413,784
INFO 2026-06-08 09:15:29 MarkDuplicates Tracking 890682 as yet unmatched pairs. 67687 records in RAM.
INFO 2026-06-08 09:15:31 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:57,745,909
INFO 2026-06-08 09:15:31 MarkDuplicates Tracking 887241 as yet unmatched pairs. 64243 records in RAM.
INFO 2026-06-08 09:15:33 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:61,329,503
INFO 2026-06-08 09:15:33 MarkDuplicates Tracking 884984 as yet unmatched pairs. 61985 records in RAM.
INFO 2026-06-08 09:15:34 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:62,523,672
INFO 2026-06-08 09:15:34 MarkDuplicates Tracking 882101 as yet unmatched pairs. 59096 records in RAM.
INFO 2026-06-08 09:15:36 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:62,627,111
INFO 2026-06-08 09:15:36 MarkDuplicates Tracking 879872 as yet unmatched pairs. 56866 records in RAM.
INFO 2026-06-08 09:15:38 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:63,902,675
INFO 2026-06-08 09:15:38 MarkDuplicates Tracking 876174 as yet unmatched pairs. 53162 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:64,344,877
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 872867 as yet unmatched pairs. 49854 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:65,120,998
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 876649 as yet unmatched pairs. 53631 records in RAM.
INFO 2026-06-08 09:15:43 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 2s. Last read position: chr11:65,607,307
INFO 2026-06-08 09:15:43 MarkDuplicates Tracking 866064 as yet unmatched pairs. 43037 records in RAM.
INFO 2026-06-08 09:15:45 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:65,893,242
INFO 2026-06-08 09:15:45 MarkDuplicates Tracking 862951 as yet unmatched pairs. 39920 records in RAM.
INFO 2026-06-08 09:15:47 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:66,843,172
INFO 2026-06-08 09:15:47 MarkDuplicates Tracking 859601 as yet unmatched pairs. 36570 records in RAM.
INFO 2026-06-08 09:15:49 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 2s. Last read position: chr11:67,584,758
INFO 2026-06-08 09:15:49 MarkDuplicates Tracking 860279 as yet unmatched pairs. 37240 records in RAM.
INFO 2026-06-08 09:15:50 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:68,784,960
INFO 2026-06-08 09:15:50 MarkDuplicates Tracking 853075 as yet unmatched pairs. 30035 records in RAM.
INFO 2026-06-08 09:15:52 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:72,007,219
INFO 2026-06-08 09:15:52 MarkDuplicates Tracking 851185 as yet unmatched pairs. 28143 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:73,394,522
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 847773 as yet unmatched pairs. 24731 records in RAM.
INFO 2026-06-08 09:15:55 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:76,537,921
INFO 2026-06-08 09:15:55 MarkDuplicates Tracking 844493 as yet unmatched pairs. 21448 records in RAM.
INFO 2026-06-08 09:15:57 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:86,807,887
INFO 2026-06-08 09:15:57 MarkDuplicates Tracking 842053 as yet unmatched pairs. 19004 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:102,866,416
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 839224 as yet unmatched pairs. 16175 records in RAM.
INFO 2026-06-08 09:16:00 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:117,136,455
INFO 2026-06-08 09:16:00 MarkDuplicates Tracking 835907 as yet unmatched pairs. 12857 records in RAM.
INFO 2026-06-08 09:16:01 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:118,900,047
INFO 2026-06-08 09:16:01 MarkDuplicates Tracking 833505 as yet unmatched pairs. 10453 records in RAM.
INFO 2026-06-08 09:16:03 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:120,431,886
INFO 2026-06-08 09:16:03 MarkDuplicates Tracking 830636 as yet unmatched pairs. 7583 records in RAM.
INFO 2026-06-08 09:16:04 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:125,582,395
INFO 2026-06-08 09:16:04 MarkDuplicates Tracking 829181 as yet unmatched pairs. 6126 records in RAM.
INFO 2026-06-08 09:16:06 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:130,159,950
INFO 2026-06-08 09:16:06 MarkDuplicates Tracking 825816 as yet unmatched pairs. 2760 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr12:2,566,500
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 821821 as yet unmatched pairs. 91650 records in RAM.
INFO 2026-06-08 09:16:10 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:6,354,508
INFO 2026-06-08 09:16:10 MarkDuplicates Tracking 819347 as yet unmatched pairs. 89175 records in RAM.
INFO 2026-06-08 09:16:11 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:6,770,468
INFO 2026-06-08 09:16:11 MarkDuplicates Tracking 817338 as yet unmatched pairs. 87161 records in RAM.
INFO 2026-06-08 09:16:14 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr12:7,499,037
INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 813252 as yet unmatched pairs. 83072 records in RAM.
INFO 2026-06-08 09:16:16 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:12,717,944
INFO 2026-06-08 09:16:16 MarkDuplicates Tracking 810972 as yet unmatched pairs. 80778 records in RAM.
INFO 2026-06-08 09:16:17 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:22,625,371
INFO 2026-06-08 09:16:17 MarkDuplicates Tracking 810105 as yet unmatched pairs. 79910 records in RAM.
INFO 2026-06-08 09:16:19 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 2s. Last read position: chr12:39,764,760
INFO 2026-06-08 09:16:19 MarkDuplicates Tracking 805358 as yet unmatched pairs. 75152 records in RAM.
INFO 2026-06-08 09:16:21 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:48,782,910
INFO 2026-06-08 09:16:21 MarkDuplicates Tracking 804092 as yet unmatched pairs. 73882 records in RAM.
INFO 2026-06-08 09:16:23 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,331
INFO 2026-06-08 09:16:23 MarkDuplicates Tracking 808347 as yet unmatched pairs. 78137 records in RAM.
INFO 2026-06-08 09:16:25 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 2s. Last read position: chr12:49,963,595
INFO 2026-06-08 09:16:25 MarkDuplicates Tracking 797499 as yet unmatched pairs. 67289 records in RAM.
INFO 2026-06-08 09:16:27 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:52,055,136
INFO 2026-06-08 09:16:27 MarkDuplicates Tracking 798266 as yet unmatched pairs. 68056 records in RAM.
INFO 2026-06-08 09:16:29 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:52,949,502
INFO 2026-06-08 09:16:29 MarkDuplicates Tracking 795582 as yet unmatched pairs. 65361 records in RAM.
INFO 2026-06-08 09:16:30 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,566
INFO 2026-06-08 09:16:30 MarkDuplicates Tracking 793440 as yet unmatched pairs. 63219 records in RAM.
INFO 2026-06-08 09:16:32 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:54,292,337
INFO 2026-06-08 09:16:32 MarkDuplicates Tracking 786604 as yet unmatched pairs. 56373 records in RAM.
INFO 2026-06-08 09:16:34 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:56,133,434
INFO 2026-06-08 09:16:34 MarkDuplicates Tracking 784563 as yet unmatched pairs. 54332 records in RAM.
INFO 2026-06-08 09:16:35 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:56,638,410
INFO 2026-06-08 09:16:35 MarkDuplicates Tracking 784979 as yet unmatched pairs. 54740 records in RAM.
INFO 2026-06-08 09:16:37 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:57,102,320
INFO 2026-06-08 09:16:37 MarkDuplicates Tracking 781277 as yet unmatched pairs. 51038 records in RAM.
INFO 2026-06-08 09:16:38 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:57,230,971
INFO 2026-06-08 09:16:38 MarkDuplicates Tracking 776873 as yet unmatched pairs. 46625 records in RAM.
INFO 2026-06-08 09:16:40 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:62,494,007
INFO 2026-06-08 09:16:40 MarkDuplicates Tracking 773581 as yet unmatched pairs. 43331 records in RAM.
INFO 2026-06-08 09:16:42 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:69,599,956
INFO 2026-06-08 09:16:42 MarkDuplicates Tracking 771525 as yet unmatched pairs. 41274 records in RAM.
INFO 2026-06-08 09:16:43 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:89,492,014
INFO 2026-06-08 09:16:43 MarkDuplicates Tracking 768267 as yet unmatched pairs. 38014 records in RAM.
INFO 2026-06-08 09:16:45 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:98,537,484
INFO 2026-06-08 09:16:45 MarkDuplicates Tracking 766578 as yet unmatched pairs. 36324 records in RAM.
INFO 2026-06-08 09:16:46 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:103,943,266
INFO 2026-06-08 09:16:46 MarkDuplicates Tracking 766602 as yet unmatched pairs. 36348 records in RAM.
INFO 2026-06-08 09:16:48 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:108,292,027
INFO 2026-06-08 09:16:48 MarkDuplicates Tracking 760119 as yet unmatched pairs. 29861 records in RAM.
INFO 2026-06-08 09:16:50 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:110,445,476
INFO 2026-06-08 09:16:50 MarkDuplicates Tracking 757298 as yet unmatched pairs. 27035 records in RAM.
INFO 2026-06-08 09:16:51 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:112,319,728
INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 754508 as yet unmatched pairs. 24239 records in RAM.
INFO 2026-06-08 09:16:53 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:115,961,319
INFO 2026-06-08 09:16:53 MarkDuplicates Tracking 751987 as yet unmatched pairs. 21714 records in RAM.
INFO 2026-06-08 09:16:55 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:120,173,754
INFO 2026-06-08 09:16:55 MarkDuplicates Tracking 750067 as yet unmatched pairs. 19785 records in RAM.
INFO 2026-06-08 09:16:56 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:120,695,126
INFO 2026-06-08 09:16:56 MarkDuplicates Tracking 746568 as yet unmatched pairs. 16283 records in RAM.
INFO 2026-06-08 09:16:58 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:122,319,243
INFO 2026-06-08 09:16:58 MarkDuplicates Tracking 742500 as yet unmatched pairs. 12215 records in RAM.
INFO 2026-06-08 09:16:59 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:123,704,633
INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 739424 as yet unmatched pairs. 9130 records in RAM.
INFO 2026-06-08 09:17:01 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:125,129,345
INFO 2026-06-08 09:17:01 MarkDuplicates Tracking 736622 as yet unmatched pairs. 6319 records in RAM.
INFO 2026-06-08 09:17:02 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:132,581,776
INFO 2026-06-08 09:17:02 MarkDuplicates Tracking 733718 as yet unmatched pairs. 3402 records in RAM.
INFO 2026-06-08 09:17:04 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 2s. Last read position: chr13:20,027,318
INFO 2026-06-08 09:17:04 MarkDuplicates Tracking 730863 as yet unmatched pairs. 23532 records in RAM.
INFO 2026-06-08 09:17:06 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr13:27,962,609
INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 728461 as yet unmatched pairs. 21119 records in RAM.
INFO 2026-06-08 09:17:08 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr13:37,587,951
INFO 2026-06-08 09:17:08 MarkDuplicates Tracking 726322 as yet unmatched pairs. 18967 records in RAM.
INFO 2026-06-08 09:17:09 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr13:46,372,292
INFO 2026-06-08 09:17:09 MarkDuplicates Tracking 721975 as yet unmatched pairs. 14611 records in RAM.
INFO 2026-06-08 09:17:11 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr13:75,292,115
INFO 2026-06-08 09:17:11 MarkDuplicates Tracking 719101 as yet unmatched pairs. 11737 records in RAM.
INFO 2026-06-08 09:17:12 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr13:98,797,410
INFO 2026-06-08 09:17:12 MarkDuplicates Tracking 716147 as yet unmatched pairs. 8777 records in RAM.
INFO 2026-06-08 09:17:14 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr13:110,183,062
INFO 2026-06-08 09:17:14 MarkDuplicates Tracking 714867 as yet unmatched pairs. 7493 records in RAM.
INFO 2026-06-08 09:17:16 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr13:110,642,501
INFO 2026-06-08 09:17:16 MarkDuplicates Tracking 709923 as yet unmatched pairs. 2549 records in RAM.
INFO 2026-06-08 09:17:18 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr14:20,457,049
INFO 2026-06-08 09:17:18 MarkDuplicates Tracking 708541 as yet unmatched pairs. 55158 records in RAM.
INFO 2026-06-08 09:17:20 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr14:22,845,766
INFO 2026-06-08 09:17:20 MarkDuplicates Tracking 704483 as yet unmatched pairs. 51100 records in RAM.
INFO 2026-06-08 09:17:22 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:23,968,772
INFO 2026-06-08 09:17:22 MarkDuplicates Tracking 702294 as yet unmatched pairs. 48911 records in RAM.
INFO 2026-06-08 09:17:24 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr14:24,417,265
INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 697946 as yet unmatched pairs. 44551 records in RAM.
INFO 2026-06-08 09:17:26 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:36,663,081
INFO 2026-06-08 09:17:26 MarkDuplicates Tracking 694990 as yet unmatched pairs. 41585 records in RAM.
INFO 2026-06-08 09:17:27 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:51,998,534
INFO 2026-06-08 09:17:27 MarkDuplicates Tracking 693406 as yet unmatched pairs. 39974 records in RAM.
INFO 2026-06-08 09:17:29 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:59,464,727
INFO 2026-06-08 09:17:29 MarkDuplicates Tracking 689863 as yet unmatched pairs. 36431 records in RAM.
INFO 2026-06-08 09:17:31 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:64,942,633
INFO 2026-06-08 09:17:31 MarkDuplicates Tracking 686993 as yet unmatched pairs. 33553 records in RAM.
INFO 2026-06-08 09:17:32 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:69,771,024
INFO 2026-06-08 09:17:32 MarkDuplicates Tracking 684655 as yet unmatched pairs. 31215 records in RAM.
INFO 2026-06-08 09:17:34 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:74,764,023
INFO 2026-06-08 09:17:34 MarkDuplicates Tracking 681349 as yet unmatched pairs. 27904 records in RAM.
INFO 2026-06-08 09:17:35 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:77,557,046
INFO 2026-06-08 09:17:35 MarkDuplicates Tracking 678699 as yet unmatched pairs. 25252 records in RAM.
INFO 2026-06-08 09:17:37 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:92,958,202
INFO 2026-06-08 09:17:37 MarkDuplicates Tracking 676079 as yet unmatched pairs. 22628 records in RAM.
INFO 2026-06-08 09:17:38 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:100,293,310
INFO 2026-06-08 09:17:38 MarkDuplicates Tracking 673179 as yet unmatched pairs. 19724 records in RAM.
INFO 2026-06-08 09:17:40 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:102,085,359
INFO 2026-06-08 09:17:40 MarkDuplicates Tracking 671079 as yet unmatched pairs. 17624 records in RAM.
INFO 2026-06-08 09:17:42 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:104,703,413
INFO 2026-06-08 09:17:42 MarkDuplicates Tracking 668046 as yet unmatched pairs. 14589 records in RAM.
INFO 2026-06-08 09:17:43 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:104,948,221
INFO 2026-06-08 09:17:43 MarkDuplicates Tracking 663817 as yet unmatched pairs. 10360 records in RAM.
INFO 2026-06-08 09:17:44 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,221
INFO 2026-06-08 09:17:44 MarkDuplicates Tracking 663674 as yet unmatched pairs. 10211 records in RAM.
INFO 2026-06-08 09:17:46 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,568
INFO 2026-06-08 09:17:46 MarkDuplicates Tracking 661677 as yet unmatched pairs. 8213 records in RAM.
INFO 2026-06-08 09:17:48 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,076
INFO 2026-06-08 09:17:48 MarkDuplicates Tracking 664919 as yet unmatched pairs. 11454 records in RAM.
INFO 2026-06-08 09:17:49 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,483
INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 656720 as yet unmatched pairs. 3255 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr15:29,708,668
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 651832 as yet unmatched pairs. 45380 records in RAM.
INFO 2026-06-08 09:17:53 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr15:34,363,614
INFO 2026-06-08 09:17:53 MarkDuplicates Tracking 649436 as yet unmatched pairs. 42984 records in RAM.
INFO 2026-06-08 09:17:54 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:40,356,181
INFO 2026-06-08 09:17:54 MarkDuplicates Tracking 647921 as yet unmatched pairs. 41466 records in RAM.
INFO 2026-06-08 09:17:56 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:41,856,963
INFO 2026-06-08 09:17:56 MarkDuplicates Tracking 643355 as yet unmatched pairs. 36900 records in RAM.
INFO 2026-06-08 09:17:57 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:43,765,521
INFO 2026-06-08 09:17:57 MarkDuplicates Tracking 644269 as yet unmatched pairs. 37814 records in RAM.
INFO 2026-06-08 09:17:59 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:45,178,263
INFO 2026-06-08 09:17:59 MarkDuplicates Tracking 638493 as yet unmatched pairs. 32037 records in RAM.
INFO 2026-06-08 09:18:01 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr15:52,213,188
INFO 2026-06-08 09:18:01 MarkDuplicates Tracking 635804 as yet unmatched pairs. 29347 records in RAM.
INFO 2026-06-08 09:18:02 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr15:59,679,657
INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 634272 as yet unmatched pairs. 27814 records in RAM.
INFO 2026-06-08 09:18:05 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr15:63,532,693
INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 630964 as yet unmatched pairs. 24506 records in RAM.
INFO 2026-06-08 09:18:07 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr15:66,499,368
INFO 2026-06-08 09:18:07 MarkDuplicates Tracking 630011 as yet unmatched pairs. 23535 records in RAM.
INFO 2026-06-08 09:18:08 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:72,199,578
INFO 2026-06-08 09:18:08 MarkDuplicates Tracking 627864 as yet unmatched pairs. 21388 records in RAM.
INFO 2026-06-08 09:18:10 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:74,034,500
INFO 2026-06-08 09:18:10 MarkDuplicates Tracking 625385 as yet unmatched pairs. 18902 records in RAM.
INFO 2026-06-08 09:18:12 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:75,650,395
INFO 2026-06-08 09:18:12 MarkDuplicates Tracking 618897 as yet unmatched pairs. 12413 records in RAM.
INFO 2026-06-08 09:18:13 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:81,002,063
INFO 2026-06-08 09:18:13 MarkDuplicates Tracking 616827 as yet unmatched pairs. 10341 records in RAM.
INFO 2026-06-08 09:18:15 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:88,845,641
INFO 2026-06-08 09:18:15 MarkDuplicates Tracking 613280 as yet unmatched pairs. 6774 records in RAM.
INFO 2026-06-08 09:18:16 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:90,228,626
INFO 2026-06-08 09:18:16 MarkDuplicates Tracking 610858 as yet unmatched pairs. 4344 records in RAM.
INFO 2026-06-08 09:18:18 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:99,130,185
INFO 2026-06-08 09:18:18 MarkDuplicates Tracking 607834 as yet unmatched pairs. 1319 records in RAM.
INFO 2026-06-08 09:18:20 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr16:547,594
INFO 2026-06-08 09:18:20 MarkDuplicates Tracking 607062 as yet unmatched pairs. 88947 records in RAM.
INFO 2026-06-08 09:18:21 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:1,201,645
INFO 2026-06-08 09:18:21 MarkDuplicates Tracking 600830 as yet unmatched pairs. 82715 records in RAM.
INFO 2026-06-08 09:18:23 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:1,975,024
INFO 2026-06-08 09:18:23 MarkDuplicates Tracking 597437 as yet unmatched pairs. 79319 records in RAM.
INFO 2026-06-08 09:18:25 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:2,118,344
INFO 2026-06-08 09:18:25 MarkDuplicates Tracking 594187 as yet unmatched pairs. 76068 records in RAM.
INFO 2026-06-08 09:18:26 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:2,763,782
INFO 2026-06-08 09:18:26 MarkDuplicates Tracking 592444 as yet unmatched pairs. 74325 records in RAM.
INFO 2026-06-08 09:18:28 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:3,021,253
INFO 2026-06-08 09:18:28 MarkDuplicates Tracking 588464 as yet unmatched pairs. 70345 records in RAM.
INFO 2026-06-08 09:18:30 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr16:4,469,242
INFO 2026-06-08 09:18:30 MarkDuplicates Tracking 584462 as yet unmatched pairs. 66343 records in RAM.
INFO 2026-06-08 09:18:33 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 2s. Last read position: chr16:11,679,813
INFO 2026-06-08 09:18:33 MarkDuplicates Tracking 581738 as yet unmatched pairs. 63619 records in RAM.
INFO 2026-06-08 09:18:34 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:14,930,127
INFO 2026-06-08 09:18:34 MarkDuplicates Tracking 579468 as yet unmatched pairs. 61347 records in RAM.
INFO 2026-06-08 09:18:36 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:16,267,068
INFO 2026-06-08 09:18:36 MarkDuplicates Tracking 577347 as yet unmatched pairs. 59226 records in RAM.
INFO 2026-06-08 09:18:37 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:18,318,031
INFO 2026-06-08 09:18:37 MarkDuplicates Tracking 576391 as yet unmatched pairs. 58270 records in RAM.
INFO 2026-06-08 09:18:39 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:18,519,641
INFO 2026-06-08 09:18:39 MarkDuplicates Tracking 575956 as yet unmatched pairs. 57835 records in RAM.
INFO 2026-06-08 09:18:40 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:21,402,352
INFO 2026-06-08 09:18:40 MarkDuplicates Tracking 572384 as yet unmatched pairs. 54263 records in RAM.
INFO 2026-06-08 09:18:42 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,451
INFO 2026-06-08 09:18:42 MarkDuplicates Tracking 572063 as yet unmatched pairs. 53942 records in RAM.
INFO 2026-06-08 09:18:43 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,535
INFO 2026-06-08 09:18:43 MarkDuplicates Tracking 571544 as yet unmatched pairs. 53423 records in RAM.
INFO 2026-06-08 09:18:44 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:27,465,396
INFO 2026-06-08 09:18:44 MarkDuplicates Tracking 568265 as yet unmatched pairs. 50143 records in RAM.
INFO 2026-06-08 09:18:46 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:28,824,466
INFO 2026-06-08 09:18:46 MarkDuplicates Tracking 566782 as yet unmatched pairs. 48660 records in RAM.
INFO 2026-06-08 09:18:47 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:29,464,049
INFO 2026-06-08 09:18:47 MarkDuplicates Tracking 564573 as yet unmatched pairs. 46451 records in RAM.
INFO 2026-06-08 09:18:49 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:29,859,507
INFO 2026-06-08 09:18:49 MarkDuplicates Tracking 562025 as yet unmatched pairs. 43903 records in RAM.
INFO 2026-06-08 09:18:50 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:30,200,810
INFO 2026-06-08 09:18:50 MarkDuplicates Tracking 559183 as yet unmatched pairs. 41059 records in RAM.
INFO 2026-06-08 09:18:52 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:30,720,964
INFO 2026-06-08 09:18:52 MarkDuplicates Tracking 557287 as yet unmatched pairs. 39163 records in RAM.
INFO 2026-06-08 09:18:53 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:31,185,154
INFO 2026-06-08 09:18:53 MarkDuplicates Tracking 556725 as yet unmatched pairs. 38592 records in RAM.
INFO 2026-06-08 09:18:55 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:48,561,694
INFO 2026-06-08 09:18:55 MarkDuplicates Tracking 550606 as yet unmatched pairs. 32473 records in RAM.
INFO 2026-06-08 09:18:57 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr16:56,868,346
INFO 2026-06-08 09:18:57 MarkDuplicates Tracking 547692 as yet unmatched pairs. 29559 records in RAM.
INFO 2026-06-08 09:18:59 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 2s. Last read position: chr16:58,537,069
INFO 2026-06-08 09:18:59 MarkDuplicates Tracking 545190 as yet unmatched pairs. 27052 records in RAM.
INFO 2026-06-08 09:19:02 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 3s. Last read position: chr16:67,228,388
INFO 2026-06-08 09:19:02 MarkDuplicates Tracking 542277 as yet unmatched pairs. 24139 records in RAM.
INFO 2026-06-08 09:19:04 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:68,361,090
INFO 2026-06-08 09:19:04 MarkDuplicates Tracking 538406 as yet unmatched pairs. 20267 records in RAM.
INFO 2026-06-08 09:19:05 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:70,267,689
INFO 2026-06-08 09:19:05 MarkDuplicates Tracking 536136 as yet unmatched pairs. 17986 records in RAM.
INFO 2026-06-08 09:19:07 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:74,463,431
INFO 2026-06-08 09:19:07 MarkDuplicates Tracking 533256 as yet unmatched pairs. 15106 records in RAM.
INFO 2026-06-08 09:19:08 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:81,705,520
INFO 2026-06-08 09:19:08 MarkDuplicates Tracking 530720 as yet unmatched pairs. 12570 records in RAM.
INFO 2026-06-08 09:19:10 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:87,702,137
INFO 2026-06-08 09:19:10 MarkDuplicates Tracking 526989 as yet unmatched pairs. 8834 records in RAM.
INFO 2026-06-08 09:19:11 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:88,734,668
INFO 2026-06-08 09:19:11 MarkDuplicates Tracking 524056 as yet unmatched pairs. 5901 records in RAM.
INFO 2026-06-08 09:19:13 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:89,694,933
INFO 2026-06-08 09:19:13 MarkDuplicates Tracking 520689 as yet unmatched pairs. 2533 records in RAM.
INFO 2026-06-08 09:19:16 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 3s. Last read position: chr17:1,361,285
INFO 2026-06-08 09:19:16 MarkDuplicates Tracking 520733 as yet unmatched pairs. 197929 records in RAM.
INFO 2026-06-08 09:19:18 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:2,030,174
INFO 2026-06-08 09:19:18 MarkDuplicates Tracking 514032 as yet unmatched pairs. 191227 records in RAM.
INFO 2026-06-08 09:19:20 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:4,064,532
INFO 2026-06-08 09:19:20 MarkDuplicates Tracking 511488 as yet unmatched pairs. 188678 records in RAM.
INFO 2026-06-08 09:19:21 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:4,946,707
INFO 2026-06-08 09:19:21 MarkDuplicates Tracking 513191 as yet unmatched pairs. 190379 records in RAM.
INFO 2026-06-08 09:19:23 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:7,224,342
INFO 2026-06-08 09:19:23 MarkDuplicates Tracking 505371 as yet unmatched pairs. 182559 records in RAM.
INFO 2026-06-08 09:19:25 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:7,501,043
INFO 2026-06-08 09:19:25 MarkDuplicates Tracking 501565 as yet unmatched pairs. 178753 records in RAM.
INFO 2026-06-08 09:19:26 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:7,851,062
INFO 2026-06-08 09:19:26 MarkDuplicates Tracking 499502 as yet unmatched pairs. 176690 records in RAM.
INFO 2026-06-08 09:19:29 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr17:10,686,724
INFO 2026-06-08 09:19:29 MarkDuplicates Tracking 496099 as yet unmatched pairs. 173286 records in RAM.
INFO 2026-06-08 09:19:31 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr17:17,158,560
INFO 2026-06-08 09:19:31 MarkDuplicates Tracking 495178 as yet unmatched pairs. 172364 records in RAM.
INFO 2026-06-08 09:19:33 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:18,317,630
INFO 2026-06-08 09:19:33 MarkDuplicates Tracking 489982 as yet unmatched pairs. 167166 records in RAM.
INFO 2026-06-08 09:19:35 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:27,788,891
INFO 2026-06-08 09:19:35 MarkDuplicates Tracking 487641 as yet unmatched pairs. 164825 records in RAM.
INFO 2026-06-08 09:19:36 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:29,086,467
INFO 2026-06-08 09:19:36 MarkDuplicates Tracking 485260 as yet unmatched pairs. 162437 records in RAM.
INFO 2026-06-08 09:19:38 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:31,976,528
INFO 2026-06-08 09:19:38 MarkDuplicates Tracking 482711 as yet unmatched pairs. 159888 records in RAM.
INFO 2026-06-08 09:19:40 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:36,325,408
INFO 2026-06-08 09:19:40 MarkDuplicates Tracking 479305 as yet unmatched pairs. 156481 records in RAM.
INFO 2026-06-08 09:19:41 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:38,673,973
INFO 2026-06-08 09:19:41 MarkDuplicates Tracking 477616 as yet unmatched pairs. 154792 records in RAM.
INFO 2026-06-08 09:19:43 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:39,635,647
INFO 2026-06-08 09:19:43 MarkDuplicates Tracking 476425 as yet unmatched pairs. 153601 records in RAM.
INFO 2026-06-08 09:19:44 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:39,864,061
INFO 2026-06-08 09:19:44 MarkDuplicates Tracking 471518 as yet unmatched pairs. 148694 records in RAM.
INFO 2026-06-08 09:19:46 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:41,524,520
INFO 2026-06-08 09:19:46 MarkDuplicates Tracking 470770 as yet unmatched pairs. 147946 records in RAM.
INFO 2026-06-08 09:19:47 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:42,120,706
INFO 2026-06-08 09:19:47 MarkDuplicates Tracking 465867 as yet unmatched pairs. 143043 records in RAM.
INFO 2026-06-08 09:19:49 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:42,998,806
INFO 2026-06-08 09:19:49 MarkDuplicates Tracking 464995 as yet unmatched pairs. 142170 records in RAM.
INFO 2026-06-08 09:19:51 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:44,351,678
INFO 2026-06-08 09:19:51 MarkDuplicates Tracking 461045 as yet unmatched pairs. 138219 records in RAM.
INFO 2026-06-08 09:19:52 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:46,331,182
INFO 2026-06-08 09:19:52 MarkDuplicates Tracking 456707 as yet unmatched pairs. 133880 records in RAM.
INFO 2026-06-08 09:19:55 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 2s. Last read position: chr17:48,059,426
INFO 2026-06-08 09:19:55 MarkDuplicates Tracking 455210 as yet unmatched pairs. 132380 records in RAM.
INFO 2026-06-08 09:19:57 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr17:50,185,548
INFO 2026-06-08 09:19:57 MarkDuplicates Tracking 471984 as yet unmatched pairs. 149154 records in RAM.
INFO 2026-06-08 09:19:59 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 2s. Last read position: chr17:50,186,480
INFO 2026-06-08 09:19:59 MarkDuplicates Tracking 471393 as yet unmatched pairs. 148563 records in RAM.
INFO 2026-06-08 09:20:01 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,036
INFO 2026-06-08 09:20:01 MarkDuplicates Tracking 543227 as yet unmatched pairs. 220396 records in RAM.
INFO 2026-06-08 09:20:03 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,882
INFO 2026-06-08 09:20:03 MarkDuplicates Tracking 592628 as yet unmatched pairs. 269796 records in RAM.
INFO 2026-06-08 09:20:05 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,106
INFO 2026-06-08 09:20:05 MarkDuplicates Tracking 604609 as yet unmatched pairs. 281777 records in RAM.
INFO 2026-06-08 09:20:07 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,626
INFO 2026-06-08 09:20:07 MarkDuplicates Tracking 540639 as yet unmatched pairs. 217807 records in RAM.
INFO 2026-06-08 09:20:09 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,974
INFO 2026-06-08 09:20:09 MarkDuplicates Tracking 548751 as yet unmatched pairs. 225918 records in RAM.
INFO 2026-06-08 09:20:11 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,421
INFO 2026-06-08 09:20:11 MarkDuplicates Tracking 530207 as yet unmatched pairs. 207367 records in RAM.
INFO 2026-06-08 09:20:12 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,694
INFO 2026-06-08 09:20:12 MarkDuplicates Tracking 574887 as yet unmatched pairs. 252047 records in RAM.
INFO 2026-06-08 09:20:14 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,041
INFO 2026-06-08 09:20:14 MarkDuplicates Tracking 571179 as yet unmatched pairs. 248339 records in RAM.
INFO 2026-06-08 09:20:16 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,546
INFO 2026-06-08 09:20:16 MarkDuplicates Tracking 523862 as yet unmatched pairs. 201022 records in RAM.
INFO 2026-06-08 09:20:18 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,402
INFO 2026-06-08 09:20:18 MarkDuplicates Tracking 529146 as yet unmatched pairs. 206306 records in RAM.
INFO 2026-06-08 09:20:20 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,863
INFO 2026-06-08 09:20:20 MarkDuplicates Tracking 546482 as yet unmatched pairs. 223642 records in RAM.
INFO 2026-06-08 09:20:22 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,652
INFO 2026-06-08 09:20:22 MarkDuplicates Tracking 530346 as yet unmatched pairs. 207506 records in RAM.
INFO 2026-06-08 09:20:24 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,009
INFO 2026-06-08 09:20:24 MarkDuplicates Tracking 554952 as yet unmatched pairs. 232112 records in RAM.
INFO 2026-06-08 09:20:26 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,007
INFO 2026-06-08 09:20:26 MarkDuplicates Tracking 557972 as yet unmatched pairs. 235132 records in RAM.
INFO 2026-06-08 09:22:31 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 124s. Last read position: chr17:50,194,374
INFO 2026-06-08 09:22:31 MarkDuplicates Tracking 518588 as yet unmatched pairs. 195748 records in RAM.
INFO 2026-06-08 09:22:33 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,720
INFO 2026-06-08 09:22:33 MarkDuplicates Tracking 496254 as yet unmatched pairs. 173414 records in RAM.
INFO 2026-06-08 09:22:35 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,097
INFO 2026-06-08 09:22:35 MarkDuplicates Tracking 494005 as yet unmatched pairs. 171165 records in RAM.
INFO 2026-06-08 09:22:37 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,563
INFO 2026-06-08 09:22:37 MarkDuplicates Tracking 509346 as yet unmatched pairs. 186505 records in RAM.
INFO 2026-06-08 09:22:39 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,950
INFO 2026-06-08 09:22:39 MarkDuplicates Tracking 510468 as yet unmatched pairs. 187627 records in RAM.
INFO 2026-06-08 09:22:41 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,313
INFO 2026-06-08 09:22:41 MarkDuplicates Tracking 539512 as yet unmatched pairs. 216671 records in RAM.
INFO 2026-06-08 09:22:43 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,634
INFO 2026-06-08 09:22:43 MarkDuplicates Tracking 501543 as yet unmatched pairs. 178702 records in RAM.
INFO 2026-06-08 09:22:45 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,208
INFO 2026-06-08 09:22:45 MarkDuplicates Tracking 546348 as yet unmatched pairs. 223487 records in RAM.
INFO 2026-06-08 09:22:47 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,166
INFO 2026-06-08 09:22:47 MarkDuplicates Tracking 449903 as yet unmatched pairs. 127042 records in RAM.
INFO 2026-06-08 09:22:49 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,265
INFO 2026-06-08 09:22:49 MarkDuplicates Tracking 486660 as yet unmatched pairs. 163798 records in RAM.
INFO 2026-06-08 09:22:51 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,794
INFO 2026-06-08 09:22:51 MarkDuplicates Tracking 408901 as yet unmatched pairs. 86030 records in RAM.
INFO 2026-06-08 09:22:52 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,696,960
INFO 2026-06-08 09:22:52 MarkDuplicates Tracking 368065 as yet unmatched pairs. 45194 records in RAM.
INFO 2026-06-08 09:22:54 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:58,491,818
INFO 2026-06-08 09:22:54 MarkDuplicates Tracking 365483 as yet unmatched pairs. 42612 records in RAM.
INFO 2026-06-08 09:22:56 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:59,693,744
INFO 2026-06-08 09:22:56 MarkDuplicates Tracking 363785 as yet unmatched pairs. 40914 records in RAM.
INFO 2026-06-08 09:22:58 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:63,831,371
INFO 2026-06-08 09:22:58 MarkDuplicates Tracking 359988 as yet unmatched pairs. 37117 records in RAM.
INFO 2026-06-08 09:22:59 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:68,043,947
INFO 2026-06-08 09:22:59 MarkDuplicates Tracking 356827 as yet unmatched pairs. 33956 records in RAM.
INFO 2026-06-08 09:23:01 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr17:74,771,848
INFO 2026-06-08 09:23:01 MarkDuplicates Tracking 354060 as yet unmatched pairs. 31188 records in RAM.
INFO 2026-06-08 09:23:02 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr17:75,573,048
INFO 2026-06-08 09:23:02 MarkDuplicates Tracking 352655 as yet unmatched pairs. 29783 records in RAM.
INFO 2026-06-08 09:23:04 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr17:75,978,674
INFO 2026-06-08 09:23:04 MarkDuplicates Tracking 347432 as yet unmatched pairs. 24560 records in RAM.
INFO 2026-06-08 09:23:05 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:78,075,196
INFO 2026-06-08 09:23:05 MarkDuplicates Tracking 343906 as yet unmatched pairs. 21034 records in RAM.
INFO 2026-06-08 09:23:08 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 2s. Last read position: chr17:79,081,038
INFO 2026-06-08 09:23:08 MarkDuplicates Tracking 341051 as yet unmatched pairs. 18173 records in RAM.
INFO 2026-06-08 09:23:10 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:80,347,826
INFO 2026-06-08 09:23:10 MarkDuplicates Tracking 338835 as yet unmatched pairs. 15957 records in RAM.
INFO 2026-06-08 09:23:11 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,263
INFO 2026-06-08 09:23:11 MarkDuplicates Tracking 340344 as yet unmatched pairs. 17454 records in RAM.
INFO 2026-06-08 09:23:14 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 2s. Last read position: chr17:81,847,017
INFO 2026-06-08 09:23:14 MarkDuplicates Tracking 335593 as yet unmatched pairs. 12703 records in RAM.
INFO 2026-06-08 09:23:16 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 2s. Last read position: chr17:82,079,398
INFO 2026-06-08 09:23:16 MarkDuplicates Tracking 329185 as yet unmatched pairs. 6291 records in RAM.
INFO 2026-06-08 09:23:17 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr17:82,265,686
INFO 2026-06-08 09:23:17 MarkDuplicates Tracking 324925 as yet unmatched pairs. 2031 records in RAM.
INFO 2026-06-08 09:23:19 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr18:5,291,562
INFO 2026-06-08 09:23:19 MarkDuplicates Tracking 321731 as yet unmatched pairs. 14081 records in RAM.
INFO 2026-06-08 09:23:20 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr18:21,779,611
INFO 2026-06-08 09:23:20 MarkDuplicates Tracking 319456 as yet unmatched pairs. 11806 records in RAM.
INFO 2026-06-08 09:23:22 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr18:36,026,899
INFO 2026-06-08 09:23:22 MarkDuplicates Tracking 316357 as yet unmatched pairs. 8707 records in RAM.
INFO 2026-06-08 09:23:24 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr18:50,194,775
INFO 2026-06-08 09:23:24 MarkDuplicates Tracking 314210 as yet unmatched pairs. 6560 records in RAM.
INFO 2026-06-08 09:23:25 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr18:62,348,203
INFO 2026-06-08 09:23:25 MarkDuplicates Tracking 310848 as yet unmatched pairs. 3198 records in RAM.
INFO 2026-06-08 09:23:28 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr19:287,679
INFO 2026-06-08 09:23:28 MarkDuplicates Tracking 308966 as yet unmatched pairs. 156224 records in RAM.
INFO 2026-06-08 09:23:30 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:803,561
INFO 2026-06-08 09:23:30 MarkDuplicates Tracking 306993 as yet unmatched pairs. 154245 records in RAM.
INFO 2026-06-08 09:23:31 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:1,112,060
INFO 2026-06-08 09:23:31 MarkDuplicates Tracking 301333 as yet unmatched pairs. 148585 records in RAM.
INFO 2026-06-08 09:23:33 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:1,440,117
INFO 2026-06-08 09:23:33 MarkDuplicates Tracking 306524 as yet unmatched pairs. 153776 records in RAM.
INFO 2026-06-08 09:23:35 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:2,108,744
INFO 2026-06-08 09:23:35 MarkDuplicates Tracking 294154 as yet unmatched pairs. 141400 records in RAM.
INFO 2026-06-08 09:23:36 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:2,916,024
INFO 2026-06-08 09:23:36 MarkDuplicates Tracking 289587 as yet unmatched pairs. 136833 records in RAM.
INFO 2026-06-08 09:23:39 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 2s. Last read position: chr19:3,984,266
INFO 2026-06-08 09:23:39 MarkDuplicates Tracking 288428 as yet unmatched pairs. 135674 records in RAM.
INFO 2026-06-08 09:23:41 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 2s. Last read position: chr19:4,847,841
INFO 2026-06-08 09:23:41 MarkDuplicates Tracking 283110 as yet unmatched pairs. 130356 records in RAM.
INFO 2026-06-08 09:23:43 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:5,844,166
INFO 2026-06-08 09:23:43 MarkDuplicates Tracking 285331 as yet unmatched pairs. 132577 records in RAM.
INFO 2026-06-08 09:23:45 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:6,714,362
INFO 2026-06-08 09:23:45 MarkDuplicates Tracking 278767 as yet unmatched pairs. 126013 records in RAM.
INFO 2026-06-08 09:23:46 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:7,922,491
INFO 2026-06-08 09:23:46 MarkDuplicates Tracking 274365 as yet unmatched pairs. 121611 records in RAM.
INFO 2026-06-08 09:23:48 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:10,115,793
INFO 2026-06-08 09:23:48 MarkDuplicates Tracking 271078 as yet unmatched pairs. 118324 records in RAM.
INFO 2026-06-08 09:23:49 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:10,682,011
INFO 2026-06-08 09:23:49 MarkDuplicates Tracking 268979 as yet unmatched pairs. 116225 records in RAM.
INFO 2026-06-08 09:23:51 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:11,199,306
INFO 2026-06-08 09:23:51 MarkDuplicates Tracking 264346 as yet unmatched pairs. 111592 records in RAM.
INFO 2026-06-08 09:23:53 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:12,705,508
INFO 2026-06-08 09:23:53 MarkDuplicates Tracking 262098 as yet unmatched pairs. 109344 records in RAM.
INFO 2026-06-08 09:23:54 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr19:13,137,310
INFO 2026-06-08 09:23:54 MarkDuplicates Tracking 258508 as yet unmatched pairs. 105754 records in RAM.
INFO 2026-06-08 09:23:56 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:14,412,582
INFO 2026-06-08 09:23:56 MarkDuplicates Tracking 255303 as yet unmatched pairs. 102549 records in RAM.
INFO 2026-06-08 09:23:57 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:15,122,998
INFO 2026-06-08 09:23:57 MarkDuplicates Tracking 252973 as yet unmatched pairs. 100219 records in RAM.
INFO 2026-06-08 09:23:59 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:15,401,014
INFO 2026-06-08 09:23:59 MarkDuplicates Tracking 248523 as yet unmatched pairs. 95769 records in RAM.
INFO 2026-06-08 09:24:00 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:17,235,669
INFO 2026-06-08 09:24:00 MarkDuplicates Tracking 245949 as yet unmatched pairs. 93190 records in RAM.
INFO 2026-06-08 09:24:02 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:18,009,032
INFO 2026-06-08 09:24:02 MarkDuplicates Tracking 241796 as yet unmatched pairs. 89036 records in RAM.
INFO 2026-06-08 09:24:04 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:18,574,947
INFO 2026-06-08 09:24:04 MarkDuplicates Tracking 241020 as yet unmatched pairs. 88260 records in RAM.
INFO 2026-06-08 09:24:06 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 2s. Last read position: chr19:19,645,720
INFO 2026-06-08 09:24:06 MarkDuplicates Tracking 235171 as yet unmatched pairs. 82410 records in RAM.
INFO 2026-06-08 09:24:08 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 2s. Last read position: chr19:34,396,598
INFO 2026-06-08 09:24:08 MarkDuplicates Tracking 233916 as yet unmatched pairs. 81155 records in RAM.
INFO 2026-06-08 09:24:10 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:35,654,589
INFO 2026-06-08 09:24:10 MarkDuplicates Tracking 230869 as yet unmatched pairs. 78102 records in RAM.
INFO 2026-06-08 09:24:12 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:38,182,548
INFO 2026-06-08 09:24:12 MarkDuplicates Tracking 225792 as yet unmatched pairs. 73024 records in RAM.
INFO 2026-06-08 09:24:13 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:38,812,374
INFO 2026-06-08 09:24:13 MarkDuplicates Tracking 223077 as yet unmatched pairs. 70309 records in RAM.
INFO 2026-06-08 09:24:15 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,545
INFO 2026-06-08 09:24:15 MarkDuplicates Tracking 225732 as yet unmatched pairs. 72964 records in RAM.
INFO 2026-06-08 09:24:16 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:39,876,756
INFO 2026-06-08 09:24:16 MarkDuplicates Tracking 216682 as yet unmatched pairs. 63914 records in RAM.
INFO 2026-06-08 09:24:18 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:39,889,533
INFO 2026-06-08 09:24:18 MarkDuplicates Tracking 220619 as yet unmatched pairs. 67851 records in RAM.
INFO 2026-06-08 09:24:19 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:39,894,091
INFO 2026-06-08 09:24:19 MarkDuplicates Tracking 220974 as yet unmatched pairs. 68206 records in RAM.
INFO 2026-06-08 09:24:21 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:39,918,072
INFO 2026-06-08 09:24:21 MarkDuplicates Tracking 214372 as yet unmatched pairs. 61604 records in RAM.
INFO 2026-06-08 09:24:22 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:40,465,611
INFO 2026-06-08 09:24:22 MarkDuplicates Tracking 206100 as yet unmatched pairs. 53332 records in RAM.
INFO 2026-06-08 09:24:24 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:41,710,001
INFO 2026-06-08 09:24:24 MarkDuplicates Tracking 204605 as yet unmatched pairs. 51837 records in RAM.
INFO 2026-06-08 09:24:26 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:41,999,156
INFO 2026-06-08 09:24:26 MarkDuplicates Tracking 200214 as yet unmatched pairs. 47446 records in RAM.
INFO 2026-06-08 09:24:27 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:42,294,868
INFO 2026-06-08 09:24:27 MarkDuplicates Tracking 198325 as yet unmatched pairs. 45557 records in RAM.
INFO 2026-06-08 09:24:28 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr19:44,777,966
INFO 2026-06-08 09:24:28 MarkDuplicates Tracking 194801 as yet unmatched pairs. 42031 records in RAM.
INFO 2026-06-08 09:24:30 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:45,470,827
INFO 2026-06-08 09:24:30 MarkDuplicates Tracking 190424 as yet unmatched pairs. 37654 records in RAM.
INFO 2026-06-08 09:24:32 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:46,678,651
INFO 2026-06-08 09:24:32 MarkDuplicates Tracking 186883 as yet unmatched pairs. 34113 records in RAM.
INFO 2026-06-08 09:24:34 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 2s. Last read position: chr19:47,754,777
INFO 2026-06-08 09:24:34 MarkDuplicates Tracking 183598 as yet unmatched pairs. 30828 records in RAM.
INFO 2026-06-08 09:24:36 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:48,629,426
INFO 2026-06-08 09:24:36 MarkDuplicates Tracking 181009 as yet unmatched pairs. 28239 records in RAM.
INFO 2026-06-08 09:24:38 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:49,200,753
INFO 2026-06-08 09:24:38 MarkDuplicates Tracking 178674 as yet unmatched pairs. 25894 records in RAM.
INFO 2026-06-08 09:24:39 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:49,597,754
INFO 2026-06-08 09:24:39 MarkDuplicates Tracking 174761 as yet unmatched pairs. 21981 records in RAM.
INFO 2026-06-08 09:24:41 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr19:49,930,813
INFO 2026-06-08 09:24:41 MarkDuplicates Tracking 171049 as yet unmatched pairs. 18268 records in RAM.
INFO 2026-06-08 09:24:42 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:52,065,944
INFO 2026-06-08 09:24:42 MarkDuplicates Tracking 168722 as yet unmatched pairs. 15941 records in RAM.
INFO 2026-06-08 09:24:44 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:54,201,198
INFO 2026-06-08 09:24:44 MarkDuplicates Tracking 169235 as yet unmatched pairs. 16451 records in RAM.
INFO 2026-06-08 09:24:46 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr19:55,207,088
INFO 2026-06-08 09:24:46 MarkDuplicates Tracking 161087 as yet unmatched pairs. 8303 records in RAM.
INFO 2026-06-08 09:24:47 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:55,677,080
INFO 2026-06-08 09:24:47 MarkDuplicates Tracking 158119 as yet unmatched pairs. 5335 records in RAM.
INFO 2026-06-08 09:24:49 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:58,394,497
INFO 2026-06-08 09:24:49 MarkDuplicates Tracking 158359 as yet unmatched pairs. 5575 records in RAM.
INFO 2026-06-08 09:24:50 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr20:1,570,966
INFO 2026-06-08 09:24:50 MarkDuplicates Tracking 150989 as yet unmatched pairs. 37325 records in RAM.
INFO 2026-06-08 09:24:52 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr20:4,182,475
INFO 2026-06-08 09:24:52 MarkDuplicates Tracking 148149 as yet unmatched pairs. 34485 records in RAM.
INFO 2026-06-08 09:24:54 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr20:17,659,063
INFO 2026-06-08 09:24:54 MarkDuplicates Tracking 144723 as yet unmatched pairs. 31059 records in RAM.
INFO 2026-06-08 09:24:55 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr20:25,195,764
INFO 2026-06-08 09:24:55 MarkDuplicates Tracking 142629 as yet unmatched pairs. 28960 records in RAM.
INFO 2026-06-08 09:24:57 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr20:33,490,199
INFO 2026-06-08 09:24:57 MarkDuplicates Tracking 138980 as yet unmatched pairs. 25310 records in RAM.
INFO 2026-06-08 09:24:59 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr20:35,626,335
INFO 2026-06-08 09:24:59 MarkDuplicates Tracking 136638 as yet unmatched pairs. 22968 records in RAM.
INFO 2026-06-08 09:25:01 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr20:38,048,388
INFO 2026-06-08 09:25:01 MarkDuplicates Tracking 133338 as yet unmatched pairs. 19667 records in RAM.
INFO 2026-06-08 09:25:03 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 2s. Last read position: chr20:45,327,319
INFO 2026-06-08 09:25:03 MarkDuplicates Tracking 134492 as yet unmatched pairs. 20820 records in RAM.
INFO 2026-06-08 09:25:05 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr20:48,921,922
INFO 2026-06-08 09:25:05 MarkDuplicates Tracking 128306 as yet unmatched pairs. 14634 records in RAM.
INFO 2026-06-08 09:25:06 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr20:56,383,082
INFO 2026-06-08 09:25:06 MarkDuplicates Tracking 125008 as yet unmatched pairs. 11336 records in RAM.
INFO 2026-06-08 09:25:08 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr20:62,310,748
INFO 2026-06-08 09:25:08 MarkDuplicates Tracking 122939 as yet unmatched pairs. 9266 records in RAM.
INFO 2026-06-08 09:25:09 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr20:62,957,455
INFO 2026-06-08 09:25:09 MarkDuplicates Tracking 119126 as yet unmatched pairs. 5450 records in RAM.
INFO 2026-06-08 09:25:11 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 2s. Last read position: chr20:63,775,706
INFO 2026-06-08 09:25:11 MarkDuplicates Tracking 114648 as yet unmatched pairs. 968 records in RAM.
INFO 2026-06-08 09:25:13 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,253,637
INFO 2026-06-08 09:25:13 MarkDuplicates Tracking 112345 as yet unmatched pairs. 23664 records in RAM.
INFO 2026-06-08 09:25:14 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,607
INFO 2026-06-08 09:25:14 MarkDuplicates Tracking 110489 as yet unmatched pairs. 21807 records in RAM.
INFO 2026-06-08 09:25:15 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr21:31,701,025
INFO 2026-06-08 09:25:15 MarkDuplicates Tracking 108230 as yet unmatched pairs. 19548 records in RAM.
INFO 2026-06-08 09:25:17 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr21:36,230,785
INFO 2026-06-08 09:25:17 MarkDuplicates Tracking 105052 as yet unmatched pairs. 16365 records in RAM.
INFO 2026-06-08 09:25:19 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr21:41,468,400
INFO 2026-06-08 09:25:19 MarkDuplicates Tracking 103804 as yet unmatched pairs. 15117 records in RAM.
INFO 2026-06-08 09:25:20 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr21:42,686,223
INFO 2026-06-08 09:25:20 MarkDuplicates Tracking 98723 as yet unmatched pairs. 10036 records in RAM.
INFO 2026-06-08 09:25:22 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr21:44,890,107
INFO 2026-06-08 09:25:22 MarkDuplicates Tracking 96265 as yet unmatched pairs. 7578 records in RAM.
INFO 2026-06-08 09:25:24 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr21:46,111,535
INFO 2026-06-08 09:25:24 MarkDuplicates Tracking 93562 as yet unmatched pairs. 4874 records in RAM.
INFO 2026-06-08 09:25:25 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr21:46,648,605
INFO 2026-06-08 09:25:25 MarkDuplicates Tracking 89234 as yet unmatched pairs. 545 records in RAM.
INFO 2026-06-08 09:25:27 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 2s. Last read position: chr22:20,116,514
INFO 2026-06-08 09:25:27 MarkDuplicates Tracking 86095 as yet unmatched pairs. 44818 records in RAM.
INFO 2026-06-08 09:25:29 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 2s. Last read position: chr22:23,180,985
INFO 2026-06-08 09:25:29 MarkDuplicates Tracking 86274 as yet unmatched pairs. 44997 records in RAM.
INFO 2026-06-08 09:25:31 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr22:24,064,061
INFO 2026-06-08 09:25:31 MarkDuplicates Tracking 79840 as yet unmatched pairs. 38563 records in RAM.
INFO 2026-06-08 09:25:33 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 2s. Last read position: chr22:29,138,704
INFO 2026-06-08 09:25:33 MarkDuplicates Tracking 76275 as yet unmatched pairs. 34998 records in RAM.
INFO 2026-06-08 09:25:35 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr22:30,243,874
INFO 2026-06-08 09:25:35 MarkDuplicates Tracking 74568 as yet unmatched pairs. 33291 records in RAM.
INFO 2026-06-08 09:25:36 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr22:31,944,773
INFO 2026-06-08 09:25:36 MarkDuplicates Tracking 71590 as yet unmatched pairs. 30313 records in RAM.
INFO 2026-06-08 09:25:38 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr22:36,301,655
INFO 2026-06-08 09:25:38 MarkDuplicates Tracking 69141 as yet unmatched pairs. 27864 records in RAM.
INFO 2026-06-08 09:25:39 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr22:37,568,694
INFO 2026-06-08 09:25:39 MarkDuplicates Tracking 65951 as yet unmatched pairs. 24674 records in RAM.
INFO 2026-06-08 09:25:41 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr22:38,488,024
INFO 2026-06-08 09:25:41 MarkDuplicates Tracking 62732 as yet unmatched pairs. 21455 records in RAM.
INFO 2026-06-08 09:25:42 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr22:40,405,082
INFO 2026-06-08 09:25:42 MarkDuplicates Tracking 58792 as yet unmatched pairs. 17515 records in RAM.
INFO 2026-06-08 09:25:44 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr22:41,866,917
INFO 2026-06-08 09:25:44 MarkDuplicates Tracking 56320 as yet unmatched pairs. 15041 records in RAM.
INFO 2026-06-08 09:25:46 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr22:44,024,412
INFO 2026-06-08 09:25:46 MarkDuplicates Tracking 53092 as yet unmatched pairs. 11813 records in RAM.
INFO 2026-06-08 09:25:47 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr22:49,923,237
INFO 2026-06-08 09:25:47 MarkDuplicates Tracking 49843 as yet unmatched pairs. 8564 records in RAM.
INFO 2026-06-08 09:25:49 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr22:50,289,968
INFO 2026-06-08 09:25:49 MarkDuplicates Tracking 48807 as yet unmatched pairs. 7521 records in RAM.
INFO 2026-06-08 09:25:50 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr22:50,704,846
INFO 2026-06-08 09:25:50 MarkDuplicates Tracking 41974 as yet unmatched pairs. 688 records in RAM.
INFO 2026-06-08 09:25:52 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chrX:3,867,392
INFO 2026-06-08 09:25:52 MarkDuplicates Tracking 38673 as yet unmatched pairs. 35715 records in RAM.
INFO 2026-06-08 09:25:54 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chrX:23,076,113
INFO 2026-06-08 09:25:54 MarkDuplicates Tracking 35703 as yet unmatched pairs. 32745 records in RAM.
INFO 2026-06-08 09:25:56 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chrX:40,935,696
INFO 2026-06-08 09:25:56 MarkDuplicates Tracking 33070 as yet unmatched pairs. 30112 records in RAM.
INFO 2026-06-08 09:25:58 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chrX:47,214,563
INFO 2026-06-08 09:25:58 MarkDuplicates Tracking 32203 as yet unmatched pairs. 29245 records in RAM.
INFO 2026-06-08 09:25:59 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chrX:49,030,133
INFO 2026-06-08 09:25:59 MarkDuplicates Tracking 28441 as yet unmatched pairs. 25483 records in RAM.
INFO 2026-06-08 09:26:01 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chrX:53,412,126
INFO 2026-06-08 09:26:01 MarkDuplicates Tracking 24914 as yet unmatched pairs. 21956 records in RAM.
INFO 2026-06-08 09:26:02 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chrX:66,188,432
INFO 2026-06-08 09:26:02 MarkDuplicates Tracking 23669 as yet unmatched pairs. 20711 records in RAM.
INFO 2026-06-08 09:26:04 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chrX:71,557,549
INFO 2026-06-08 09:26:04 MarkDuplicates Tracking 20850 as yet unmatched pairs. 17892 records in RAM.
INFO 2026-06-08 09:26:05 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:78,138,850
INFO 2026-06-08 09:26:05 MarkDuplicates Tracking 16827 as yet unmatched pairs. 13869 records in RAM.
INFO 2026-06-08 09:26:07 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chrX:115,610,299
INFO 2026-06-08 09:26:07 MarkDuplicates Tracking 14873 as yet unmatched pairs. 11915 records in RAM.
INFO 2026-06-08 09:26:08 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chrX:130,350,658
INFO 2026-06-08 09:26:08 MarkDuplicates Tracking 11841 as yet unmatched pairs. 8883 records in RAM.
INFO 2026-06-08 09:26:10 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chrX:153,794,741
INFO 2026-06-08 09:26:10 MarkDuplicates Tracking 11919 as yet unmatched pairs. 8961 records in RAM.
INFO 2026-06-08 09:26:12 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chrX:154,360,284
INFO 2026-06-08 09:26:12 MarkDuplicates Tracking 7458 as yet unmatched pairs. 4500 records in RAM.
INFO 2026-06-08 09:26:13 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chrX:155,457,685
INFO 2026-06-08 09:26:13 MarkDuplicates Tracking 3015 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 09:26:14 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,434
INFO 2026-06-08 09:26:14 MarkDuplicates Tracking 1867 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 09:26:15 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: KI270733.1:170,167
INFO 2026-06-08 09:26:15 MarkDuplicates Tracking 667 as yet unmatched pairs. 454 records in RAM.
INFO 2026-06-08 09:26:16 MarkDuplicates Read 631510624 records. 0 pairs never matched.
INFO 2026-06-08 09:27:06 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141656; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:27:06 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:27:10 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:27:10 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:28:35 OpticalDuplicateFinder Large duplicate set. size = 1120
INFO 2026-06-08 09:28:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,461
INFO 2026-06-08 09:28:35 OpticalDuplicateFinder Large duplicate set. size = 1326
INFO 2026-06-08 09:28:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,651
INFO 2026-06-08 09:28:35 OpticalDuplicateFinder Large duplicate set. size = 1292
INFO 2026-06-08 09:28:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,790
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,902
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,841
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,773
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder Large duplicate set. size = 1601
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,586
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder Large duplicate set. size = 1214
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,769
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,990
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,646
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,213
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,401
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,630
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder Large duplicate set. size = 1388
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,939
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder Large duplicate set. size = 1125
INFO 2026-06-08 09:28:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,897
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,265
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,622
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,117
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder Large duplicate set. size = 1363
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,330
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder Large duplicate set. size = 1927
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,366
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,773
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder Large duplicate set. size = 1863
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,911
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder Large duplicate set. size = 1263
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,731
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,817
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder Large duplicate set. size = 1182
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,246
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,829
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 09:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,472
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1892
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,938
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1399
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,279
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1623
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,037
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,606
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1192
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,555
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1392
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,113
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1171
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,347
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1344
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,302
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,756
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1381
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,496
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,383
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,275
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,861
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1125
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,822
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1608
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,457
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1787
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,860
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,250
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 2476
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,372
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,852
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1338
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,480
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,470
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 09:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,745
INFO 2026-06-08 09:28:39 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 09:28:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,476
INFO 2026-06-08 09:28:39 OpticalDuplicateFinder Large duplicate set. size = 1626
INFO 2026-06-08 09:28:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,631
INFO 2026-06-08 09:28:39 OpticalDuplicateFinder Large duplicate set. size = 1379
INFO 2026-06-08 09:28:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,189
INFO 2026-06-08 09:28:39 OpticalDuplicateFinder Large duplicate set. size = 1867
INFO 2026-06-08 09:28:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,136
INFO 2026-06-08 09:28:39 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:28:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,840
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,454
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1311
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,217
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,361
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,586
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1661
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,898
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 2613
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,068
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,914
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1385
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,335
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 2014
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,264
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,566
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,458
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1383
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,289
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,136
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1585
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,541
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,087
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1187
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,061
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1230
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,313
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1823
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,060
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 09:28:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,003
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,257
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1330
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,328
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1356
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,701
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,055
INFO 2026-06-08 09:28:58 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:28:59 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:30:05 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:30:14 MarkDuplicates After generateDuplicateIndexes freeMemory: 203917464; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:30:14 MarkDuplicates Marking 435220681 records as duplicates.
INFO 2026-06-08 09:30:14 MarkDuplicates Found 16490867 optical duplicate clusters.
INFO 2026-06-08 09:30:14 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:30:33 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:22,639,477
INFO 2026-06-08 09:30:51 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:37s. Time for last 10,000,000: 18s. Last read position: chr1:46,032,663
INFO 2026-06-08 09:31:10 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:55s. Time for last 10,000,000: 18s. Last read position: chr1:146,156,501
INFO 2026-06-08 09:31:29 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:14s. Time for last 10,000,000: 18s. Last read position: chr1:156,729,084
INFO 2026-06-08 09:31:47 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:33s. Time for last 10,000,000: 18s. Last read position: chr1:209,792,281
INFO 2026-06-08 09:32:06 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:51s. Time for last 10,000,000: 18s. Last read position: chr2:32,916,255
INFO 2026-06-08 09:32:24 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:09s. Time for last 10,000,000: 18s. Last read position: chr2:69,893,995
INFO 2026-06-08 09:32:42 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:28s. Time for last 10,000,000: 18s. Last read position: chr2:127,635,749
INFO 2026-06-08 09:33:01 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:47s. Time for last 10,000,000: 18s. Last read position: chr2:215,361,514
INFO 2026-06-08 09:33:20 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:05s. Time for last 10,000,000: 18s. Last read position: chr2:219,451,177
INFO 2026-06-08 09:33:38 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:24s. Time for last 10,000,000: 18s. Last read position: chr3:39,412,285
INFO 2026-06-08 09:33:57 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:42s. Time for last 10,000,000: 18s. Last read position: chr3:70,977,966
INFO 2026-06-08 09:34:15 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:04:01s. Time for last 10,000,000: 18s. Last read position: chr3:184,832,715
INFO 2026-06-08 09:34:34 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:19s. Time for last 10,000,000: 18s. Last read position: chr4:40,816,175
INFO 2026-06-08 09:34:52 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 18s. Last read position: chr5:840,445
INFO 2026-06-08 09:35:11 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:56s. Time for last 10,000,000: 18s. Last read position: chr5:134,672,023
INFO 2026-06-08 09:35:29 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:14s. Time for last 10,000,000: 18s. Last read position: chr5:171,392,738
INFO 2026-06-08 09:35:47 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:32s. Time for last 10,000,000: 18s. Last read position: chr6:27,814,521
INFO 2026-06-08 09:36:05 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:50s. Time for last 10,000,000: 17s. Last read position: chr6:33,455,835
INFO 2026-06-08 09:36:23 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:06:08s. Time for last 10,000,000: 18s. Last read position: chr6:130,869,819
INFO 2026-06-08 09:36:41 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:26s. Time for last 10,000,000: 17s. Last read position: chr7:6,801,379
INFO 2026-06-08 09:36:58 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:44s. Time for last 10,000,000: 17s. Last read position: chr7:94,401,576
INFO 2026-06-08 09:37:16 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:07:02s. Time for last 10,000,000: 17s. Last read position: chr7:127,990,993
INFO 2026-06-08 09:37:34 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:20s. Time for last 10,000,000: 18s. Last read position: chr8:29,118,963
INFO 2026-06-08 09:37:52 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:37s. Time for last 10,000,000: 17s. Last read position: chr8:143,020,948
INFO 2026-06-08 09:38:09 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:54s. Time for last 10,000,000: 16s. Last read position: chr8:144,501,630
INFO 2026-06-08 09:38:27 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:12s. Time for last 10,000,000: 17s. Last read position: chr9:110,136,500
INFO 2026-06-08 09:38:44 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:30s. Time for last 10,000,000: 17s. Last read position: chr9:136,464,452
INFO 2026-06-08 09:39:02 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:47s. Time for last 10,000,000: 17s. Last read position: chr10:72,223,893
INFO 2026-06-08 09:39:19 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:09:05s. Time for last 10,000,000: 17s. Last read position: chr10:121,479,618
INFO 2026-06-08 09:39:37 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:22s. Time for last 10,000,000: 17s. Last read position: chr11:1,074,895
INFO 2026-06-08 09:39:54 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 17s. Last read position: chr11:6,601,591
INFO 2026-06-08 09:40:11 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:57s. Time for last 10,000,000: 17s. Last read position: chr11:62,627,111
INFO 2026-06-08 09:40:29 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:14s. Time for last 10,000,000: 17s. Last read position: chr11:73,394,522
INFO 2026-06-08 09:40:47 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:32s. Time for last 10,000,000: 17s. Last read position: chr12:6,354,508
INFO 2026-06-08 09:41:05 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:50s. Time for last 10,000,000: 17s. Last read position: chr12:52,949,502
INFO 2026-06-08 09:41:22 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:08s. Time for last 10,000,000: 17s. Last read position: chr12:98,537,484
INFO 2026-06-08 09:41:40 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 17s. Last read position: chr12:125,129,345
INFO 2026-06-08 09:41:58 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 17s. Last read position: chr14:20,457,049
INFO 2026-06-08 09:42:15 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:12:01s. Time for last 10,000,000: 17s. Last read position: chr14:77,557,046
INFO 2026-06-08 09:42:33 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:18s. Time for last 10,000,000: 17s. Last read position: chr15:29,708,668
INFO 2026-06-08 09:42:51 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:36s. Time for last 10,000,000: 17s. Last read position: chr15:72,199,578
INFO 2026-06-08 09:43:08 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:54s. Time for last 10,000,000: 17s. Last read position: chr16:2,118,344
INFO 2026-06-08 09:43:26 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:11s. Time for last 10,000,000: 17s. Last read position: chr16:21,837,451
INFO 2026-06-08 09:43:43 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:29s. Time for last 10,000,000: 17s. Last read position: chr16:56,868,346
INFO 2026-06-08 09:44:01 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:46s. Time for last 10,000,000: 17s. Last read position: chr17:1,361,285
INFO 2026-06-08 09:44:18 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:04s. Time for last 10,000,000: 17s. Last read position: chr17:27,788,891
INFO 2026-06-08 09:44:36 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:21s. Time for last 10,000,000: 17s. Last read position: chr17:44,351,678
INFO 2026-06-08 09:44:54 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:39s. Time for last 10,000,000: 17s. Last read position: chr17:50,189,421
INFO 2026-06-08 09:45:11 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:56s. Time for last 10,000,000: 17s. Last read position: chr17:50,194,720
INFO 2026-06-08 09:45:28 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:14s. Time for last 10,000,000: 17s. Last read position: chr17:50,696,960
INFO 2026-06-08 09:45:47 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:33s. Time for last 10,000,000: 18s. Last read position: chr17:80,347,826
INFO 2026-06-08 09:46:05 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:50s. Time for last 10,000,000: 17s. Last read position: chr19:287,679
INFO 2026-06-08 09:46:22 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:16:08s. Time for last 10,000,000: 17s. Last read position: chr19:7,922,491
INFO 2026-06-08 09:46:41 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:26s. Time for last 10,000,000: 18s. Last read position: chr19:18,009,032
INFO 2026-06-08 09:46:59 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:44s. Time for last 10,000,000: 18s. Last read position: chr19:39,894,091
INFO 2026-06-08 09:47:18 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:17:03s. Time for last 10,000,000: 18s. Last read position: chr19:48,629,426
INFO 2026-06-08 09:47:37 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:23s. Time for last 10,000,000: 19s. Last read position: chr20:4,182,475
INFO 2026-06-08 09:47:56 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:42s. Time for last 10,000,000: 18s. Last read position: chr20:62,957,455
INFO 2026-06-08 09:48:15 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:18:01s. Time for last 10,000,000: 18s. Last read position: chr21:46,648,605
INFO 2026-06-08 09:48:36 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:18:21s. Time for last 10,000,000: 20s. Last read position: chr22:40,405,082
INFO 2026-06-08 09:48:54 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:40s. Time for last 10,000,000: 18s. Last read position: chrX:49,030,133
INFO 2026-06-08 09:49:13 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:58s. Time for last 10,000,000: 18s. Last read position: GL000220.1:159,434
INFO 2026-06-08 09:49:27 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:49:27 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:49:27 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:49:27 MarkDuplicates Before output close freeMemory: 203893576; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:49:27 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:49:28 MarkDuplicates After output close freeMemory: 104125576; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:49:28 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 44.86 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory