[W::hts_idx_load3] The index file is older than the data file: 659_bua-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

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Total splicing  Events:	371067125
Known Splicing Events:	368198060
Partial Novel Splicing Events:	1728452
Novel Splicing Events:	955429
Filtered Splicing Events:	185184

Total splicing  Junctions:	519655
Known Splicing Junctions:	263102
Partial Novel Splicing Junctions:	139139
Novel Splicing Junctions:	117414

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Create BED file ...
Create Interact file ...