File Info

Filename
run_level_intermediate.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/cd217e332c212c5c1ea54537e3bcb3/run_level_intermediate.tsv
Size
2.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:RUN_LEVEL_INTERMEDIATE (run_level_qc)
Attempt

Content

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SAMPLE_ID SOURCE_QC ANALYTE PIPELINE_VERSION QC_METRIC VALUE METRIC_ORIGIN
RUN RNA rnafusion_3.0.2-gunknown CLUSTER_DENSITY 9457.29 bclconvert
RUN RNA rnafusion_3.0.2-gunknown READS_PASSING_FILTER_PERCENT 77.019 bclconvert
RUN RNA rnafusion_3.0.2-gunknown Q30_RUN_WIDE_PERCENT 94.2469 bclconvert
RUN RNA rnafusion_3.0.2-gunknown OCCUPANCY_RATE 90.8136 bclconvert
RUN RNA rnafusion_3.0.2-gunknown YIELD_IN_GB 9488.483283338 bclconvert
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS 260031131 bclconvert
NTC_0001_0001_A23MVY2LT4_1 NTC RNA rnafusion_3.0.2-gunknown READS 33914 bclconvert
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 512573856.0 seqtools
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.943123 seqtools
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.975739 seqtools
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.047892 seqtools
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.024261 seqtools
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 295440108.0 seqtools
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 150143084.0 seqtools
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 15002380.0 seqtools
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 3733130.0 seqtools
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 246247376.0 star
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.005491 star
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 169.0 kallisto
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.018 kallisto
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 4.967 kallisto
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 62.22 contamination
NTC_0001_0001_A23MVY2LT4_1 NTC RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 1682.0 seqtools
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_ALL_RNA_FUSIONS 72 fusion
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_TRUE_RNA_FUSIONS 0 fusion
FFPE_HD789_01_RNA_13_A23MVY2LT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_FALSE_RNA_FUSIONS 72 fusion
28 rows