File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/2c6e1e346b76a5fc2a954c1395970d/.command.log
Size
3.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bCu-T1-TRNA-1_A23MVY2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/1f6ea047fd7974a42970975c69ab61/659_bCu-T1-TRNA-1_A23MVY2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/2c6e1e346b76a5fc2a954c1395970d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/e3ec41a7229b7e5826f444512841ea/659_bCu-T1-TRNA-1_A23MVY2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/2c6e1e346b76a5fc2a954c1395970d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TNS1--ALK
starfusion
arriba
NAV2--NELL1
starfusion
arriba
TRPC2--WEE1
starfusion
arriba
IRAG1--ZNF143
starfusion
arriba
PPFIBP2--PARVA
starfusion
arriba
RHOG--SBF2
starfusion
arriba
ADAM23--HDAC4
starfusion
arriba
NELL1--INSC
arriba
HDAC4--HDAC4
arriba
SBF2--AC087379.1
arriba
SBF2--AC009869.1
arriba
BMS1P23--AFF3
arriba
AL845331.2--AFF3
arriba
ZNF143--LINC02751
arriba
HDAC4--KCNS3
arriba

  0%|          | 0/15 [00:00<?, ?it/s]
Processing TNS1--ALK:   0%|          | 0/15 [00:00<?, ?it/s]
Processing TNS1--ALK:   7%|▋         | 1/15 [00:00<00:01,  9.08it/s]
Processing NAV2--NELL1:   7%|▋         | 1/15 [00:00<00:01,  9.08it/s]
Processing NAV2--NELL1:  13%|█▎        | 2/15 [00:00<00:01,  9.35it/s]
Processing TRPC2--WEE1:  13%|█▎        | 2/15 [00:00<00:01,  9.35it/s]
Processing TRPC2--WEE1:  20%|██        | 3/15 [00:00<00:01,  9.44it/s]
Processing IRAG1--ZNF143:  20%|██        | 3/15 [00:00<00:01,  9.44it/s]
Processing IRAG1--ZNF143:  27%|██▋       | 4/15 [00:00<00:01,  9.47it/s]
Processing PPFIBP2--PARVA:  27%|██▋       | 4/15 [00:00<00:01,  9.47it/s]
Processing PPFIBP2--PARVA:  33%|███▎      | 5/15 [00:00<00:01,  9.49it/s]
Processing RHOG--SBF2:  33%|███▎      | 5/15 [00:00<00:01,  9.49it/s]    
Processing RHOG--SBF2:  40%|████      | 6/15 [00:00<00:00,  9.52it/s]
Processing ADAM23--HDAC4:  40%|████      | 6/15 [00:00<00:00,  9.52it/s]
Processing ADAM23--HDAC4:  47%|████▋     | 7/15 [00:00<00:00,  9.54it/s]
Processing NELL1--INSC:  47%|████▋     | 7/15 [00:00<00:00,  9.54it/s]  
Processing NELL1--INSC:  53%|█████▎    | 8/15 [00:00<00:00,  9.52it/s]
Processing HDAC4--HDAC4:  53%|█████▎    | 8/15 [00:00<00:00,  9.52it/s]
Processing HDAC4--HDAC4:  60%|██████    | 9/15 [00:00<00:00,  9.52it/s]
Processing SBF2--AC087379.1:  60%|██████    | 9/15 [00:00<00:00,  9.52it/s]
Processing SBF2--AC087379.1:  67%|██████▋   | 10/15 [00:01<00:00,  9.53it/s]
Processing SBF2--AC009869.1:  67%|██████▋   | 10/15 [00:01<00:00,  9.53it/s]
Processing SBF2--AC009869.1:  73%|███████▎  | 11/15 [00:01<00:00,  9.54it/s]
Processing BMS1P23--AFF3:  73%|███████▎  | 11/15 [00:01<00:00,  9.54it/s]   
Processing BMS1P23--AFF3:  80%|████████  | 12/15 [00:01<00:00,  9.56it/s]
Processing AL845331.2--AFF3:  80%|████████  | 12/15 [00:01<00:00,  9.56it/s]
Processing AL845331.2--AFF3:  87%|████████▋ | 13/15 [00:01<00:00,  9.57it/s]
Processing ZNF143--LINC02751:  87%|████████▋ | 13/15 [00:01<00:00,  9.57it/s]
Processing ZNF143--LINC02751:  93%|█████████▎| 14/15 [00:01<00:00,  9.58it/s]
Processing HDAC4--KCNS3:  93%|█████████▎| 14/15 [00:01<00:00,  9.58it/s]     
Processing HDAC4--KCNS3: 100%|██████████| 15/15 [00:01<00:00,  9.57it/s]
Processing HDAC4--KCNS3: 100%|██████████| 15/15 [00:01<00:00,  9.52it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory