Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/6f584db2bae4ae8475231005027719/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/6f584db2bae4ae8475231005027719/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/a922198b16c39e27d87a0cd555fd0a/659_bhK-T1-TRNA-1_A23MVY2LT4_2
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/3b788d3735e50fa988db2b6e977beb/659_bhK-T1-TRNA-1_A23MVY2LT4_2.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_bhK-T1-TRNA-1_A23MVY2LT4_2/abundance.h5
Successfully converted 659_bhK-T1-TRNA-1_A23MVY2LT4_2/abundance.h5 to 659_bhK-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv
  Sample: 659_bhK-T1-TRNA-1_A23MVY2LT4_2
  Mean Fragment Length: 174.6 bp
  Median Fragment Length: 160.0 bp
  pct_mito_est_counts: 0.003%
  pct_ribo_est_counts: 0.613%
  pct_hk_est_counts: 0.361%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.007%
  pct_ribo_tpm: 2.32%
  pct_hk_tpm: 0.633%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.059%