Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/07c965b2a0c1f2059049f0ac29d954/659_bhK-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/dfea8092ca59d5e6e90122e6298c87/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/dfea8092ca59d5e6e90122e6298c87/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/0c2dc0b8f97e7aadba6132e4e248d6/659_bhK-T1-TRNA-1_A23MVY2LT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
CCDC6--RET
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
DNAJC1--C10orf143
starfusion
arriba
PRSS27--TPSB2
starfusion
NEBL--CDK1
starfusion
arriba
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
AC092807.3--DDAH1
arriba
TLK2--FAM157A
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
CRYZL2P--SEC16B
arriba
KLRC4--KLRK1
arriba
0%| | 0/18 [00:00<?, ?it/s]
Processing CCDC6--RET: 0%| | 0/18 [00:00<?, ?it/s]
Processing CCDC6--RET: 6%|▌ | 1/18 [00:00<00:01, 9.25it/s]
Processing TLK2--AC240565.1: 6%|▌ | 1/18 [00:00<00:01, 9.25it/s]
Processing TLK2--AC240565.1: 11%|█ | 2/18 [00:00<00:01, 9.48it/s]
Processing TLK2P1--AC110079.1: 11%|█ | 2/18 [00:00<00:01, 9.48it/s]
Processing TLK2P1--AC110079.1: 17%|█▋ | 3/18 [00:00<00:01, 9.56it/s]
Processing DNAJC1--C10orf143: 17%|█▋ | 3/18 [00:00<00:01, 9.56it/s]
Processing DNAJC1--C10orf143: 22%|██▏ | 4/18 [00:00<00:01, 9.60it/s]
Processing PRSS27--TPSB2: 22%|██▏ | 4/18 [00:00<00:01, 9.60it/s]
Processing PRSS27--TPSB2: 28%|██▊ | 5/18 [00:00<00:01, 9.62it/s]
Processing NEBL--CDK1: 28%|██▊ | 5/18 [00:00<00:01, 9.62it/s]
Processing NEBL--CDK1: 33%|███▎ | 6/18 [00:00<00:01, 9.63it/s]
Processing STX16--NPEPL1: 33%|███▎ | 6/18 [00:00<00:01, 9.63it/s]
Processing STX16--NPEPL1: 39%|███▉ | 7/18 [00:00<00:01, 9.64it/s]
Processing TVP23C--CDRT4: 39%|███▉ | 7/18 [00:00<00:01, 9.64it/s]
Processing TVP23C--CDRT4: 44%|████▍ | 8/18 [00:00<00:01, 9.64it/s]
Processing AC092807.3--DDAH1: 44%|████▍ | 8/18 [00:00<00:01, 9.64it/s]
Processing AC092807.3--DDAH1: 50%|█████ | 9/18 [00:00<00:00, 9.65it/s]
Processing TLK2--FAM157A: 50%|█████ | 9/18 [00:00<00:00, 9.65it/s]
Processing TLK2--FAM157A: 56%|█████▌ | 10/18 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC1: 56%|█████▌ | 10/18 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC1: 61%|██████ | 11/18 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC2: 61%|██████ | 11/18 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC2: 67%|██████▋ | 12/18 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHA13: 67%|██████▋ | 12/18 [00:01<00:00, 9.65it/s]
Processing PCDHA6--PCDHA13: 72%|███████▏ | 13/18 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC1: 72%|███████▏ | 13/18 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC1: 78%|███████▊ | 14/18 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC2: 78%|███████▊ | 14/18 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHAC2: 83%|████████▎ | 15/18 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHA13: 83%|████████▎ | 15/18 [00:01<00:00, 9.65it/s]
Processing PCDHA10--PCDHA13: 89%|████████▉ | 16/18 [00:01<00:00, 9.65it/s]
Processing CRYZL2P--SEC16B: 89%|████████▉ | 16/18 [00:01<00:00, 9.65it/s]
Processing CRYZL2P--SEC16B: 94%|█████████▍| 17/18 [00:01<00:00, 9.65it/s]
Processing KLRC4--KLRK1: 94%|█████████▍| 17/18 [00:01<00:00, 9.65it/s]
Processing KLRC4--KLRK1: 100%|██████████| 18/18 [00:01<00:00, 9.65it/s]
Processing KLRC4--KLRK1: 100%|██████████| 18/18 [00:01<00:00, 9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory