Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/07c965b2a0c1f2059049f0ac29d954/659_bhK-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/dfea8092ca59d5e6e90122e6298c87/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/dfea8092ca59d5e6e90122e6298c87/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/0c2dc0b8f97e7aadba6132e4e248d6/659_bhK-T1-TRNA-1_A23MVY2LT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
CCDC6--RET
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
DNAJC1--C10orf143
starfusion
arriba
PRSS27--TPSB2
starfusion
NEBL--CDK1
starfusion
arriba
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
AC092807.3--DDAH1
arriba
TLK2--FAM157A
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
CRYZL2P--SEC16B
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/18 [00:00<?, ?it/s]
Processing CCDC6--RET:   0%|          | 0/18 [00:00<?, ?it/s]
Processing CCDC6--RET:   6%|▌         | 1/18 [00:00<00:01,  9.25it/s]
Processing TLK2--AC240565.1:   6%|▌         | 1/18 [00:00<00:01,  9.25it/s]
Processing TLK2--AC240565.1:  11%|█         | 2/18 [00:00<00:01,  9.48it/s]
Processing TLK2P1--AC110079.1:  11%|█         | 2/18 [00:00<00:01,  9.48it/s]
Processing TLK2P1--AC110079.1:  17%|█▋        | 3/18 [00:00<00:01,  9.56it/s]
Processing DNAJC1--C10orf143:  17%|█▋        | 3/18 [00:00<00:01,  9.56it/s] 
Processing DNAJC1--C10orf143:  22%|██▏       | 4/18 [00:00<00:01,  9.60it/s]
Processing PRSS27--TPSB2:  22%|██▏       | 4/18 [00:00<00:01,  9.60it/s]    
Processing PRSS27--TPSB2:  28%|██▊       | 5/18 [00:00<00:01,  9.62it/s]
Processing NEBL--CDK1:  28%|██▊       | 5/18 [00:00<00:01,  9.62it/s]   
Processing NEBL--CDK1:  33%|███▎      | 6/18 [00:00<00:01,  9.63it/s]
Processing STX16--NPEPL1:  33%|███▎      | 6/18 [00:00<00:01,  9.63it/s]
Processing STX16--NPEPL1:  39%|███▉      | 7/18 [00:00<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  39%|███▉      | 7/18 [00:00<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  44%|████▍     | 8/18 [00:00<00:01,  9.64it/s]
Processing AC092807.3--DDAH1:  44%|████▍     | 8/18 [00:00<00:01,  9.64it/s]
Processing AC092807.3--DDAH1:  50%|█████     | 9/18 [00:00<00:00,  9.65it/s]
Processing TLK2--FAM157A:  50%|█████     | 9/18 [00:00<00:00,  9.65it/s]    
Processing TLK2--FAM157A:  56%|█████▌    | 10/18 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC1:  56%|█████▌    | 10/18 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC1:  61%|██████    | 11/18 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  61%|██████    | 11/18 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  67%|██████▋   | 12/18 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHA13:  67%|██████▋   | 12/18 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHA13:  72%|███████▏  | 13/18 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  72%|███████▏  | 13/18 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  78%|███████▊  | 14/18 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  78%|███████▊  | 14/18 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  83%|████████▎ | 15/18 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  83%|████████▎ | 15/18 [00:01<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  89%|████████▉ | 16/18 [00:01<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  89%|████████▉ | 16/18 [00:01<00:00,  9.65it/s] 
Processing CRYZL2P--SEC16B:  94%|█████████▍| 17/18 [00:01<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  94%|█████████▍| 17/18 [00:01<00:00,  9.65it/s]   
Processing KLRC4--KLRK1: 100%|██████████| 18/18 [00:01<00:00,  9.65it/s]
Processing KLRC4--KLRK1: 100%|██████████| 18/18 [00:01<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory