Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/b41fd918436902d77d7630519f40cf/659_bua-T1-TRNA-1_A23MVY2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/42d3e8517d2e11e85a80370f9bb630/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/42d3e8517d2e11e85a80370f9bb630/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/2ae321bf68a8881ce31284aecd586b/659_bua-T1-TRNA-1_A23MVY2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
TPM3--NTRK1
starfusion
arriba
RARS1--WWC1
starfusion
arriba
CRACD--THEGL
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
ADAMTS2--RARS1
starfusion
arriba
AC091132.4--AC103810.6
starfusion
AVL9--SEPTIN7
arriba
AVL9--RNU6-1085P
arriba
TVP23C--CDRT4
arriba
ERBIN--ARHGAP26
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
PCDHA4--PCDHAC2
arriba
WWC1--ADAMTS2
arriba
AC092807.3--DDAH1
arriba
NTRK1--NUP210L
arriba
0%| | 0/17 [00:00<?, ?it/s]
Processing TPM3--NTRK1: 0%| | 0/17 [00:00<?, ?it/s]
Processing TPM3--NTRK1: 6%|▌ | 1/17 [00:00<00:01, 9.06it/s]
Processing RARS1--WWC1: 6%|▌ | 1/17 [00:00<00:01, 9.06it/s]
Processing RARS1--WWC1: 12%|█▏ | 2/17 [00:00<00:01, 9.33it/s]
Processing CRACD--THEGL: 12%|█▏ | 2/17 [00:00<00:01, 9.33it/s]
Processing CRACD--THEGL: 18%|█▊ | 3/17 [00:00<00:01, 9.43it/s]
Processing TLK2P1--AC110079.1: 18%|█▊ | 3/17 [00:00<00:01, 9.43it/s]
Processing TLK2P1--AC110079.1: 24%|██▎ | 4/17 [00:00<00:01, 9.46it/s]
Processing TLK2--AC240565.1: 24%|██▎ | 4/17 [00:00<00:01, 9.46it/s]
Processing TLK2--AC240565.1: 29%|██▉ | 5/17 [00:00<00:01, 9.51it/s]
Processing ADAMTS2--RARS1: 29%|██▉ | 5/17 [00:00<00:01, 9.51it/s]
Processing ADAMTS2--RARS1: 35%|███▌ | 6/17 [00:00<00:01, 9.52it/s]
Processing AC091132.4--AC103810.6: 35%|███▌ | 6/17 [00:00<00:01, 9.52it/s]
Processing AC091132.4--AC103810.6: 41%|████ | 7/17 [00:00<00:01, 9.53it/s]
Processing AVL9--SEPTIN7: 41%|████ | 7/17 [00:00<00:01, 9.53it/s]
Processing AVL9--SEPTIN7: 47%|████▋ | 8/17 [00:00<00:00, 9.53it/s]
Processing AVL9--RNU6-1085P: 47%|████▋ | 8/17 [00:00<00:00, 9.53it/s]
Processing AVL9--RNU6-1085P: 53%|█████▎ | 9/17 [00:00<00:00, 9.55it/s]
Processing TVP23C--CDRT4: 53%|█████▎ | 9/17 [00:00<00:00, 9.55it/s]
Processing TVP23C--CDRT4: 59%|█████▉ | 10/17 [00:01<00:00, 9.57it/s]
Processing ERBIN--ARHGAP26: 59%|█████▉ | 10/17 [00:01<00:00, 9.57it/s]
Processing ERBIN--ARHGAP26: 65%|██████▍ | 11/17 [00:01<00:00, 9.56it/s]
Processing PCDHA4--PCDHAC1: 65%|██████▍ | 11/17 [00:01<00:00, 9.56it/s]
Processing PCDHA4--PCDHAC1: 71%|███████ | 12/17 [00:01<00:00, 9.57it/s]
Processing PCDHA4--PCDHA13: 71%|███████ | 12/17 [00:01<00:00, 9.57it/s]
Processing PCDHA4--PCDHA13: 76%|███████▋ | 13/17 [00:01<00:00, 9.56it/s]
Processing PCDHA4--PCDHAC2: 76%|███████▋ | 13/17 [00:01<00:00, 9.56it/s]
Processing PCDHA4--PCDHAC2: 82%|████████▏ | 14/17 [00:01<00:00, 9.54it/s]
Processing WWC1--ADAMTS2: 82%|████████▏ | 14/17 [00:01<00:00, 9.54it/s]
Processing WWC1--ADAMTS2: 88%|████████▊ | 15/17 [00:01<00:00, 9.54it/s]
Processing AC092807.3--DDAH1: 88%|████████▊ | 15/17 [00:01<00:00, 9.54it/s]
Processing AC092807.3--DDAH1: 94%|█████████▍| 16/17 [00:01<00:00, 9.56it/s]
Processing NTRK1--NUP210L: 94%|█████████▍| 16/17 [00:01<00:00, 9.56it/s]
Processing NTRK1--NUP210L: 100%|██████████| 17/17 [00:01<00:00, 9.55it/s]
Processing NTRK1--NUP210L: 100%|██████████| 17/17 [00:01<00:00, 9.52it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory