[W::hts_idx_load3] The index file is older than the data file: 659_bhK-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	395273738
Known Splicing Events:	392087137
Partial Novel Splicing Events:	1607968
Novel Splicing Events:	1474274
Filtered Splicing Events:	104359

Total splicing  Junctions:	569154
Known Splicing Junctions:	279361
Partial Novel Splicing Junctions:	163723
Novel Splicing Junctions:	126070

===================================================================
Create BED file ...
Create Interact file ...