Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/ca658ca15e3c6b02d98254ca5b9c2d/659_bhK-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/5e9d76f7c2498e0249846bb754e381/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/5e9d76f7c2498e0249846bb754e381/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/be7eac851db0d78232c919dba44900/659_bhK-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 395273738
[W::hts_idx_load3] The index file is older than the data file: 659_bhK-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	395273738
Known Splicing Events:	392087137
Partial Novel Splicing Events:	1607968
Novel Splicing Events:	1474274
Filtered Splicing Events:	104359

Total splicing  Junctions:	569154
Known Splicing Junctions:	279361
Partial Novel Splicing Junctions:	163723
Novel Splicing Junctions:	126070

===================================================================
Create BED file ...
Create Interact file ...